mRNA_P-wetherbeei_contig56693.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56693.1.1
Unique NamemRNA_P-wetherbeei_contig56693.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A6L5FDR5_9HYPH (Amidohydrolase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FDR5_9HYPH)

HSP 1 Score: 256 bits (654), Expect = 3.440e-80
Identity = 117/171 (68.42%), Postives = 145/171 (84.80%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QFAE RRPTQAEIAA APDH+VYVQILY+ VLLS G  EA+G++ + ELA+ L IE   + +PTGW+ GD RT+S+L++LLP P F QKV GTRAFFRVLNS+G+TGV+DPGGYN+ I +Y+PLF++WR+RA+T+RV YSLCAPR GHELEDLQA+T  +PMGFGD+WLRF
Sbjct:  125 QFAEGRRPTQAEIAAVAPDHHVYVQILYSRVLLSSGAFEALGIVRHEELAASLTIERDSENRPTGWVTGDARTISNLFNLLPPPTFAQKVKGTRAFFRVLNSVGLTGVIDPGGYNLSIPDYQPLFRVWRDRALTLRVRYSLCAPRRGHELEDLQALTQVLPMGFGDEWLRF 295          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A127EUU7_9HYPH (TIM-barrel fold metal-dependent hydrolase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EUU7_9HYPH)

HSP 1 Score: 251 bits (642), Expect = 3.130e-78
Identity = 117/171 (68.42%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E RRPT+ EIAAAAPDH+VYVQ LY+ VLL P G  A+G+   ++LASR+ IE   DG PTGWL GDNR +S+L+DLLPRP F QKVAGT+AFFR LN++G+TGV+DPGGYN+PI++Y+PLFQIWRERA+T+RV YSL APR  HELED Q +T  +PMGFGDDWLRF
Sbjct:  143 QFKEDRRPTETEIAAAAPDHHVYVQELYSRVLLDPKGFAALGI--PSDLASRITIERDKDGAPTGWLTGDNRAISELFDLLPRPDFAQKVAGTKAFFRALNAMGLTGVIDPGGYNLPIADYQPLFQIWRERALTLRVRYSLSAPRRDHELEDFQDLTQVLPMGFGDDWLRF 311          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A1Q7GRP0_9BACT (Amidohydrolase n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7GRP0_9BACT)

HSP 1 Score: 197 bits (501), Expect = 1.870e-57
Identity = 92/171 (53.80%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E RRPTQA++ AAAPD  VY+Q++Y A LL+P G +A+ + ++A++  R +IE    G PTGW++GD  T++ L+  LP P FEQKV GTR FFR LN L +TGV+DPGG N+  ++Y PLF++W++RA+T+RVVYS+ A R G ELED + +   +PMGFGDD LRF
Sbjct:  134 QFKEARRPTQADLIAAAPDRLVYIQMMYGAALLTPAGFKALDISSDADVPPRGKIERDAGGNPTGWISGDMPTITALFSRLPTPTFEQKVDGTRRFFRELNRLALTGVIDPGGANLTPADYLPLFKVWQDRALTLRVVYSMFAQRRGAELEDFKNLVQLLPMGFGDDSLRF 304          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A317HQC2_9BACT (Amidohydrolase (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A317HQC2_9BACT)

HSP 1 Score: 192 bits (487), Expect = 2.210e-57
Identity = 89/171 (52.05%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E RRPTQAE+  AAPD+ VYVQ+ Y   +++P G +A+G+  +A+L +   +E   +G+PTG ++G    +  L+D LPRP F+Q+V GT+AFFR LN L +TGV+DPGG N+   +Y+ LF +WRER MT+RVVY+LC    G E ++LQA TA +PMGFGDD LRF
Sbjct:  142 QFKENRRPTQAELVQAAPDNPVYVQLGYGWAVMTPAGFKALGITGDADLPAGGRLERDANGRPTGAISGSQGAIVALFDRLPRPTFDQQVDGTKAFFRELNRLALTGVVDPGGNNLAPDDYQALFTVWRERQMTIRVVYALCGQTPGSEFDELQAWTALLPMGFGDDMLRF 312          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A537L6R8_9PROT (Amidohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L6R8_9PROT)

