mRNA_P-wetherbeei_contig56574.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56574.2.1
Unique NamemRNA_P-wetherbeei_contig56574.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: A0A535ILL7_9CHLR (N-formylglutamate amidohydrolase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535ILL7_9CHLR)

HSP 1 Score: 134 bits (337), Expect = 4.450e-39
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHA 261
            K RAVELGIL DRD  +ADKLI +FP VD RLNEPYGP DGV+HTLNLHAAPRGL+  MIEIRNDF+  E GQ EWA+RL+  L+HA
Sbjct:   15 KPRAVELGILHDRDTGLADKLITSFPTVDARLNEPYGPDDGVLHTLNLHAAPRGLRHAMIEIRNDFLLGEHGQVEWAERLSAALVHA 101          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: A0A2W2B1U9_9HYPH (N-formylglutamate amidohydrolase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2B1U9_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 2.490e-38
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAITK 270
            K R+VELGIL DRD  ++ KLIK+FP +D RLNEPYGPKDGV+HTLNLH   RGL+  MIEIRND +A ERGQ+EWAQRL++PLI A TK
Sbjct:  160 KPRSVELGILHDRDTTLSSKLIKSFPNIDARLNEPYGPKDGVLHTLNLHGFARGLQHAMIEIRNDLVATERGQDEWAQRLSVPLIQAATK 249          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: UPI001991AECC (N-formylglutamate amidohydrolase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001991AECC)

HSP 1 Score: 137 bits (344), Expect = 4.240e-38
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHA 261
            K R VELGIL DRDA  +  LIK F KVD RLNEPYGPKDGV+HTLNLHAAPRGLK  M+EIRND IA+ERGQ EWAQR+++PLI A
Sbjct:  177 KSRKVELGILHDRDASFSSMLIKRFSKVDARLNEPYGPKDGVLHTLNLHAAPRGLKHAMLEIRNDLIASERGQQEWAQRISVPLIQA 263          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: UPI0018C51B9C (N-formylglutamate amidohydrolase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C51B9C)

HSP 1 Score: 125 bits (315), Expect = 6.320e-34
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAITK 270
            K R V+LG+LFDRDA +A +L+K++P V  +LNEPYGPKDGVMH LNLHAAPRGL  +MIEI ND +  ER Q +WAQRL++PLI A  K
Sbjct:  158 KRREVDLGLLFDRDAWLAQQLVKSYPDVATKLNEPYGPKDGVMHLLNLHAAPRGLHHLMIEICNDLLETERNQQQWAQRLSVPLIQAAIK 247          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: A0A847ZR45_9HYPH (N-formylglutamate amidohydrolase n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZR45_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 6.070e-29
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAITK 270
            K R +++G LFDRDA +A+ LIK FP    RLNEPYGPKDGVM+  NLHA PRGLK VMIEIRND I +  GQN W+  L++PL  A  K
Sbjct:  160 KPRDLDVGFLFDRDAWLANFLIKVFPTEKARLNEPYGPKDGVMYLHNLHAVPRGLKHVMIEIRNDLIGDAVGQNAWSNYLSVPLAQAAIK 249          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: A0A537NQM4_9PROT (N-formylglutamate amidohydrolase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NQM4_9PROT)

HSP 1 Score: 103 bits (258), Expect = 2.690e-25
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    7 RAVELGILFDRDARIADKLIKAFPKVD---VRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAIT 267
            R ++LGIL DRD R+AD ++    ++    VR NEPYGP+DGV HTLNLH  PRGL  VM+EIRND I++E GQ +WA RLA  L  AIT
Sbjct:  162 RQLDLGILHDRDTRLADLVLGLCGRMKDIVVRRNEPYGPQDGVCHTLNLHGGPRGLNHVMLEIRNDLISHEAGQTQWASRLATILEQAIT 251          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: UPI0012EE9EE5 (N-formylglutamate amidohydrolase n=1 Tax=Mesorhizobium xinjiangense TaxID=2678685 RepID=UPI0012EE9EE5)

HSP 1 Score: 95.9 bits (237), Expect = 3.160e-22
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    7 RAVELGILFDRDARIADK---LIKAFPKVDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAI 264
            R VELGIL D D R+AD    LI+   +  VR NEPYGP DGV HTL +H   RG+ +VM+EIRND IAN  GQ EWA RLA  L  A+
Sbjct:  159 REVELGILHDGDTRLADAMLALIEGNAEPVVRRNEPYGPDDGVTHTLKMHGLSRGIPNVMLEIRNDLIANPTGQAEWAARLAALLRRAV 247          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: UPI0019078279 (N-formylglutamate amidohydrolase n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019078279)

HSP 1 Score: 95.9 bits (237), Expect = 3.470e-22
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    7 RAVELGILFDRDARIADKLIKAFPK---VDVRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAIT 267
            R ++LG+L DRD R+AD ++    +   V VR NEPYGP+DGV HTLNLH   RGL  VM+EIRND I +E GQ +WA RLA  L  A++
Sbjct:  162 RHLDLGVLHDRDTRLADLVLGLCGRMKDVVVRRNEPYGPQDGVCHTLNLHGGARGLHHVMLEIRNDLINHEAGQVQWAGRLAQVLEQAVS 251          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: A0A6G6WP68_9HYPH (N-formylglutamate amidohydrolase n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WP68_9HYPH)

