mRNA_P-wetherbeei_contig56575.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56575.1.1
Unique NamemRNA_P-wetherbeei_contig56575.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C3LHK7_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3LHK7_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 1.240e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 GSAATAVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGH 129
            GS  +AVAFSP+G C+ SG++D  V LWD++ G+ L +PL GH
Sbjct:   19 GSDVSAVAFSPDGSCVVSGSDDATVRLWDVQTGAALGDPLTGH 61
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A8H5FH82_9AGAR (NACHT domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5FH82_9AGAR)

HSP 1 Score: 53.5 bits (127), Expect = 2.090e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   19 VAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRV 141
            +A+SPNG+C+AS +EDGAV +WD + G+   EPL+ H G V
Sbjct:  944 IAYSPNGRCIASASEDGAVRIWDAQTGTPACEPLRDHTGTV 984
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C3QQV2_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QQV2_9AGAM)

HSP 1 Score: 51.2 bits (121), Expect = 3.320e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   19 VAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRV 141
            VAFSP+GK LASG+ D  + LWD + G+ + EPL+GH GRV
Sbjct:    1 VAFSPDGKLLASGSLDQTIRLWDAKTGAPIGEPLRGHDGRV 41
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C3QND1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QND1_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 3.860e-6
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   13 TAVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGH 129
            T+VAFSP+GK LA G+EDG V L DI+ G+LL EPL GH
Sbjct:  583 TSVAFSPDGKVLAVGSEDGTVRLLDIQTGTLLGEPLAGH 621
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A8H8JWU0_9AGAM (NACHT domain-containing protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JWU0_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 3.900e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   19 VAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRVSS 147
            VA+SP G C+ASG+ DG V +WD+  GSL  +PL+GH   V++
Sbjct: 1271 VAYSPGGSCVASGSADGTVRIWDVNTGSLAVQPLRGHSSSVAA 1313
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C3Q5P0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3Q5P0_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 9.270e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 AVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRVSS 147
            AVAFSP+G+ LASG++DG + +WD + G+ + EPL GH   V S
Sbjct:    1 AVAFSPDGQVLASGSQDGTIRVWDTQTGAAIGEPLTGHTHEVMS 44
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A7C7UZ02_9RHOB (WD40 repeat domain-containing protein n=1 Tax=Roseibacterium sp. TaxID=2003362 RepID=A0A7C7UZ02_9RHOB)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   13 TAVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGH 129
            TAVAFSP+G+ + SG+EDG + LWD + G+ + EPL+GH
Sbjct:   67 TAVAFSPDGQRIVSGSEDGTLRLWDAQTGAPIGEPLRGH 105
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C3LUL7_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3LUL7_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 1.250e-5
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 SAATAVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGH 129
            S+ ++VAFSP+GK LASG+ D  + LWD+  G  + EPLKGH
Sbjct:   22 SSISSVAFSPDGKTLASGSNDTTIRLWDVASGGPVGEPLKGH 63
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A0C2WHN7_AMAMK (NACHT domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WHN7_AMAMK)