HSP 1 Score: 186 bits (471), Expect = 5.820e-53
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QFAERRRPTQAE+ AAAP+H VY+Q+ Y A LL+P G+ A+G+ ++A+L +  + E G +G+  GW+ GD+  ++ LY  LP P  ++ + GTR F R LN  G+TGV DPGG+N+   +YE L  +WR   +TVR+ YS+C+PR G EL DLQ +T  +PMG GD  LRF
Sbjct:  145 QFAERRRPTQAELVAAAPEHPVYIQLFYRAALLTPAGLRALGIASDADLPATSKREQG-EGE--GWIGGDSAAITGLYARLPSPALDEGMEGTRRFLRELNRFGITGVFDPGGHNLAPEDYEALLALWRADRLTVRIAYSICSPRPGSELADLQMLTRFLPMGVGDGMLRF 312          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A536SPL0_9PROT (Amidohydrolase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SPL0_9PROT)

HSP 1 Score: 183 bits (464), Expect = 2.170e-52
Identity = 85/171 (49.71%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E+RRPT+AE+AAAA DH  YVQ+ Y   L++P   +A+ +  +++L  R  +E    G PTG + GD  T++ L+  LP P FEQ+V GTR FFR LN L +TGV+DPGG+ M   +Y+ L ++WR+RA+T+RV Y++ A + G ELED +A+T  +PMGFGDD LRF
Sbjct:   83 QFREKRRPTRAELAAAAGDHPAYVQLFYGWALMTPAAFKALNIAADSDLPPRGALERDAAGNPTGGITGDTATITALFARLPSPPFEQRVEGTRKFFRELNRLALTGVIDPGGFGMAPRDYQALLKLWRDRALTLRVAYTVFAQKRGSELEDYRALTQLLPMGFGDDMLRF 253          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A3N5G5Y6_9BACT (Amidohydrolase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5G5Y6_9BACT)

HSP 1 Score: 183 bits (464), Expect = 4.830e-52
Identity = 84/171 (49.12%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E RRPTQAE+ AAAP++ VYVQ+ Y   +L+P  ++A+ +  +A+L +  ++E   +G+PTG ++G    +  L+D LPRP F+++V GT+ FFR LN LG+TGV+DPGG N+   +Y+ +F +WR+R MTVRV YSLC    G E  +L+ +TA +PMGFGDD LRF
Sbjct:  141 QFKENRRPTQAELVAAAPNNPVYVQLGYGWAMLTPTALKALNISTDADLPASGKLERDANGQPTGGISGSQGAIIALFDRLPRPTFDEQVDGTKKFFRELNRLGLTGVVDPGGNNLGPDDYQAVFNVWRQRQMTVRVAYSLCGQTPGSEFAELKGLTAVLPMGFGDDMLRF 311          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A0H2M745_VARPD (N-substituted formamide deformylase n=9 Tax=Variovorax TaxID=34072 RepID=A0A0H2M745_VARPD)

HSP 1 Score: 181 bits (459), Expect = 3.130e-51
Identity = 90/173 (52.02%), Postives = 124/173 (71.68%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGP--DGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QFAERRRPT AE+  AAP+H VYVQ+ Y AV+++P  +EA+GV      A  L   M P  DG P GW+ GD   +S L+D LP+P ++  +AGTRAFFR LN LGVTG++DPGG+++  S+Y  LF++WRE+A+T+RV YS+ A + G EL++ + +T  +PMGFGDD L+F
Sbjct:  141 QFAERRRPTAAELQEAAPNHPVYVQLFYEAVVMTPKALEALGVP-----AGTLPAGMKPAADGAP-GWMTGDIVGISALFDKLPKPTYDDNLAGTRAFFRELNRLGVTGLVDPGGFSIAPSQYAALFELWREKALTLRVAYSVFAQKPGAELQEFRDLTQMLPMGFGDDMLKF 307          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A537BA11_9PROT (Amidohydrolase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BA11_9PROT)

