mRNA_P-wetherbeei_contig56212.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56212.1.1
Unique NamemRNA_P-wetherbeei_contig56212.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7C2XNK8_9CHLR (Response regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2XNK8_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 1.550e-22
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   10 LVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            L+VEDHAA R  +  LL  AFPG  ++ A SAE AL L     P +V+MDI LPGMNGI+ATR +K+  P  RVVM S  +   ++  ++  GASA++ K T   ELVP +  LL
Sbjct:   18 LIVEDHAALRAGLCELLGLAFPGHEILEAGSAEEALNLAFITRPEIVLMDIGLPGMNGIQATRQLKSHLPHTRVVMISIQETDHYQSAALQAGASAYLFKRTLHSELVPTVMKLL 132          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7C2WIR2_9CHLR (Response regulator n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C2WIR2_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 5.580e-21
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            IL+VED+ + R ++   L GAFP  + I A + E A+ + + +AP  VIMDI LPGMNGIE TR IKA  P  +VV+ + ++ + FR+++ + GASA+V K     +L+P LA +L
Sbjct:    6 ILIVEDNNSVRKSLRQWLEGAFPKYQFIEAATGEQAIAITQEQAPCAVIMDIRLPGMNGIETTRHIKATMPTTQVVILTIHEEKAFRNDAASAGASAYVPKRIMRKKLLPALAAVL 121          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7C1M6R8_9GAMM (Response regulator n=2 Tax=root TaxID=1 RepID=A0A7C1M6R8_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 9.760e-21
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            ILVVEDH   R  V   LA  FP CR++ A   E A+ L   E+PRVV+  I+LPGMNGI+  R IKA  P    VM + ++ Q +R E+   GASA+V K     EL+P +A LL
Sbjct:   13 ILVVEDHDTLRKFVREWLALEFPCCRVVAASCGEEAIALTRIESPRVVVTGISLPGMNGIDVVRQIKAILPCAHFVMLTIHEEQAYRAEATLAGASAYVPKRLILTELIPAIAALL 128          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7V5ZKP3_9BACT (Response regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V5ZKP3_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 4.580e-20
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 AAILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            A IL+V+DH A R ++ + L  A P      A + E AL     + P +V+MDI LPGM+GIEATR I A  PG+ VV+ S +D + +R ++ A GA+AFV K     EL+P+L  LL
Sbjct:   19 ATILIVDDHPAVRRSLRSWLVKALPTYEFSEAVNGEEALARLGEQRPALVLMDINLPGMSGIEATRRITATAPGVPVVIVSMHDTEAYRQDAAAAGAAAFVAKERMGFELLPLLQRLL 136          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7C3BB05_9CHLR (Response regulator transcription factor n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7C3BB05_9CHLR)

HSP 1 Score: 88.2 bits (217), Expect = 5.840e-20
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            IL+V+DH A R A+   L    P C+   A SAE AL L +   P VV+MDI LPGMNG+EATR +K   P   VV+ + ++   ++ ++ A GASA+V K     EL+P++A L+
Sbjct:   14 ILIVDDHEAVRAALREWLGTVLPNCQYQEASSAEEALALVQARPPTVVLMDIQLPGMNGVEATRRLKQIAPRTHVVIMTIHENPEYQADARAAGASAYVLKRMLGSELIPIMARLV 129          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7C4QLK5_9CHLR (Response regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4QLK5_9CHLR)

HSP 1 Score: 86.7 bits (213), Expect = 2.400e-19
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            IL+VEDH  TR  V   L   FP  R +   + E AL    ++ P++V+MD+ +PGM GIEATR IK   PG +VV+ S      ++  ++A GASA++ K +   EL+P+L  LL
Sbjct:   20 ILIVEDHVRTREVVRDWLGFVFPQARFVEVGTGEEALAAVAKQPPQLVLMDVEMPGMKGIEATRRIKLLAPGTQVVILSIYQAPEYQSAAIAAGASAYLPKASMHTELIPLLRTLL 135          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: UPI0019F898AF (Response regulator transcription factor n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F898AF)