HSP 1 Score: 94.7 bits (234), Expect = 9.610e-22
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    7 RAVELGILFDRDARIADKLIKAFPKVD---VRLNEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAIT 267
            R ++LG+L DRD R+AD ++    ++    VR NEPYGP+DGV HTLNLH   RG+  VM+EIRND I  E GQ +WA RLA  L  A++
Sbjct:  162 RHLDLGVLHDRDTRLADLVLGLAGRMKDIVVRRNEPYGPQDGVCHTLNLHGGTRGIHHVMLEIRNDLIDQEAGQAQWAARLASVLEQAVS 251          
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Match: UPI001AE30B39 (N-formylglutamate amidohydrolase n=1 Tax=Rhizobium halophytocola TaxID=735519 RepID=UPI001AE30B39)

HSP 1 Score: 94.4 bits (233), Expect = 1.190e-21
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 KERAVELGILFDRDARIADKLIKAFP-KVDVRL--NEPYGPKDGVMHTLNLHAAPRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAITK 270
            K RAVE+GIL D D+R+AD ++ A     D RL  N+PYGP+DGV HTL LHA PRGL +VMIE+RND IANE  Q + A  L+  L  A+++
Sbjct:  163 KSRAVEIGILHDDDSRLADAMLTAGEGNSDYRLGRNDPYGPRDGVTHTLRLHALPRGLMNVMIEVRNDLIANEADQQKAASYLSALLQSALSE 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56574.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A535ILL7_9CHLR4.450e-3972.41N-formylglutamate amidohydrolase (Fragment) n=1 Ta... [more]
A0A2W2B1U9_9HYPH2.490e-3870.00N-formylglutamate amidohydrolase n=1 Tax=Aestuarii... [more]
UPI001991AECC4.240e-3874.71N-formylglutamate amidohydrolase n=1 Tax=Hyphomicr... [more]
UPI0018C51B9C6.320e-3464.44N-formylglutamate amidohydrolase n=1 Tax=Aestuarii... [more]
A0A847ZR45_9HYPH6.070e-2961.11N-formylglutamate amidohydrolase n=1 Tax=Phyllobac... [more]
A0A537NQM4_9PROT2.690e-2557.78N-formylglutamate amidohydrolase n=2 Tax=Alphaprot... [more]
UPI0012EE9EE53.160e-2257.30N-formylglutamate amidohydrolase n=1 Tax=Mesorhizo... [more]
UPI00190782793.470e-2254.44N-formylglutamate amidohydrolase n=1 Tax=Aestuarii... [more]
A0A6G6WP68_9HYPH9.610e-2252.22N-formylglutamate amidohydrolase n=1 Tax=Nordella ... [more]
UPI001AE30B391.190e-2154.84N-formylglutamate amidohydrolase n=1 Tax=Rhizobium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56574contigP-wetherbeei_contig56574:245..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1336249.JADW01000005_gene2305
PFAMsFGase
Model size273
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.86e-21
EggNOG OGsCOG3931@1|root,COG3931@2|Bacteria,1R6N8@1224|Proteobacteria,2U5EQ@28211|Alphaproteobacteria,4B8UT@82115|Rhizobiaceae
DescriptionN-formylglutamate amidohydrolase
Cds size273
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.7380466-CDS-P-wetherbeei_contig56574:244..5171683186840.7380466-CDS-P-wetherbeei_contig56574:244..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56574 245..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56574.2.1prot_P-wetherbeei_contig56574.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56574 245..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56574.2.1

>prot_P-wetherbeei_contig56574.2.1 ID=prot_P-wetherbeei_contig56574.2.1|Name=mRNA_P-wetherbeei_contig56574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
KERAVELGILFDRDARIADKLIKAFPKVDVRLNEPYGPKDGVMHTLNLHA
APRGLKSVMIEIRNDFIANERGQNEWAQRLAMPLIHAITK*
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mRNA from alignment at P-wetherbeei_contig56574:245..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56574.2.1 ID=mRNA_P-wetherbeei_contig56574.2.1|Name=mRNA_P-wetherbeei_contig56574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56574:245..517- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAACGGGCGGTGGAGCTCGGCATCCTGTTTGACCGGGATGCGCGCAT TGCCGACAAGCTGATCAAGGCCTTCCCGAAAGTGGACGTGCGGCTTAATG AGCCATATGGGCCGAAGGATGGAGTGATGCACACTCTCAACCTGCATGCG GCGCCCCGGGGGCTCAAATCCGTCATGATCGAAATTCGCAATGACTTCAT TGCCAATGAACGCGGACAAAATGAATGGGCGCAGCGCCTGGCGATGCCGC TCATTCACGCGATAACAAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56574:245..517-

>mRNA_P-wetherbeei_contig56574.2.1 ID=mRNA_P-wetherbeei_contig56574.2.1|Name=mRNA_P-wetherbeei_contig56574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56574:245..517- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAACGGGCGGTGGAGCTCGGCATCCTGTTTGACCGGGATGCGCGCAT
TGCCGACAAGCTGATCAAGGCCTTCCCGAAAGTGGACGTGCGGCTTAATG
AGCCATATGGGCCGAAGGATGGAGTGATGCACACTCTCAACCTGCATGCG
GCGCCCCGGGGGCTCAAATCCGTCATGATCGAAATTCGCAATGACTTCAT
TGCCAATGAACGCGGACAAAATGAATGGGCGCAGCGCCTGGCGATGCCGC
TCATTCACGCGATAACAAAATAG
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