mRNA_P-wetherbeei_contig56275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56275.1.1
Unique NamemRNA_P-wetherbeei_contig56275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A6I3EQL6_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3EQL6_9ACTN)

HSP 1 Score: 173 bits (438), Expect = 1.110e-48
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 LKALRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            L+ LRRKRQ +RL ++EWFDAAY+VY++  FGGG +LWISS + D  V+AS +A  A + PAVLGL+A  A++ GLR G+QGGP+ALE ADVVHVMLAPVDR RAL++P  QR R A  + +  GAI GQLAGRRLPGS  AWA
Sbjct:   11 LRDLRRKRQLHRLGNIEWFDAAYRVYLLGFFGGGTILWISSSVKDGTVAASTSASFASHAPAVLGLIAAMALLAGLRGGSQGGPIALEAADVVHVMLAPVDRRRALLRPAVQRARGAVFAGATAGAIVGQLAGRRLPGSLLAWA 154          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A6J7EKD8_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7EKD8_9ZZZZ)

HSP 1 Score: 160 bits (404), Expect = 1.020e-43
Identity = 81/140 (57.86%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAW 429
            LRR R++NRLA+++WF+AAY+VY+VA   GG  LW+S  + D+ VS +  ADI R GPAV+G+ AV A   G+RSG++GGPLA+E ADV HV+L+PVDR  AL++P  QR RSA+ S  + GA+AG+LAGRRLPGS A+W
Sbjct:   13 LRRARRKNRLAELDWFEAAYRVYLVAFAFGGSALWLSGFVKDEKVSPATVADIYRYGPAVMGMFAVLAFAAGMRSGSRGGPLAIEEADVRHVLLSPVDRRAALLRPATQRARSAAFSGLIVGALAGELAGRRLPGSVASW 152          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A6I3ENA4_9ACTN (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A6I3ENA4_9ACTN)

HSP 1 Score: 162 bits (410), Expect = 1.390e-43
Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 LKALRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            ++ALRR RQ+NRLA++EWF+A Y+VY+ A   GGG+L+IS  + D+PV+ S A D+ + GPA LGL+ + AV  GLRSG++GGPLA+E ADV HV+LAPV R R L++P  QR+RSA  +A   GA+AGQLAGRRLPGS  +WA
Sbjct:  346 VRALRRARQKNRLAEVEWFEALYRVYLAAFIFGGGILFISGLVPDKPVADSMATDVVKFGPAWLGLIGILAVAMGLRSGSRGGPLAIEEADVRHVLLAPVSRQRVLLRPAVQRLRSAMFAAGAAGAVAGQLAGRRLPGSGMSWA 489          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A6L6BQG8_9ACTN (Thiosulfate sulfurtransferase n=10 Tax=root TaxID=1 RepID=A0A6L6BQG8_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 3.820e-41
Identity = 80/144 (55.56%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 LKALRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            ++ LRR RQ+NRLA++EWF+A Y+VY+ A   GGG+L++S  + D+PV+ + AAD+ + GP  LGL  V A+  GLRSG++GGPLA+E ADV HV+LAPV R R LM+P  QR+R+   S +  GA+AGQLAGRRLPG++ AWA
Sbjct:  337 VRELRRTRQKNRLAEVEWFEALYRVYLAAFIFGGGILFLSDLVTDEPVTTTTAADVLKFGPGWLGLAGVLALAMGLRSGSRGGPLAIEEADVRHVLLAPVSRQRVLMRPAVQRLRTVMFSTAGAGAVAGQLAGRRLPGTSMAWA 480          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A7W1R718_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1R718_9ACTN)

HSP 1 Score: 143 bits (360), Expect = 9.300e-41
Identity = 74/141 (52.48%), Postives = 97/141 (68.79%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            LRR RQ  RL D EWFD AY+VY+VA+  G  ++  S  + D  V+++  ADI R+GP  LGL+A  AV  GLRSGA GGP+ALE  DV H++LAP+ R   + +P  QR+RS +A+ ++ G +AG LA RRLPGSA AWA
Sbjct:   30 LRRARQHRRLGDQEWFDVAYRVYLVALAAGAAIIAASDAVNDAVVTSTTVADITRHGPGALGLIAAVAVAAGLRSGANGGPVALEPPDVRHLLLAPISRGVVMRRPVAQRIRSTAAAGALVGVVAGVLAARRLPGSATAWA 170          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A524B606_9ACTN (Thiosulfate sulfurtransferase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B606_9ACTN)

