mRNA_P-wetherbeei_contig56804.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56804.1.1
Unique NamemRNA_P-wetherbeei_contig56804.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56804.1.1 vs. uniprot
Match: A0A0Q4G9U3_9BURK (Uncharacterized protein n=1 Tax=Xylophilus sp. Leaf220 TaxID=1735686 RepID=A0A0Q4G9U3_9BURK)

HSP 1 Score: 55.8 bits (133), Expect = 1.840e-6
Identity = 38/130 (29.23%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:    1 VENGKQTSQRHFLLEARTGDVVLPI--LEPLQGLRVMLITPEASVLVPSRLEGFGATAAGPQGMTQFVEQVDRWINGLSMALAEVVGVAPDNAQAATAGSSIEAQPGTAVTARSGIVWVESSDAELAYCD 384
            VE+G  T  R F+     GD++L +   E +  + ++ +    + +  + +    A AA P      V  +DRWI GLS A+A  +   P  A   + G +++A PG  + AR G+VW+++  A   Y D
Sbjct:   54 VEDGVPTGVREFMFTLGAGDLLLGVDGSEAMLPVGLLAVGQVGTRIAEAGMADLQAAAAHPDLQPWVVRGIDRWIEGLSDAMARPIVPRPPVAVLLSPGETLDAGPGQRIGAR-GVVWIDTQGATPLYLD 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56804.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0Q4G9U3_9BURK1.840e-629.23Uncharacterized protein n=1 Tax=Xylophilus sp. Lea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56804contigP-wetherbeei_contig56804:17..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog936455.KI421499_gene2030
PFAMsABC_membrane,ABC_tran
Model size387
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-06
EggNOG OGsCOG2274@1|root,COG2274@2|Bacteria,1MY50@1224|Proteobacteria,2TSFZ@28211|Alphaproteobacteria,3JTKB@41294|Bradyrhizobiaceae
DescriptionABC transporter transmembrane region
Cds size387
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.5543866-CDS-P-wetherbeei_contig56804:16..4031683186843.5543866-CDS-P-wetherbeei_contig56804:16..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56804 17..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56804.1.1prot_P-wetherbeei_contig56804.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56804 17..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56804.1.1

>prot_P-wetherbeei_contig56804.1.1 ID=prot_P-wetherbeei_contig56804.1.1|Name=mRNA_P-wetherbeei_contig56804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
VENGKQTSQRHFLLEARTGDVVLPILEPLQGLRVMLITPEASVLVPSRLE
GFGATAAGPQGMTQFVEQVDRWINGLSMALAEVVGVAPDNAQAATAGSSI
EAQPGTAVTARSGIVWVESSDAELAYCDG
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mRNA from alignment at P-wetherbeei_contig56804:17..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56804.1.1 ID=mRNA_P-wetherbeei_contig56804.1.1|Name=mRNA_P-wetherbeei_contig56804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56804:17..403+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAACGGCAAGCAGACCTCGCAGCGTCATTTCCTGCTCGAGGCGCG
GACCGGAGACGTCGTGCTGCCGATCCTCGAACCGCTGCAGGGCCTGCGCG
TGATGCTGATCACGCCGGAAGCCAGCGTGCTGGTCCCGTCGAGGCTCGAA
GGCTTTGGCGCGACCGCCGCCGGCCCGCAAGGGATGACGCAATTCGTCGA
ACAGGTCGATCGCTGGATCAACGGCTTGTCCATGGCGCTCGCCGAGGTGG
TCGGCGTCGCCCCGGACAACGCGCAGGCGGCGACGGCCGGCAGCAGCATC
GAGGCGCAGCCCGGCACGGCGGTGACGGCGCGCTCCGGCATCGTGTGGGT
CGAGAGCAGCGACGCCGAGCTCGCCTATTGCGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56804:17..403+

>mRNA_P-wetherbeei_contig56804.1.1 ID=mRNA_P-wetherbeei_contig56804.1.1|Name=mRNA_P-wetherbeei_contig56804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56804:17..403+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAACGGCAAGCAGACCTCGCAGCGTCATTTCCTGCTCGAGGCGCG
GACCGGAGACGTCGTGCTGCCGATCCTCGAACCGCTGCAGGGCCTGCGCG
TGATGCTGATCACGCCGGAAGCCAGCGTGCTGGTCCCGTCGAGGCTCGAA
GGCTTTGGCGCGACCGCCGCCGGCCCGCAAGGGATGACGCAATTCGTCGA
ACAGGTCGATCGCTGGATCAACGGCTTGTCCATGGCGCTCGCCGAGGTGG
TCGGCGTCGCCCCGGACAACGCGCAGGCGGCGACGGCCGGCAGCAGCATC
GAGGCGCAGCCCGGCACGGCGGTGACGGCGCGCTCCGGCATCGTGTGGGT
CGAGAGCAGCGACGCCGAGCTCGCCTATTGCGACGGC
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