mRNA_P-wetherbeei_contig56563.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56563.2.1
Unique NamemRNA_P-wetherbeei_contig56563.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A2A6LTC8_RHIFR (CENP-V/GFA domain-containing protein n=1 Tax=Rhizobium fredii TaxID=380 RepID=A0A2A6LTC8_RHIFR)

HSP 1 Score: 94.0 bits (232), Expect = 3.660e-23
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = -1
Query:    1 DAMLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRRD 147
            +AMLRGACLCG V+VEV G IEHQPEACHC MCRKQSGHVL+AVNVRRD
Sbjct:    6 EAMLRGACLCGRVNVEVAGRIEHQPEACHCKMCRKQSGHVLAAVNVRRD 54          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: G9AG84_RHIFH (CENP-V/GFA domain-containing protein n=11 Tax=Hyphomicrobiales TaxID=356 RepID=G9AG84_RHIFH)

HSP 1 Score: 93.2 bits (230), Expect = 4.430e-23
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    1 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRRD 141
            MLRGACLC  VSVEV GPIEHQPEACHC MCRKQSGHVL+AVNVRRD
Sbjct:    1 MLRGACLCDRVSVEVAGPIEHQPEACHCKMCRKQSGHVLAAVNVRRD 47          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A846FKJ4_9CYAN (GFA family protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FKJ4_9CYAN)

HSP 1 Score: 70.1 bits (170), Expect = 5.410e-14
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = -1
Query:    4 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRR 141
            ML G+CLCG V + V G +EH PEACHC  CRKQSG  L AVNVR+
Sbjct:    1 MLSGSCLCGTVQISVQGQLEHDPEACHCVQCRKQSGSFLIAVNVRK 46          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A1I5B431_9GAMM (Glutathione-dependent formaldehyde-activating enzyme (Fragment) n=2 Tax=Dokdonella immobilis TaxID=578942 RepID=A0A1I5B431_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 9.570e-13
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = -1
Query:    4 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRR 141
            ML+GACLC GVS E+ G + H P+ACHC  CR+ SGH   + NV R
Sbjct:    1 MLKGACLCAGVSFEIAGELLHAPDACHCSQCRRHSGHYFVSANVAR 46          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A345RGL3_9RHOB (Aldehyde-activating protein n=2 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID=A0A345RGL3_9RHOB)

HSP 1 Score: 62.8 bits (151), Expect = 3.790e-11
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = -1
Query:   10 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNV 141
            ML+G+CLCG +  E TG     P ACHCG CRKQSGH  +AVNV
Sbjct:    2 MLKGSCLCGAIKFEATGTAR-DPAACHCGQCRKQSGHYWAAVNV 44          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: UPI001FB12610 (GFA family protein n=2 Tax=Parasphingorhabdus sp. JHSY0214 TaxID=2806553 RepID=UPI001FB12610)

HSP 1 Score: 60.1 bits (144), Expect = 4.470e-10
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = -1
Query:   10 RDAMLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNV 150
            +D +  G+CLCG VS+ VTG +  QP+ACHC  CRKQ+GH  ++ +V
Sbjct:    2 KDTIYNGSCLCGAVSIMVTGDLP-QPDACHCTQCRKQTGHYFASTDV 47          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: UPI001A241091 (GFA family protein n=1 Tax=Rhodobacteraceae bacterium F11138 TaxID=2794865 RepID=UPI001A241091)

HSP 1 Score: 59.7 bits (143), Expect = 5.800e-10
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = -1
Query:    4 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRR 141
            M++G+C CGGV+ ++ GP++  P  CHCG CRKQSGH+ ++   R+
Sbjct:    1 MIKGSCNCGGVAFQIDGPLQ-PPSVCHCGQCRKQSGHIWASAVTRQ 45          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: UPI001574D563 (GFA family protein n=4 Tax=Agrobacterium rhizogenes TaxID=359 RepID=UPI001574D563)