HSP 1 Score: 150 bits (380), Expect = 1.570e-39
Identity = 80/141 (56.74%), Postives = 102/141 (72.34%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            LRR RQR RLA++EWF+A Y+VY+ A   GGG+L++S  +  +P S +  AD+ R GP  LGL AV A+  GLRSG++GGPLALE ADV H +LAP+DR RAL +P  QR+R+   +A+  GA AGQLAGRR PGS  AWA
Sbjct:  317 LRRTRQRRRLAEVEWFEALYRVYLAAFIYGGGMLFVSDLVAGEPASTNFVADVERFGPGWLGLAAVLAITFGLRSGSRGGPLALEEADVRHALLAPIDRARALRRPAVQRLRTIVFAATAIGAFAGQLAGRRFPGSEIAWA 457          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A7W0T6K4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0T6K4_9ACTN)

HSP 1 Score: 142 bits (357), Expect = 5.430e-37
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA 432
            LRR RQ  RL D EWFD AY+VY+VA+  G  ++  S  + D  V+ +  ADI R+GP  LGL+A  AV  GLRSGA GGP+ALE  DV H++LAP+ R   + +P  QR+RS +A+ ++ G +AG LA RRLPGS  AWA
Sbjct:   30 LRRARQHRRLGDQEWFDVAYRVYLVALAAGAAIVAASDAVNDAVVTRATVADITRHGPGALGLIAAVAVAAGLRSGANGGPVALEAPDVRHLLLAPIPRAVVMRRPVAQRIRSTAAAGALVGVVAGVLAARRLPGSTTAWA 170          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A6N2DKR1_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DKR1_9ACTN)

HSP 1 Score: 140 bits (354), Expect = 1.630e-36
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 LKALRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAW 429
            L+ LRR R+  RL D+EWFD AY+VY+ A+FGGG V+ +S  +GD  +S + +A++    P VLGLL V  +  GLRSGA GGP+A+E  DV H++LAPV R R L +P  QR RS   + +V  AIAGQLA +RLPGS A W
Sbjct:    4 LRDLRRARRARRLGDLEWFDIAYRVYLAALFGGGAVIVVSDLVGDAEISTARSAELFEAAPGVLGLLVVAVLALGLRSGADGGPVAVEAGDVRHLLLAPVSRRRVLARPLAQRARSLVFAGAVVAAIAGQLAAQRLPGSPARW 146          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: A0A7X7D5K5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D5K5_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 1.510e-33
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAW 429
            LRR R+R R+A + W DA Y+VYI A+    GV+++S  IGD  VSA   AD+  +GPA LG++A  AV+ GLRSG++GGPLALE ADV HV+LAP+DR  AL  P W+++R  +A  +  GA AG LA +RLP + A W
Sbjct:   15 LRRARRRQRVAAIHWVDALYQVYITALVAVVGVVFVSGLIGDGEVSAETVADVVADGPAALGVVAALAVLVGLRSGSRGGPLALERADVRHVLLAPIDRGVALRGPAWRQLRFMAAVGAALGAAAGLLASQRLPETTAEW 154          
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Match: UPI001C634B0D (hypothetical protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C634B0D)

