mRNA_P-wetherbeei_contig5657.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5657.2.1
Unique NamemRNA_P-wetherbeei_contig5657.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5657.2.1 vs. uniprot
Match: D7G591_ECTSI (Calcium uniporter protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G591_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.210e-5
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = -2 
Query:    3 QIYSWDIMEPASYFLMLSYGVAGSLYFAT 89
            ++YSWD+MEPA+YFLMLSY V  SLYF+T
Sbjct:  331 EVYSWDVMEPATYFLMLSYSVGSSLYFST 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5657.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G591_ECTSI8.210e-572.41Calcium uniporter protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5657contigP-wetherbeei_contig5657:404..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.566151-UTR-P-wetherbeei_contig5657:403..4411683186840.566151-UTR-P-wetherbeei_contig5657:403..441Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5657 404..441 -
1683186840.5985951-UTR-P-wetherbeei_contig5657:756..9251683186840.5985951-UTR-P-wetherbeei_contig5657:756..925Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5657 757..925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.5847292-CDS-P-wetherbeei_contig5657:441..7561683186840.5847292-CDS-P-wetherbeei_contig5657:441..756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5657 442..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5657.2.1prot_P-wetherbeei_contig5657.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5657 442..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5657.2.1

>prot_P-wetherbeei_contig5657.2.1 ID=prot_P-wetherbeei_contig5657.2.1|Name=mRNA_P-wetherbeei_contig5657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MRLYDRLVKDRQILAERHGLLLRHHCCCSRRRSAVVDQPSRVICYSHASA
WQQPVTSRGFQSARHGPSRRNDACSSPTFPSLRSPSEPKSVRCFGPSRAG
ALTS*
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mRNA from alignment at P-wetherbeei_contig5657:404..925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5657.2.1 ID=mRNA_P-wetherbeei_contig5657.2.1|Name=mRNA_P-wetherbeei_contig5657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig5657:404..925- (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGGCGAAGTAGAGGCTGCCGGCGACGCCGTACGAGAGCATGAGAAA
GTACGACGCCGGCTCCATGATGTCCCAGCTGTAGATCTGCGTGCAGGCAA
AAGTTCGATGACAGAAGCAAAAAGCGGACGAGGGAATAGTGTAACAGATG
GGAAGTGACGAGCCAACTAATGCGTTTGTACGATAGATTAGTGAAGGACC
GGCAGATCCTGGCGGAAAGGCACGGCCTCCTCCTTCGTCACCACTGCTGC
TGCTCTCGCCGGCGTTCCGCAGTCGTTGACCAGCCATCAAGGGTCATCTG
CTACTCCCATGCATCGGCTTGGCAACAGCCAGTAACCTCACGCGGATTCC
AGTCAGCCCGACATGGTCCCTCAAGAAGAAACGACGCCTGCTCCTCTCCC
ACTTTCCCTTCTCTTCGTTCGCCTTCGGAACCAAAGTCCGTCCGCTGCTT
CGGCCCTAGCCGAGCCGGCGCACTGACCTCGTAGACGAGATAGGCGAGGC
CGCCGAACTGCGCCATGAGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5657:404..925-

>mRNA_P-wetherbeei_contig5657.2.1 ID=mRNA_P-wetherbeei_contig5657.2.1|Name=mRNA_P-wetherbeei_contig5657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig5657:404..925- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTTGTACGATAGATTAGTGAAGGACCGGCAGATCCTGGCGGAAAG
GCACGGCCTCCTCCTTCGTCACCACTGCTGCTGCTCTCGCCGGCGTTCCG
CAGTCGTTGACCAGCCATCAAGGGTCATCTGCTACTCCCATGCATCGGCT
TGGCAACAGCCAGTAACCTCACGCGGATTCCAGTCAGCCCGACATGGTCC
CTCAAGAAGAAACGACGCCTGCTCCTCTCCCACTTTCCCTTCTCTTCGTT
CGCCTTCGGAACCAAAGTCCGTCCGCTGCTTCGGCCCTAGCCGAGCCGGC
GCACTGACCTCGTAG
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