HSP 1 Score: 59.3 bits (142), Expect = 8.210e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = -1
Query:    4 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRR 141
            M RG+CLCG V+ E+ G + + P+ACHC MCRKQSGH  ++ +V R
Sbjct:    1 MHRGSCLCGAVTFEIEGDL-NPPDACHCTMCRKQSGHFFASTDVPR 45          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A238KVT4_9RHOB (Glutathione-dependent formaldehyde-activating enzyme n=1 Tax=Actibacterium lipolyticum TaxID=1524263 RepID=A0A238KVT4_9RHOB)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-9
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = -1
Query:   19 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSA 141
            ML+G+CLCGG+S  V+G +   P  CHCG CRKQSGHV S+
Sbjct:    1 MLKGSCLCGGISFTVSGDVPG-PSICHCGQCRKQSGHVWSS 40          
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Match: A0A2D6H5D7_9SPHN (GFA family protein n=2 Tax=Blastomonas TaxID=150203 RepID=A0A2D6H5D7_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-9
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = -1
Query:    4 MLRGACLCGGVSVEVTGPIEHQPEACHCGMCRKQSGHVLSAVNVRR 141
            M  G+CLCG ++  V+ P++ +P+ACHCG CRKQSGH  ++ +V+R
Sbjct:    1 MHTGSCLCGAIAFTVSAPLK-EPDACHCGQCRKQSGHYWASTDVQR 45          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56563.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A6LTC8_RHIFR3.660e-2385.71CENP-V/GFA domain-containing protein n=1 Tax=Rhizo... [more]
G9AG84_RHIFH4.430e-2389.36CENP-V/GFA domain-containing protein n=11 Tax=Hyph... [more]
A0A846FKJ4_9CYAN5.410e-1465.22GFA family protein n=1 Tax=Cyanothece sp. SIO1E1 T... [more]
A0A1I5B431_9GAMM9.570e-1356.52Glutathione-dependent formaldehyde-activating enzy... [more]
A0A345RGL3_9RHOB3.790e-1161.36Aldehyde-activating protein n=2 Tax=Sulfitobacter ... [more]
UPI001FB126104.470e-1051.06GFA family protein n=2 Tax=Parasphingorhabdus sp. ... [more]
UPI001A2410915.800e-1047.83GFA family protein n=1 Tax=Rhodobacteraceae bacter... [more]
UPI001574D5638.210e-1054.35GFA family protein n=4 Tax=Agrobacterium rhizogene... [more]
A0A238KVT4_9RHOB1.110e-960.98Glutathione-dependent formaldehyde-activating enzy... [more]
A0A2D6H5D7_9SPHN1.110e-950.00GFA family protein n=2 Tax=Blastomonas TaxID=15020... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56563contigP-wetherbeei_contig56563:1..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.3667436-CDS-P-wetherbeei_contig56563:0..1711683186840.3667436-CDS-P-wetherbeei_contig56563:0..171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56563 1..171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56563.2.1prot_P-wetherbeei_contig56563.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56563 1..171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56563.2.1

>prot_P-wetherbeei_contig56563.2.1 ID=prot_P-wetherbeei_contig56563.2.1|Name=mRNA_P-wetherbeei_contig56563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
VAPDIHGREDVAGLFPAHPAMASFRLMFDWACDFDADTAAQARAPQHGVS
PHPTSQV
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mRNA from alignment at P-wetherbeei_contig56563:1..172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56563.2.1 ID=mRNA_P-wetherbeei_contig56563.2.1|Name=mRNA_P-wetherbeei_contig56563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=172bp|location=Sequence derived from alignment at P-wetherbeei_contig56563:1..172+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCCGGACATTCACGGCAGAGAGGACGTGGCCGGATTGTTTCCGGC ACATCCCGCAATGGCAAGCTTCAGGCTGATGTTCGATTGGGCCTGTGACT TCGACGCTGACACCGCCGCACAGGCACGCGCCCCTCAACATGGCGTCTCT CCACATCCGACATCGCAGGTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56563:1..172+

>mRNA_P-wetherbeei_contig56563.2.1 ID=mRNA_P-wetherbeei_contig56563.2.1|Name=mRNA_P-wetherbeei_contig56563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig56563:1..172+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCCGGACATTCACGGCAGAGAGGACGTGGCCGGATTGTTTCCGGC
ACATCCCGCAATGGCAAGCTTCAGGCTGATGTTCGATTGGGCCTGTGACT
TCGACGCTGACACCGCCGCACAGGCACGCGCCCCTCAACATGGCGTCTCT
CCACATCCGACATCGCAGGTC
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