HSP 1 Score: 131 bits (330), Expect = 4.360e-33
Identity = 68/134 (50.75%), Postives = 93/134 (69.40%), Query Frame = 1
Query:   10 LRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSASAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPVDRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLP 411
            LRR R++ R+A++ W DA Y+VY+ AI G   V+ ++  +GD P+S +   D+ R+GPAV+GL+A  A   GLRSG++GGPLA+E ADV HV+LAPVDR RAL  P W++VRS+   A + GA  G  A RR P
Sbjct:   26 LRRARRQRRVAEIHWVDALYRVYVAAIIGSVAVVAVAGAVGDAPLSRAQVVDVTRDGPAVVGLIATVAFAVGLRSGSRGGPLAVEAADVRHVLLAPVDRGRALRGPAWRQVRSSLLPAVLLGATIGLFADRRFP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EQL6_9ACTN1.110e-4862.50Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A6J7EKD8_9ZZZZ1.020e-4357.86Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I3ENA4_9ACTN1.390e-4358.33Uncharacterized protein n=5 Tax=root TaxID=1 RepID... [more]
A0A6L6BQG8_9ACTN3.820e-4155.56Thiosulfate sulfurtransferase n=10 Tax=root TaxID=... [more]
A0A7W1R718_9ACTN9.300e-4152.48Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A524B606_9ACTN1.570e-3956.74Thiosulfate sulfurtransferase n=1 Tax=Acidimicrobi... [more]
A0A7W0T6K4_9ACTN5.430e-3751.77Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6N2DKR1_9ACTN1.630e-3652.45Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7X7D5K5_9ACTN1.510e-3352.14Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
UPI001C634B0D4.360e-3350.75hypothetical protein n=1 Tax=Iamia sp. SCSIO 61187... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56275contigP-wetherbeei_contig56275:2..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size432
Hectar predicted targeting categorysignal anchor
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.9547734-CDS-P-wetherbeei_contig56275:1..4331683186836.9547734-CDS-P-wetherbeei_contig56275:1..433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56275 2..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56275.1.1prot_P-wetherbeei_contig56275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56275 2..433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56275.1.1

>prot_P-wetherbeei_contig56275.1.1 ID=prot_P-wetherbeei_contig56275.1.1|Name=mRNA_P-wetherbeei_contig56275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
LKALRRKRQRNRLADMEWFDAAYKVYIVAIFGGGGVLWISSGIGDQPVSA
SAAADIARNGPAVLGLLAVFAVMTGLRSGAQGGPLALEGADVVHVMLAPV
DRLRALMKPTWQRVRSASASASVTGAIAGQLAGRRLPGSAAAWA
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mRNA from alignment at P-wetherbeei_contig56275:2..433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56275.1.1 ID=mRNA_P-wetherbeei_contig56275.1.1|Name=mRNA_P-wetherbeei_contig56275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig56275:2..433- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGGCACTGCGGCGCAAGCGCCAGCGCAACCGTCTCGCCGACATGGA GTGGTTCGACGCCGCCTACAAGGTGTACATCGTGGCGATCTTCGGCGGCG GTGGTGTGCTCTGGATCAGCAGCGGCATCGGCGACCAACCGGTCAGCGCC AGCGCGGCAGCCGACATCGCCCGCAACGGGCCGGCGGTCCTCGGCCTGCT CGCGGTGTTCGCGGTGATGACCGGCCTGCGCAGTGGCGCTCAGGGCGGCC CACTCGCGCTCGAGGGCGCCGACGTCGTGCACGTGATGCTCGCCCCGGTC GACCGGTTGCGTGCGCTGATGAAGCCGACGTGGCAGCGGGTGCGCAGCGC CAGCGCCAGCGCATCGGTCACCGGTGCGATCGCCGGCCAACTCGCTGGGC GCCGTCTCCCCGGCAGCGCCGCTGCATGGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56275:2..433-

>mRNA_P-wetherbeei_contig56275.1.1 ID=mRNA_P-wetherbeei_contig56275.1.1|Name=mRNA_P-wetherbeei_contig56275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig56275:2..433- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGGCACTGCGGCGCAAGCGCCAGCGCAACCGTCTCGCCGACATGGA
GTGGTTCGACGCCGCCTACAAGGTGTACATCGTGGCGATCTTCGGCGGCG
GTGGTGTGCTCTGGATCAGCAGCGGCATCGGCGACCAACCGGTCAGCGCC
AGCGCGGCAGCCGACATCGCCCGCAACGGGCCGGCGGTCCTCGGCCTGCT
CGCGGTGTTCGCGGTGATGACCGGCCTGCGCAGTGGCGCTCAGGGCGGCC
CACTCGCGCTCGAGGGCGCCGACGTCGTGCACGTGATGCTCGCCCCGGTC
GACCGGTTGCGTGCGCTGATGAAGCCGACGTGGCAGCGGGTGCGCAGCGC
CAGCGCCAGCGCATCGGTCACCGGTGCGATCGCCGGCCAACTCGCTGGGC
GCCGTCTCCCCGGCAGCGCCGCTGCATGGGCA
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