mRNA_P-wetherbeei_contig565.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig565.3.1
Unique NamemRNA_P-wetherbeei_contig565.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: D7FVT6_ECTSI (S1-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT6_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 9.310e-40
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDADGAA 664
            MAG GR+T YRK VTD YL+  PEP E +EI      RGSNI+E++  NGE  LA+LPT+FRKLIWVKRG Y+I S +  D+E +AGE GKVRHRVEHIL +DQI+HL+    WP   +DA G A
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIVLAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWPA--DDAFGGA 123          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A7S1GDQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.970e-37
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDADGAA 664
            MAG  R++ YRK V  + L  + EP EGQ I RV  +RGSN+L+VV   GE GL MLPT++RKL+WVKRG ++IV  A DD+E   G++G VR  V H+L +DQ++HL+  GKWP  F+D DGAA
Sbjct:    1 MAGVKRRSKYRKNVEASVLDEMHEPEEGQIIVRVVASRGSNLLDVVTEAGEGGLCMLPTRYRKLVWVKRGDHLIVDCADDDFETAGGDKGAVRFSVAHVLYKDQVKHLKKIGKWPAAFDD-DGAA 124          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A835YV91_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV91_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.490e-35
Identity = 77/168 (45.83%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYE-NTA----------------------------------------------GERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDA 652
            MAG GR+T+YRK V + YL GLPEP EG  +A+  G+RGSN++EV    GE  LAMLPT+FRKLIWVKRG YV+VS +T D E +TA                                              GE GKVRHRVEH+L++DQ++H+R  GKWP GF+ A
Sbjct:    1 MAGVGRRTNYRKSVQEEYLSGLPEPGEGTAVAKALGSRGSNVIEVELQCGEQSLAMLPTRFRKLIWVKRGDYVLVSTSTGDIETHTAAAAAHARYAVQCNAPAYRPAQRGAHASKPALRRRRSYRAVRTSALDGEEGKVRHRVEHVLSKDQVKHIRKIGKWPAGFDAA 168          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A2D4BRF2_PYTIN (S1-like domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRF2_PYTIN)

HSP 1 Score: 135 bits (341), Expect = 5.510e-35
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFED 649
            M+GSGRK+ YRK VT+  LHG PEP E ++I RV   RG N+ EV D  G   L MLP KFRKLIWVKRG ++IV+++ ++     G++G V   VEHIL +DQI++LR  G WP GF++
Sbjct:    1 MSGSGRKSAYRKGVTNKVLHGNPEPQENEQIVRVIALRGGNLFEVQDAEGATSLTMLPAKFRKLIWVKRGDFLIVASSDNEVSTADGKKGAVTSIVEHILYKDQIKNLRTKGLWPQGFDE 120          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A4D9CWY1_9STRA (S1-like domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWY1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.990e-32
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPT--EGQEIARVCGTRGSNILEV---------VDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFED 649
            M+G+GRK+ YRK VT+  LH  PEP    G+ +ARV  +RG NIL+V          D NG   LA+LPTKFRKLIWVKRG +VIVS  + D++  AGE+GKV+  VEHIL ++Q++HL+  G WP  F +
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPKSGEDENG-GSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPAVFSE 130          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A812LGH3_9DINO (Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LGH3_9DINO)

HSP 1 Score: 128 bits (321), Expect = 5.650e-32
Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDAD--GAAA 667
            MAG  R+T YRKQV    L     P +GQEI ++  + GSNILEV D  GE    +LPTK+RKLIWVKRG ++IVS   +DY+  +G +G V++ VEHILT   I+HL+  G WP  F+  +  GAAA
Sbjct:    1 MAGVKRRTKYRKQVEADVLDAFHTPEDGQEIVQIVQSHGSNILEVRDAEGENAKCILPTKYRKLIWVKRGDFLIVSKGAEDYDTASGNKGTVKYMVEHILTASSIKHLKKEGLWPATFDTTNPRGAAA 128          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: H3GIY3_PHYRM (S1-like domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIY3_PHYRM)

HSP 1 Score: 127 bits (320), Expect = 8.360e-32
Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTA-GERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDADGAAA 667
            M+G+GRK+ YRK VT   L+G PEP E + I RV   RGSN+ EVVD NG   + MLPTKFRKLIWVKRG ++IVS        TA G++G V   VEHIL +DQI++L++   WP  F++     A
Sbjct:    1 MSGAGRKSAYRKGVTKRVLYGDPEPKENELIVRVVALRGSNLFEVVDANGTKAVTMLPTKFRKLIWVKRGDFLIVSEGDGGETTTAKGKKGAVTSIVEHILYKDQIKNLKLKDLWPEAFDETPAGGA 127          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A0P1B638_PLAHL (Eukaryotic translation initiation factor 1a n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B638_PLAHL)

