mRNA_P-wetherbeei_contig56776.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56776.1.1
Unique NamemRNA_P-wetherbeei_contig56776.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56776.1.1 vs. uniprot
Match: A0A538BV36_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BV36_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 2.700e-5
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 1 
Query:   34 PYPVYWVGDSFDGFRLAGVS-EPRGRVSFDYRRCVAG---RCHASLRIRTVPACRVQSADVVAPTGLGRIRGVPA--GRRGGALVLFTGRAQVRILGAPS-LARRVAAALLAAPTPAL-GGDIHSPLP 393
            PYPVYW+G SF+G R+   + +P G  +  Y  C+ G    C A LR+ T P          A +  GR+RGV A   R G  + L TG   V I  A + LA      L+   +PA+ GG +   LP
Sbjct:   44 PYPVYWLGGSFEGLRITEATHDPSGAFTVQYGDCITGGQYTCVAPLRVVTSPDNSFIPGGSTAGSS-GRLRGVRAFFARGGRVIELATGPVVVGIYAARARLAGAAGEGLVPINSPAVPGGRLPPGLP 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56776.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A538BV36_9ACTN2.700e-535.94Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56776contigP-wetherbeei_contig56776:100..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.0417116-CDS-P-wetherbeei_contig56776:99..5011683186843.0417116-CDS-P-wetherbeei_contig56776:99..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56776 100..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56776.1.1prot_P-wetherbeei_contig56776.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56776 100..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56776.1.1

>prot_P-wetherbeei_contig56776.1.1 ID=prot_P-wetherbeei_contig56776.1.1|Name=mRNA_P-wetherbeei_contig56776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
IPDLSIAVPRRPYPVYWVGDSFDGFRLAGVSEPRGRVSFDYRRCVAGRCH
ASLRIRTVPACRVQSADVVAPTGLGRIRGVPAGRRGGALVLFTGRAQVRI
LGAPSLARRVAAALLAAPTPALGGDIHSPLPRPV
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mRNA from alignment at P-wetherbeei_contig56776:100..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56776.1.1 ID=mRNA_P-wetherbeei_contig56776.1.1|Name=mRNA_P-wetherbeei_contig56776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig56776:100..501- (Phaeothamnion wetherbeei SAG_119_79)
ATCCCGGACCTCAGCATCGCCGTGCCGCGGCGGCCCTACCCCGTGTACTG
GGTGGGCGACAGCTTCGACGGCTTCCGGCTGGCCGGCGTCTCCGAGCCGC
GGGGGCGGGTCTCGTTCGACTACCGCCGCTGCGTGGCCGGGCGCTGCCAC
GCGTCTCTGCGCATCCGGACCGTGCCCGCGTGCCGTGTGCAGAGCGCAGA
CGTCGTCGCCCCCACCGGCCTCGGGCGCATTCGCGGGGTGCCCGCGGGTC
GGCGCGGCGGTGCGCTGGTGCTGTTCACGGGCCGCGCGCAGGTGCGCATC
CTGGGCGCCCCCTCCCTGGCACGGCGCGTGGCCGCGGCGCTTCTGGCGGC
GCCCACCCCCGCGCTGGGCGGCGACATCCACTCCCCCCTGCCGCGCCCGG
TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56776:100..501-

>mRNA_P-wetherbeei_contig56776.1.1 ID=mRNA_P-wetherbeei_contig56776.1.1|Name=mRNA_P-wetherbeei_contig56776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig56776:100..501- (Phaeothamnion wetherbeei SAG_119_79)
ATCCCGGACCTCAGCATCGCCGTGCCGCGGCGGCCCTACCCCGTGTACTG
GGTGGGCGACAGCTTCGACGGCTTCCGGCTGGCCGGCGTCTCCGAGCCGC
GGGGGCGGGTCTCGTTCGACTACCGCCGCTGCGTGGCCGGGCGCTGCCAC
GCGTCTCTGCGCATCCGGACCGTGCCCGCGTGCCGTGTGCAGAGCGCAGA
CGTCGTCGCCCCCACCGGCCTCGGGCGCATTCGCGGGGTGCCCGCGGGTC
GGCGCGGCGGTGCGCTGGTGCTGTTCACGGGCCGCGCGCAGGTGCGCATC
CTGGGCGCCCCCTCCCTGGCACGGCGCGTGGCCGCGGCGCTTCTGGCGGC
GCCCACCCCCGCGCTGGGCGGCGACATCCACTCCCCCCTGCCGCGCCCGG
TG
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