mRNA_P-wetherbeei_contig56708.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56708.2.1
Unique NamemRNA_P-wetherbeei_contig56708.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56708.2.1 vs. uniprot
Match: A0A7Z9U9L3_9BACT (SLH domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9U9L3_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 4.610e-17
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 LEQTQTSLYDVRSTVGSAGPGAPNYPVIGFSPGFIENIFWGYATPYQYGPKTANSFTNDL 180
             +QT+TSLYDVR T G+ G   PN+PVIGFSPGF++ +F GYA P  YGP +AN+FT +L
Sbjct:  610 FDQTRTSLYDVRVTPGALGLAVPNFPVIGFSPGFVDYVFAGYAHPNLYGPNSANAFTTNL 669
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BLAST of mRNA_P-wetherbeei_contig56708.2.1 vs. uniprot
Match: A0A7X9AEY1_9BURK (Porin n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEY1_9BURK)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 LEQTQTSLYDVRSTVGSAGPGAPNYPVIGFSPGFIENIFWGYATPYQYGPKTANSFTNDL 180
            L Q +TSLYDVR   G+ G GAPN P++GF+PG+I+ +F+GYA P  YG  T++SF + L
Sbjct:  654 LNQKETSLYDVRVLPGAVGAGAPNVPIVGFAPGWIDPVFFGYAHPGIYGAGTSSSFNDAL 713
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BLAST of mRNA_P-wetherbeei_contig56708.2.1 vs. uniprot
Match: A0A1E4EZV8_9BACT (SLH domain-containing protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4EZV8_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 7.310e-13
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    7 QTQTSLYDVRSTVGSAGPGAPNYPVIGFSPGFIENIFWGYATPYQYGPKTANSFTNDL 180
            QT+TS+YDVR   GS  P  PN+ V+G++PGF + +F G A+P  YGP +ANSF+  L
Sbjct:  597 QTRTSMYDVRYAAGSLAPDTPNFGVLGYAPGFTDQVFSGLASPLLYGPGSANSFSPSL 654
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BLAST of mRNA_P-wetherbeei_contig56708.2.1 vs. uniprot
Match: A0A355TS70_9BACT (Uncharacterized protein (Fragment) n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TS70_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.010e-10
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 LEQTQTSLYDVRSTVGSAGPGAPNYPVIGFSPGFIENIFWGYATPYQYGPKTANSFTNDL 180
            L Q ++SLYDVR   G+   GAP   V+GF+PGF++ +F+GYA P  YG ++A+SF ++L
Sbjct:  354 LNQKESSLYDVREQAGTVA-GAPTNYVLGFAPGFMDPVFYGYADPSVYGAQSASSFDDNL 412
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56708.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Z9U9L3_9BACT4.610e-1760.00SLH domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7X9AEY1_9BURK1.120e-1353.33Porin n=1 Tax=Burkholderiales bacterium TaxID=1891... [more]
A0A1E4EZV8_9BACT7.310e-1351.72SLH domain-containing protein n=1 Tax=bacterium SC... [more]
A0A355TS70_9BACT2.010e-1048.33Uncharacterized protein (Fragment) n=1 Tax=bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56708contigP-wetherbeei_contig56708:326..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons1
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.4923599-CDS-P-wetherbeei_contig56708:325..5051683186842.4923599-CDS-P-wetherbeei_contig56708:325..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56708 326..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56708.2.1prot_P-wetherbeei_contig56708.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56708 326..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56708.2.1

>prot_P-wetherbeei_contig56708.2.1 ID=prot_P-wetherbeei_contig56708.2.1|Name=mRNA_P-wetherbeei_contig56708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
LEQTQTSLYDVRSTVGSAGPGAPNYPVIGFSPGFIENIFWGYATPYQYGP
KTANSFTNDL
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mRNA from alignment at P-wetherbeei_contig56708:326..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56708.2.1 ID=mRNA_P-wetherbeei_contig56708.2.1|Name=mRNA_P-wetherbeei_contig56708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig56708:326..505- (Phaeothamnion wetherbeei SAG_119_79)
CTGGAACAGACGCAGACCTCGCTCTACGACGTGCGTTCCACGGTCGGGAG
CGCGGGACCCGGCGCACCCAACTACCCGGTTATCGGATTCTCGCCAGGCT
TCATTGAGAACATTTTCTGGGGTTACGCTACGCCATATCAGTACGGGCCC
AAGACCGCCAACTCTTTTACCAACGATTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56708:326..505-

>mRNA_P-wetherbeei_contig56708.2.1 ID=mRNA_P-wetherbeei_contig56708.2.1|Name=mRNA_P-wetherbeei_contig56708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig56708:326..505- (Phaeothamnion wetherbeei SAG_119_79)
CTGGAACAGACGCAGACCTCGCTCTACGACGTGCGTTCCACGGTCGGGAG
CGCGGGACCCGGCGCACCCAACTACCCGGTTATCGGATTCTCGCCAGGCT
TCATTGAGAACATTTTCTGGGGTTACGCTACGCCATATCAGTACGGGCCC
AAGACCGCCAACTCTTTTACCAACGATTTG
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