HSP 1 Score: 127 bits (319), Expect = 9.110e-32
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTA-GERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDA 652
            M+GSGRK+ YRK VT   L+G PEP + + I RV   RG+N+ EVVD +G   + MLPTKFRKLIWVKRG Y+IV         TA G++G V   VEHIL +DQI HL+    WP  F+D+
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGEPEPKDNESIVRVIALRGTNLFEVVDVSGTKSVTMLPTKFRKLIWVKRGDYLIVGEGDGGETTTATGKKGAVTSIVEHILYKDQIEHLKQKKLWPSAFDDS 122          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: A0A812VYN2_SYMMI (Eif1ad protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYN2_SYMMI)

HSP 1 Score: 127 bits (318), Expect = 1.080e-31
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGL--AMLPTKFRKLIWVKRGGYVIVSAATDDYENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFE 646
            M+GSGRK+HYRK V D++L+G  EP E   I RV G+RG+N+ E+ + +G  GL  AMLP KF+KLIWV+RG +VI ++A DD     GE  KV++ ++HIL+++QI+H+   G WP  FE
Sbjct:    1 MSGSGRKSHYRKSVQDSFLNGFLEPEENDSICRVTGSRGTNLFEL-ELSGGGGLELAMLPNKFKKLIWVRRGDFVIAASAVDDCTTATGEDVKVKYMIKHILSKEQIKHIVDIGIWPEDFE 120          
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Match: G4YPL5_PHYSP (S1-like domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPL5_PHYSP)

HSP 1 Score: 125 bits (314), Expect = 6.140e-31
Identity = 64/127 (50.39%), Postives = 82/127 (64.57%), Query Frame = 2
Query:  290 MAGSGRKTHYRKQVTDAYLHGLPEPTEGQEIARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDDYENTA-GERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDADGAAA 667
            M+G+GRK+ YRK VT   L+G PEP E + I RV   RGSN+ EVVD  G   + MLPTKFRKLIWVKRG ++IV         TA G++G V   VEHIL +DQI++L+    WP  F+D+  + A
Sbjct:    1 MSGAGRKSAYRKGVTSRVLYGDPEPKENELIVRVTALRGSNLFEVVDAEGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKDLWPAAFDDSSASTA 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig565.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT6_ECTSI9.310e-4059.20S1-like domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1GDQ2_9STRA7.970e-3753.60Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835YV91_9STRA1.490e-3545.83S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A2D4BRF2_PYTIN5.510e-3552.50S1-like domain-containing protein n=1 Tax=Pythium ... [more]
A0A4D9CWY1_9STRA1.990e-3251.15S1-like domain-containing protein n=3 Tax=Monodops... [more]
A0A812LGH3_9DINO5.650e-3250.00Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
H3GIY3_PHYRM8.360e-3251.18S1-like domain-containing protein n=1 Tax=Phytopht... [more]
A0A0P1B638_PLAHL9.110e-3252.46Eukaryotic translation initiation factor 1a n=1 Ta... [more]
A0A812VYN2_SYMMI1.080e-3150.41Eif1ad protein n=1 Tax=Symbiodinium microadriaticu... [more]
G4YPL5_PHYSP6.140e-3150.39S1-like domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig565contigP-wetherbeei_contig565:2055..3129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVT6
Preferred nameEIF1AD
PFAMseIF-1a
Model size1075
Max annot lvl2759|Eukaryota
KEGG koko:K15025
Hectar predicted targeting categorysignal peptide
GOsGO:0002181,GO:0002183,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue1.51e-41
EggNOG OGsKOG2925@1|root,KOG2925@2759|Eukaryota
Ec32 ortholog descriptionRNA-binding domain, S1, IF1 type
Ec32 orthologEc-01_002080.1
Descriptiontranslation initiation factor activity
Cds size819
COG categoryJ
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.73199-UTR-P-wetherbeei_contig565:2054..22861683186839.73199-UTR-P-wetherbeei_contig565:2054..2286Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig565 2055..2286 +
1683186839.753118-UTR-P-wetherbeei_contig565:3105..31291683186839.753118-UTR-P-wetherbeei_contig565:3105..3129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig565 3106..3129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.7422452-CDS-P-wetherbeei_contig565:2286..31051683186839.7422452-CDS-P-wetherbeei_contig565:2286..3105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig565 2287..3105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig565.3.1prot_P-wetherbeei_contig565.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig565 2287..3105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig565.3.1