HSP 1 Score: 181 bits (458), Expect = 5.650e-51
Identity = 82/171 (47.95%), Postives = 123/171 (71.93%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QF E+RRPTQ E+AAAA +H  YVQ+ Y+ VL++P   +A+ +  +A++  R +++   +G  TG ++GD  T++ L+  LP P FEQ+VAGTRAFFR LN L +TGV+DPGG+ M   +Y+ LF++W++RA+T+RV Y++ A + G ELED + +T  +PMG GD+ LRF
Sbjct:  154 QFQEKRRPTQTELAAAAGEHPAYVQLFYSWVLMTPAAFKALNIAADADVPPRGKLDEDANGGKTGGISGDTATITALFSRLPSPSFEQRVAGTRAFFRELNRLALTGVVDPGGFGMAPRDYQALFKLWQDRALTLRVAYTVFAQKRGSELEDYRNLTQLLPMGMGDEMLRF 324          
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Match: A0A1H7IE98_9BURK (Amidohydro_3 domain-containing protein n=12 Tax=Variovorax TaxID=34072 RepID=A0A1H7IE98_9BURK)

HSP 1 Score: 178 bits (452), Expect = 3.330e-50
Identity = 86/171 (50.29%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    1 QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELASRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVLNSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHELEDLQAMTAAMPMGFGDDWLRF 513
            QFAERRRPT AE+  AAP++ VYVQ+ Y AV+++P  +EA+GV      A    ++  PDG P GW++GD   +S L+D LP+P ++  VAGTRAFF  LN LG+TG++DPGG+++  S+Y  LF++WRE+A+T+RV YS+ A + G EL++ + +T  +PMGFGDD L+F
Sbjct:  142 QFAERRRPTLAELQEAAPNNPVYVQLFYEAVVMTPKALEALGVAPGTLPAG---MKPTPDGAP-GWMSGDIVGISALFDKLPKPTYDDNVAGTRAFFTELNRLGITGLVDPGGFSIAPSQYAALFELWREKALTLRVAYSVFAQKPGAELQEFRDLTQMLPMGFGDDMLKF 308          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FDR5_9HYPH3.440e-8068.42Amidohydrolase family protein n=1 Tax=Hyphomicrobi... [more]
A0A127EUU7_9HYPH3.130e-7868.42TIM-barrel fold metal-dependent hydrolase n=1 Tax=... [more]
A0A1Q7GRP0_9BACT1.870e-5753.80Amidohydrolase n=2 Tax=unclassified Acidobacteria ... [more]
A0A317HQC2_9BACT2.210e-5752.05Amidohydrolase (Fragment) n=1 Tax=Blastocatellia b... [more]
A0A537L6R8_9PROT5.820e-5350.29Amidohydrolase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A536SPL0_9PROT2.170e-5249.71Amidohydrolase (Fragment) n=1 Tax=Betaproteobacter... [more]
A0A3N5G5Y6_9BACT4.830e-5249.12Amidohydrolase (Fragment) n=1 Tax=Acidobacteria ba... [more]
A0A0H2M745_VARPD3.130e-5152.02N-substituted formamide deformylase n=9 Tax=Variov... [more]
A0A537BA11_9PROT5.650e-5147.95Amidohydrolase n=3 Tax=Betaproteobacteria bacteriu... [more]
A0A1H7IE98_9BURK3.330e-5050.29Amidohydro_3 domain-containing protein n=12 Tax=Va... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56693contigP-wetherbeei_contig56693:2..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog543728.Vapar_0124
PFAMsAmidohydro_3
Model size513
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-51
EggNOG OGsCOG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2VIK2@28216|Betaproteobacteria,4ACVQ@80864|Comamonadaceae
DescriptionPFAM Amidohydrolase 3
Cds size513
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.0686705-CDS-P-wetherbeei_contig56693:1..5141683186842.0686705-CDS-P-wetherbeei_contig56693:1..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56693 2..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56693.1.1prot_P-wetherbeei_contig56693.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56693 2..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56693.1.1

