mRNA_P-wetherbeei_contig56280.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56280.1.1
Unique NamemRNA_P-wetherbeei_contig56280.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56280.1.1 vs. uniprot
Match: UPI001300778D (tetratricopeptide repeat protein n=1 Tax=Steroidobacter agariperforans TaxID=268404 RepID=UPI001300778D)

HSP 1 Score: 65.1 bits (157), Expect = 2.170e-9
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:   55 GDDSELQIAEEQLTQILSRNPSYAPAYVELARIEIKRSLLVNFDHEAVALESAESMLKKAEILDPTYADSHVVASYLYTLKRDFVKSDEHYNRAKKLNSPSPWMELNNALSFYRQGRLAEAQRIYESYVT 444
            G  +  + A E+L  +++RNP+YAPAY+E+AR+ ++     N+  E   L  AE++L  A  L P  +D+ ++  Y+YT +R F ++++ +  A +    + W+  N       QG++  A   Y   VT
Sbjct:  165 GSSAATEEAREKLELVIARNPNYAPAYIEMARVAMR----TNWSPEG--LHHAETLLDSALKLSPQSSDAKILLGYVYTHQRRFGEAEKQFTDAARSKPLNLWLWTNWGEMLEMQGKVDPAIAKYREAVT 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001300778D2.170e-930.00tetratricopeptide repeat protein n=1 Tax=Steroidob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56280contigP-wetherbeei_contig56280:50..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388413.ALPR1_14599
PFAMsANAPC3,Guanylate_cyc,HTH_18,TPR_8
Model size462
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.81e-05
EggNOG OGsCOG0457@1|root,COG2207@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2207@2|Bacteria,COG5616@2|Bacteria,4NFW7@976|Bacteroidetes,47N72@768503|Cytophagia
Descriptionhelix_turn_helix, arabinose operon control protein
Cds size462
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.0813181-CDS-P-wetherbeei_contig56280:49..5111683186837.0813181-CDS-P-wetherbeei_contig56280:49..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56280 50..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56280.1.1prot_P-wetherbeei_contig56280.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56280 50..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56280.1.1

>prot_P-wetherbeei_contig56280.1.1 ID=prot_P-wetherbeei_contig56280.1.1|Name=mRNA_P-wetherbeei_contig56280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
PTEASNFADAKHHVDAYLGDDSELQIAEEQLTQILSRNPSYAPAYVELAR
IEIKRSLLVNFDHEAVALESAESMLKKAEILDPTYADSHVVASYLYTLKR
DFVKSDEHYNRAKKLNSPSPWMELNNALSFYRQGRLAEAQRIYESYVTYF
SSNQ
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mRNA from alignment at P-wetherbeei_contig56280:50..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56280.1.1 ID=mRNA_P-wetherbeei_contig56280.1.1|Name=mRNA_P-wetherbeei_contig56280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig56280:50..511- (Phaeothamnion wetherbeei SAG_119_79)
CCTACGGAGGCCTCGAACTTTGCCGACGCGAAACACCACGTAGATGCCTA
TCTGGGTGACGATAGCGAGCTTCAAATTGCTGAGGAGCAGTTGACTCAAA
TTTTGTCAAGAAACCCCAGCTATGCCCCCGCATACGTGGAACTGGCGCGA
ATCGAAATAAAGAGAAGCCTCCTCGTCAACTTCGATCATGAAGCGGTCGC
TTTAGAGTCTGCCGAGTCTATGCTGAAGAAGGCCGAAATCCTAGATCCGA
CTTATGCGGACTCGCATGTGGTGGCGAGTTATCTATACACCTTGAAACGT
GATTTTGTTAAAAGCGACGAACACTACAACCGAGCGAAAAAGCTCAATTC
TCCCAGCCCGTGGATGGAACTGAACAACGCTCTATCCTTCTACCGTCAAG
GACGGTTAGCTGAAGCTCAAAGAATCTATGAGAGTTATGTGACTTATTTC
TCCTCAAACCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56280:50..511-

>mRNA_P-wetherbeei_contig56280.1.1 ID=mRNA_P-wetherbeei_contig56280.1.1|Name=mRNA_P-wetherbeei_contig56280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig56280:50..511- (Phaeothamnion wetherbeei SAG_119_79)
CCTACGGAGGCCTCGAACTTTGCCGACGCGAAACACCACGTAGATGCCTA
TCTGGGTGACGATAGCGAGCTTCAAATTGCTGAGGAGCAGTTGACTCAAA
TTTTGTCAAGAAACCCCAGCTATGCCCCCGCATACGTGGAACTGGCGCGA
ATCGAAATAAAGAGAAGCCTCCTCGTCAACTTCGATCATGAAGCGGTCGC
TTTAGAGTCTGCCGAGTCTATGCTGAAGAAGGCCGAAATCCTAGATCCGA
CTTATGCGGACTCGCATGTGGTGGCGAGTTATCTATACACCTTGAAACGT
GATTTTGTTAAAAGCGACGAACACTACAACCGAGCGAAAAAGCTCAATTC
TCCCAGCCCGTGGATGGAACTGAACAACGCTCTATCCTTCTACCGTCAAG
GACGGTTAGCTGAAGCTCAAAGAATCTATGAGAGTTATGTGACTTATTTC
TCCTCAAACCAA
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