mRNA_P-wetherbeei_contig567.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig567.1.1
Unique NamemRNA_P-wetherbeei_contig567.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig567contigP-wetherbeei_contig567:459..1312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons2
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.1558776-UTR-P-wetherbeei_contig567:458..7161683186842.1558776-UTR-P-wetherbeei_contig567:458..716Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig567 459..716 -
1683186842.1834865-UTR-P-wetherbeei_contig567:1245..13121683186842.1834865-UTR-P-wetherbeei_contig567:1245..1312Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig567 1246..1312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.164254-CDS-P-wetherbeei_contig567:716..8361683186842.164254-CDS-P-wetherbeei_contig567:716..836Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig567 717..836 -
1683186842.1755397-CDS-P-wetherbeei_contig567:909..12451683186842.1755397-CDS-P-wetherbeei_contig567:909..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig567 910..1245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig567.1.1prot_P-wetherbeei_contig567.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig567 717..1245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig567.1.1

>prot_P-wetherbeei_contig567.1.1 ID=prot_P-wetherbeei_contig567.1.1|Name=mRNA_P-wetherbeei_contig567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MAAAAAGGAIGGGGGGLGAASAAARPSTVLSMTVDAPPVPLRPLGPTRQL
SSAVVAGPPPLLSRGAAERRVSMPSAPPPLLSRSGSIGGAVGMAVRALPP
APATMGSGMTSPYRRRHRQLWLQGPGIRRCHHHHRRRRRRRRGKTRWSGS
L*
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mRNA from alignment at P-wetherbeei_contig567:459..1312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig567.1.1 ID=mRNA_P-wetherbeei_contig567.1.1|Name=mRNA_P-wetherbeei_contig567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=854bp|location=Sequence derived from alignment at P-wetherbeei_contig567:459..1312- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGCCGCTGCCGCCGTCGCAGGCGGACAAGCCGCTGCCAACGCCGG
CCGCGCCACCCCACGCCATGGCTGCCGCCGCGGCCGGCGGCGCCATTGGT
GGCGGCGGTGGCGGTCTCGGAGCGGCTTCTGCCGCCGCGCGTCCGAGCAC
GGTGCTTTCGATGACGGTGGATGCCCCGCCGGTGCCGCTGCGGCCGCTGG
GGCCGACACGGCAGCTGTCGTCCGCCGTGGTGGCCGGCCCGCCGCCGCTG
CTCTCACGGGGCGCAGCGGAGCGCCGGGTATCGATGCCGTCGGCGCCACC
GCCGCTGCTCTCGCGCTCGGGCAGCATCGGAGGGGCGGTCGGGATGGCTG
TCCGCGCCCTCCCTCCGGCGCCCGCCACGATGGGCAGCGGCATGACGTCG
CCGCTGCCGCCGCCGCCGCCGCCGTCGCTGGCGACAGGCGGGGTGGGCGA
GCGGCCGAGCGGGATGCCGCCGCCGCTACCGCCGCCGCCACCGCCAATTA
TGGCTGCAAGGTCCAGGGATACGCCGCTGCCACCACCACCACCGCCGCCG
CCGCCGCCGCCGCAGAGGTAAAACGAGGTGGTCAGGTAGTTTGTAGATGC
TTCAGCGGGGTAGTTTTCCTTTTGAGAACAGGAAGGTGCCTGAGTGCTGC
AGATTGGTCTCTCAGGGAGGCGTAGGTTAAAGGGAACAAATCTGACATGA
CTCAATCGACTGTTTTGTCAGGAAGGAGGAGATTGACGATTTGTATCTCA
TGCCTCGCTGCGCTGGGAGCGGCGATCCGGTGCACTTGTTTGTCTGAACC
TCTTACGAATGCTTCAGGGCCGACTCTTTTCTTGGAAAACGCGTGTTGTC
CTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig567:459..1312-

>mRNA_P-wetherbeei_contig567.1.1 ID=mRNA_P-wetherbeei_contig567.1.1|Name=mRNA_P-wetherbeei_contig567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig567:459..1312- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCCGCCGCGGCCGGCGGCGCCATTGGTGGCGGCGGTGGCGGTCT
CGGAGCGGCTTCTGCCGCCGCGCGTCCGAGCACGGTGCTTTCGATGACGG
TGGATGCCCCGCCGGTGCCGCTGCGGCCGCTGGGGCCGACACGGCAGCTG
TCGTCCGCCGTGGTGGCCGGCCCGCCGCCGCTGCTCTCACGGGGCGCAGC
GGAGCGCCGGGTATCGATGCCGTCGGCGCCACCGCCGCTGCTCTCGCGCT
CGGGCAGCATCGGAGGGGCGGTCGGGATGGCTGTCCGCGCCCTCCCTCCG
GCGCCCGCCACGATGGGCAGCGGCATGACGTCGCCGTACCGCCGCCGCCA
CCGCCAATTATGGCTGCAAGGTCCAGGGATACGCCGCTGCCACCACCACC
ACCGCCGCCGCCGCCGCCGCCGCAGAGGTAAAACGAGGTGGTCAGGTAGT
TTGTAG
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