>prot_P-wetherbeei_contig56693.1.1 ID=prot_P-wetherbeei_contig56693.1.1|Name=mRNA_P-wetherbeei_contig56693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
QFAERRRPTQAEIAAAAPDHNVYVQILYTAVLLSPGGIEAIGVLNNAELA
SRLEIEMGPDGKPTGWLAGDNRTVSDLYDLLPRPGFEQKVAGTRAFFRVL
NSLGVTGVLDPGGYNMPISEYEPLFQIWRERAMTVRVVYSLCAPRAGHEL
EDLQAMTAAMPMGFGDDWLRF
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mRNA from alignment at P-wetherbeei_contig56693:2..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56693.1.1 ID=mRNA_P-wetherbeei_contig56693.1.1|Name=mRNA_P-wetherbeei_contig56693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56693:2..514- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCGCGGAACGTCGCCGCCCGACCCAGGCTGAGATCGCCGCCGCAGC TCCCGACCATAACGTCTATGTGCAGATCCTCTACACGGCGGTCCTGCTGT CGCCCGGCGGCATCGAGGCCATCGGCGTGCTCAACAACGCCGAGCTGGCA TCGCGCCTCGAAATCGAGATGGGCCCGGACGGCAAGCCGACCGGCTGGCT CGCCGGCGACAACCGCACGGTCAGCGATCTCTACGACCTGCTGCCGCGGC CGGGTTTCGAGCAGAAGGTCGCCGGTACCCGCGCCTTCTTCCGCGTACTG AACAGCCTCGGTGTTACCGGCGTGCTCGATCCGGGCGGCTACAACATGCC GATCTCCGAATACGAGCCGCTATTCCAGATCTGGCGCGAGCGCGCGATGA CTGTGCGCGTGGTCTACAGCCTGTGCGCGCCGCGCGCCGGTCACGAGCTC GAAGACCTCCAGGCGATGACCGCCGCCATGCCGATGGGGTTCGGCGACGA CTGGCTGCGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56693:2..514-

>mRNA_P-wetherbeei_contig56693.1.1 ID=mRNA_P-wetherbeei_contig56693.1.1|Name=mRNA_P-wetherbeei_contig56693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56693:2..514- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCGCGGAACGTCGCCGCCCGACCCAGGCTGAGATCGCCGCCGCAGC
TCCCGACCATAACGTCTATGTGCAGATCCTCTACACGGCGGTCCTGCTGT
CGCCCGGCGGCATCGAGGCCATCGGCGTGCTCAACAACGCCGAGCTGGCA
TCGCGCCTCGAAATCGAGATGGGCCCGGACGGCAAGCCGACCGGCTGGCT
CGCCGGCGACAACCGCACGGTCAGCGATCTCTACGACCTGCTGCCGCGGC
CGGGTTTCGAGCAGAAGGTCGCCGGTACCCGCGCCTTCTTCCGCGTACTG
AACAGCCTCGGTGTTACCGGCGTGCTCGATCCGGGCGGCTACAACATGCC
GATCTCCGAATACGAGCCGCTATTCCAGATCTGGCGCGAGCGCGCGATGA
CTGTGCGCGTGGTCTACAGCCTGTGCGCGCCGCGCGCCGGTCACGAGCTC
GAAGACCTCCAGGCGATGACCGCCGCCATGCCGATGGGGTTCGGCGACGA
CTGGCTGCGCTTC
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