HSP 1 Score: 50.8 bits (120), Expect = 1.860e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   19 VAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRVSS 147
            VAFS +GK +ASG+ED  + +WD E G L+ EPLKGH G V+S
Sbjct:  587 VAFSHDGKWVASGSEDRTIRIWDTEVGVLVGEPLKGHNGPVTS 629
[Close]
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Match: A0A8H7FFE9_9AGAM (NACHT domain-containing protein n=1 Tax=Athelia sp. TMB TaxID=2748771 RepID=A0A8H7FFE9_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 1.870e-5
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 AVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRVSS 147
            AVAFSP+G+ +ASG+ DG+V +W+ E G L   P +GH G +SS
Sbjct: 1302 AVAFSPDGQYMASGSADGSVRMWNTETGDLAAPPFEGHTGSISS 1345
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56575.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A0C3LHK7_9AGAM1.240e-653.49Uncharacterized protein n=1 Tax=Tulasnella calospo... [more]
A0A8H5FH82_9AGAR2.090e-653.66NACHT domain-containing protein n=1 Tax=Tulosesus ... [more]
A0A0C3QQV2_9AGAM3.320e-658.54Uncharacterized protein (Fragment) n=1 Tax=Tulasne... [more]
A0A0C3QND1_9AGAM3.860e-666.67Uncharacterized protein (Fragment) n=1 Tax=Tulasne... [more]
A0A8H8JWU0_9AGAM3.900e-651.16NACHT domain-containing protein n=1 Tax=Ceratobasi... [more]
A0A0C3Q5P0_9AGAM9.270e-652.27Uncharacterized protein (Fragment) n=1 Tax=Tulasne... [more]
A0A7C7UZ02_9RHOB1.120e-556.41WD40 repeat domain-containing protein n=1 Tax=Rose... [more]
A0A0C3LUL7_9AGAM1.250e-554.76Uncharacterized protein (Fragment) n=1 Tax=Tulasne... [more]
A0A0C2WHN7_AMAMK1.860e-558.14NACHT domain-containing protein (Fragment) n=1 Tax... [more]
A0A8H7FFE9_9AGAM1.870e-552.27NACHT domain-containing protein n=1 Tax=Athelia sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56575contigP-wetherbeei_contig56575:24..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog522306.CAP2UW1_3022
PFAMsWD40
Model size237
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-05
EggNOG OGsCOG1672@1|root,COG2319@1|root,COG1672@2|Bacteria,COG2319@2|Bacteria,1MWJA@1224|Proteobacteria,2VI8Q@28216|Betaproteobacteria
DescriptionWD40 repeats
Cds size237
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.7788508-CDS-P-wetherbeei_contig56575:23..2601683186840.7788508-CDS-P-wetherbeei_contig56575:23..260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56575 24..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56575.1.1prot_P-wetherbeei_contig56575.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56575 24..260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56575.1.1

>prot_P-wetherbeei_contig56575.1.1 ID=prot_P-wetherbeei_contig56575.1.1|Name=mRNA_P-wetherbeei_contig56575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
GSAATAVAFSPNGKCLASGTEDGAVALWDIERGSLLWEPLKGHWGRVSSV
AFSDDGRLLLSCSWDATLRIWDIACGKEL
back to top

mRNA from alignment at P-wetherbeei_contig56575:24..260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56575.1.1 ID=mRNA_P-wetherbeei_contig56575.1.1|Name=mRNA_P-wetherbeei_contig56575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig56575:24..260+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGTGCAGCAACAGCTGTTGCATTTTCTCCAAACGGTAAATGCTTAGC
CTCTGGAACTGAAGATGGCGCTGTTGCGCTATGGGATATCGAGCGAGGAT
CGTTATTATGGGAACCGTTAAAAGGTCATTGGGGGAGGGTGAGTTCGGTC
GCGTTTTCGGACGATGGGCGGTTGTTGTTGTCCTGCTCCTGGGATGCGAC
GCTGAGAATATGGGATATTGCTTGCGGAAAGGAGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56575:24..260+

>mRNA_P-wetherbeei_contig56575.1.1 ID=mRNA_P-wetherbeei_contig56575.1.1|Name=mRNA_P-wetherbeei_contig56575.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig56575:24..260+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGTGCAGCAACAGCTGTTGCATTTTCTCCAAACGGTAAATGCTTAGC
CTCTGGAACTGAAGATGGCGCTGTTGCGCTATGGGATATCGAGCGAGGAT
CGTTATTATGGGAACCGTTAAAAGGTCATTGGGGGAGGGTGAGTTCGGTC
GCGTTTTCGGACGATGGGCGGTTGTTGTTGTCCTGCTCCTGGGATGCGAC
GCTGAGAATATGGGATATTGCTTGCGGAAAGGAGCTG
back to top