>prot_P-wetherbeei_contig565.3.1 ID=prot_P-wetherbeei_contig565.3.1|Name=mRNA_P-wetherbeei_contig565.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
MRSSIFLSLSALLCAGARKMAGSGRKTHYRKQVTDAYLHGLPEPTEGQEI
ARVCGTRGSNILEVVDCNGEAGLAMLPTKFRKLIWVKRGGYVIVSAATDD
YENTAGERGKVRHRVEHILTRDQIRHLRVSGKWPPGFEDADGAAATAAPG
PSAADEDDGSGGDSDGDDDGDGENVAAMAMVVKAGAAKAAAGGGASSGAA
TDGAAGEAGEAEREGEEEEEEEEEESDADEALNSILGPNRNRLAMLQLRQ
ERGDDDDISDDESVEESDGPMS*
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mRNA from alignment at P-wetherbeei_contig565:2055..3129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig565.3.1 ID=mRNA_P-wetherbeei_contig565.3.1|Name=mRNA_P-wetherbeei_contig565.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1075bp|location=Sequence derived from alignment at P-wetherbeei_contig565:2055..3129+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGGGCCTTTTCCAATCAGAGAAAGGGCTGAAGGCGTTGCAGAATCTGG CGAACGCTTGACCATAAATGAAGGCTGACATTTTCTTGTGCGTCGTCTCC TCGACCGTGGAAATGTGGCGATGCAGACCTCTCGCGACTTGGGATCAAGC GCTTGCAAAATCTTATCGTTTATTATCTGCAATGACGAAAGCGTATTCGT GAAGAAATGTTGTGGGATCAGATTAGATTGCAATGCGGTCTTCCATTTTT CTTTCTCTTTCCGCTCTTCTCTGTGCAGGCGCTAGAAAAATGGCAGGATC AGGGCGGAAAACGCACTACCGGAAGCAGGTGACGGATGCATACCTCCACG GGCTGCCCGAGCCCACTGAGGGCCAGGAGATTGCGCGCGTCTGCGGCACC CGCGGCTCCAACATCCTCGAAGTAGTGGATTGCAACGGCGAGGCAGGGCT GGCGATGCTGCCCACAAAGTTCCGGAAATTGATCTGGGTGAAGCGCGGCG GCTATGTTATCGTCTCGGCGGCGACCGACGACTACGAAAACACCGCCGGG GAGCGCGGCAAGGTGCGCCACCGCGTAGAACACATTCTGACGCGCGACCA GATTCGGCACCTGCGTGTTTCGGGCAAGTGGCCGCCGGGATTTGAGGACG CCGATGGCGCCGCTGCCACGGCGGCGCCGGGGCCTTCGGCGGCCGACGAA GACGACGGGAGCGGCGGAGACAGCGACGGCGACGACGATGGAGACGGCGA AAATGTGGCGGCGATGGCAATGGTGGTGAAGGCGGGAGCGGCGAAGGCAG CAGCAGGTGGCGGAGCGTCATCTGGCGCGGCGACGGACGGCGCGGCTGGG GAGGCGGGGGAGGCGGAGCGAGAAGGAGAAGAGGAAGAAGAGGAAGAGGA GGAGGAGAGTGACGCTGATGAAGCACTGAACAGCATCCTGGGTCCGAACC GAAACCGCCTGGCGATGCTGCAGCTGCGGCAAGAGCGCGGAGACGACGAC GATATCAGCGACGACGAGAGCGTCGAAGAAAGCGACGGCCCCATGAGTTA GGTATGAAAATAAATTTTGTAGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig565:2055..3129+

>mRNA_P-wetherbeei_contig565.3.1 ID=mRNA_P-wetherbeei_contig565.3.1|Name=mRNA_P-wetherbeei_contig565.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig565:2055..3129+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTCTTCCATTTTTCTTTCTCTTTCCGCTCTTCTCTGTGCAGGCGC
TAGAAAAATGGCAGGATCAGGGCGGAAAACGCACTACCGGAAGCAGGTGA
CGGATGCATACCTCCACGGGCTGCCCGAGCCCACTGAGGGCCAGGAGATT
GCGCGCGTCTGCGGCACCCGCGGCTCCAACATCCTCGAAGTAGTGGATTG
CAACGGCGAGGCAGGGCTGGCGATGCTGCCCACAAAGTTCCGGAAATTGA
TCTGGGTGAAGCGCGGCGGCTATGTTATCGTCTCGGCGGCGACCGACGAC
TACGAAAACACCGCCGGGGAGCGCGGCAAGGTGCGCCACCGCGTAGAACA
CATTCTGACGCGCGACCAGATTCGGCACCTGCGTGTTTCGGGCAAGTGGC
CGCCGGGATTTGAGGACGCCGATGGCGCCGCTGCCACGGCGGCGCCGGGG
CCTTCGGCGGCCGACGAAGACGACGGGAGCGGCGGAGACAGCGACGGCGA
CGACGATGGAGACGGCGAAAATGTGGCGGCGATGGCAATGGTGGTGAAGG
CGGGAGCGGCGAAGGCAGCAGCAGGTGGCGGAGCGTCATCTGGCGCGGCG
ACGGACGGCGCGGCTGGGGAGGCGGGGGAGGCGGAGCGAGAAGGAGAAGA
GGAAGAAGAGGAAGAGGAGGAGGAGAGTGACGCTGATGAAGCACTGAACA
GCATCCTGGGTCCGAACCGAAACCGCCTGGCGATGCTGCAGCTGCGGCAA
GAGCGCGGAGACGACGACGATATCAGCGACGACGAGAGCGTCGAAGAAAG
CGACGGCCCCATGAGTTAG
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