HSP 1 Score: 86.7 bits (213), Expect = 3.500e-19
Identity = 54/116 (46.55%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            IL+VEDH A R  V   L   F  CR + A S E A+ L   + P +VIMDI LP MNGIE TR IKA  P  +VVM +  D   F  ++ A GASA+V K     +L+P +A LL
Sbjct:   33 ILIVEDHDAVRTHVRDWLNRTFTECRFLEAKSGEEAIALASAQPPDIVIMDIGLPRMNGIETTRHIKAAVPQAQVVMLTIYDAADFMADADAAGASAYVPKSEVGSKLIPEVARLL 148          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A1F9N2M9_9DELT (Response regulatory domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1F9N2M9_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 2.100e-18
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            I++V+DHA  R  +   L   FPG  ++ A++AE  L +     P VV+MD +LPGMNGI+ATR ++A  P ++VVM +  D    R  +   GA+A+V K     +L PVLA LL
Sbjct:    5 IMIVDDHAEMRGVLREWLVARFPGESIVEAETAEQGLAMAVAADPDVVVMDFSLPGMNGIDATRRLRAMSPRVQVVMLTIWDSPSLRAAAAKAGAAAYVTKDRVDQDLAPVLARLL 120          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A7Y8HU24_9BACT (Response regulator transcription factor n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7Y8HU24_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 4.000e-18
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 ILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVL 342
            +L+VEDH A R ++   L+  FP    + A S E AL L +   P +V+MDI LP M+GIEATR IK   P   +V+ S  D   ++ E++A GASA+V K     ELVP++
Sbjct:   11 LLIVEDHDALRESLQKWLSTFFPELDFLEAGSGEDALNLVKEHKPGIVLMDIKLPQMSGIEATRQIKEMLPDTNIVILSMYDFIDYKTEALAAGASAYVAKNRMYSELVPII 122          
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Match: A0A524GGR4_9BACT (Response regulator transcription factor n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A524GGR4_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 7.680e-18
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 AAILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVVIMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAFVGKGTRSGELVPVLAGLL 354
            A IL+VEDH A R ++   L+  F  C L+ A + E AL L     P++V+MDI LP M+GIE TR IK   P  +VVM S  +   ++ ++ A GA A++ K     E+VPV+  LL
Sbjct:   12 ATILIVEDHDALRDSLKTWLSAIFQDCILLQAKTGEEALELSRAHLPQIVLMDIMLPAMSGIETTRHIKGVVPDAQVVMLSIYEDSAYKIDAAAAGAVAYISKRKMGTEIVPVIKKLL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2XNK8_9CHLR1.550e-2247.83Response regulator n=1 Tax=Chloroflexi bacterium T... [more]
A0A7C2WIR2_9CHLR5.580e-2143.97Response regulator n=1 Tax=Dehalococcoidia bacteri... [more]
A0A7C1M6R8_9GAMM9.760e-2146.55Response regulator n=2 Tax=root TaxID=1 RepID=A0A7... [more]
A0A7V5ZKP3_9BACT4.580e-2044.07Response regulator n=1 Tax=Acidobacteria bacterium... [more]
A0A7C3BB05_9CHLR5.840e-2043.10Response regulator transcription factor n=1 Tax=Ca... [more]
A0A7C4QLK5_9CHLR2.400e-1941.38Response regulator n=1 Tax=Chloroflexi bacterium T... [more]
UPI0019F898AF3.500e-1946.55Response regulator transcription factor n=1 Tax=Pr... [more]
A0A1F9N2M9_9DELT2.100e-1841.38Response regulatory domain-containing protein n=2 ... [more]
A0A7Y8HU24_9BACT4.000e-1842.86Response regulator transcription factor n=1 Tax=Ni... [more]
A0A524GGR4_9BACT7.680e-1841.53Response regulator transcription factor n=1 Tax=Ni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56212contigP-wetherbeei_contig56212:17..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123519.PSJM300_09480
PFAMsGerE,Response_reg
Model size357
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-15
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,1RBI9@1224|Proteobacteria,1S5P9@1236|Gammaproteobacteria,1Z4HZ@136846|Pseudomonas stutzeri group
Descriptionhelix_turn_helix, Lux Regulon
Cds size357
COG categoryKT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.4102519-CDS-P-wetherbeei_contig56212:16..3731683186836.4102519-CDS-P-wetherbeei_contig56212:16..373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56212 17..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56212.1.1prot_P-wetherbeei_contig56212.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56212 17..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56212.1.1

>prot_P-wetherbeei_contig56212.1.1 ID=prot_P-wetherbeei_contig56212.1.1|Name=mRNA_P-wetherbeei_contig56212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
AAILVVEDHAATRMAVMALLAGAFPGCRLIGADSAEVALPLCEREAPRVV
IMDIALPGMNGIEATRLIKARHPGIRVVMHSSNDMQIFRDESVAVGASAF
VGKGTRSGELVPVLAGLL*
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mRNA from alignment at P-wetherbeei_contig56212:17..373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56212.1.1 ID=mRNA_P-wetherbeei_contig56212.1.1|Name=mRNA_P-wetherbeei_contig56212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig56212:17..373+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGATCCTTGTCGTCGAGGATCATGCGGCCACGCGCATGGCTGTAAT GGCCTTGTTGGCCGGGGCGTTTCCCGGCTGCCGCCTGATCGGCGCGGACA GCGCCGAAGTCGCGCTGCCGTTGTGCGAGCGGGAAGCGCCGCGCGTGGTG ATCATGGATATCGCGTTGCCGGGCATGAACGGTATCGAGGCAACGCGTCT AATCAAGGCCCGGCATCCCGGTATCCGGGTGGTGATGCATTCGAGCAACG ATATGCAGATCTTCCGCGACGAATCGGTTGCCGTGGGGGCCTCCGCCTTT GTCGGCAAAGGGACCCGCTCTGGAGAATTGGTACCGGTGCTGGCTGGATT GTTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56212:17..373+

>mRNA_P-wetherbeei_contig56212.1.1 ID=mRNA_P-wetherbeei_contig56212.1.1|Name=mRNA_P-wetherbeei_contig56212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig56212:17..373+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGATCCTTGTCGTCGAGGATCATGCGGCCACGCGCATGGCTGTAAT
GGCCTTGTTGGCCGGGGCGTTTCCCGGCTGCCGCCTGATCGGCGCGGACA
GCGCCGAAGTCGCGCTGCCGTTGTGCGAGCGGGAAGCGCCGCGCGTGGTG
ATCATGGATATCGCGTTGCCGGGCATGAACGGTATCGAGGCAACGCGTCT
AATCAAGGCCCGGCATCCCGGTATCCGGGTGGTGATGCATTCGAGCAACG
ATATGCAGATCTTCCGCGACGAATCGGTTGCCGTGGGGGCCTCCGCCTTT
GTCGGCAAAGGGACCCGCTCTGGAGAATTGGTACCGGTGCTGGCTGGATT
GTTGTAG
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