mRNA_P-wetherbeei_contig5618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig5618.1.1
Unique Name	mRNA_P-wetherbeei_contig5618.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: D8LBH5_ECTSI (Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.260e-29
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITISD 201
            G+SFHFA R + E+F  SIKRHEYYL GRL VS+GAKVLDCGCG+GGPYRNIAQFTGAD+TGITI++
Sbjct:  135 GSSFHFASRWRNESFQDSIKRHEYYLGGRLGVSRGAKVLDCGCGIGGPYRNIAQFTGADITGITINE 201

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A7S2UX11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX11_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.730e-27
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITISD 201
            GTSFHFAYR  EE F +SI+RHEYYLAGRL V KG+KVLD GCG+GGP RNI +FTG DVTGITI++
Sbjct:  131 GTSFHFAYRRPEENFHESIRRHEYYLAGRLGVPKGSKVLDVGCGIGGPMRNITRFTGCDVTGITINE 197

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A7S2B694_9STRA (Methyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B694_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.590e-26
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITIS 198
            GTSFHFA R ++ETF QSI RHEYYLAG+L V+KGAK+LDCGCGVGGP RNI +FT ADVT +T++
Sbjct:   17 GTSFHFATRFRDETFRQSILRHEYYLAGKLGVNKGAKILDCGCGVGGPARNIHRFTSADVTALTLN 82

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A836CHN0_9STRA (Methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.600e-26
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITISD 201
            G SFHFAYR   E+F +SI+RHEYYLAG+L +  G KVLD GCG+GGPYRNIAQFTGAD+TGITI++
Sbjct:  143 GASFHFAYRRPYESFGESIRRHEYYLAGKLGLKTGEKVLDVGCGIGGPYRNIAQFTGADITGITINE 209

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A482S211_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S211_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 3.630e-26
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITISD 201
            G SFHF+Y++K E F  +  RHEYYLAGRL+V+ G KVLDCGCG+GGP RNIA+FT A +TG+T+SD
Sbjct:   15 GQSFHFSYQLKNEAFQVATARHEYYLAGRLNVNAGDKVLDCGCGIGGPMRNIARFTNAAITGVTLSD 81

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A7S3H6D9_9STRA (Methyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6D9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.760e-24
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITISD 201
            G  FHFAY++  ETF Q+I RHEYY+AGRL VS G KVLDCGCG+GGP RNIA+FT A +TG+T++D
Sbjct:  139 GQCFHFAYQLPGETFKQAIARHEYYVAGRLGVSSGDKVLDCGCGIGGPMRNIAKFTNAQITGVTLND 205

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A6U6HVZ5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6HVZ5_9DINO)

HSP 1 Score: 102 bits (253), Expect = 2.290e-24
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITIS 198
            G+SFHFA R   ETF QSI RHEYYLAGRL + +GAKVLDCGCG+GGP RNIA+FTGAD+  +TI+
Sbjct:  111 GSSFHFADRRAGETFRQSILRHEYYLAGRLGLRQGAKVLDCGCGIGGPARNIARFTGADIKAVTIN 176

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: F0YC91_AURAN (Methyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC91_AURAN)

HSP 1 Score: 101 bits (251), Expect = 4.340e-24
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITIS 198
            G  FHFA R   ETFAQS+ RHEYYLA RL+VS GAKVLDCGCG+GGP RNIA+FT A VTGITI+
Sbjct:   68 GACFHFADRRGGETFAQSLLRHEYYLASRLAVSAGAKVLDCGCGIGGPMRNIARFTRAQVTGITIN 133

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A7S1SBB5_ALECA (Methyltransferase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SBB5_ALECA)

HSP 1 Score: 102 bits (255), Expect = 5.640e-24
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITIS 198
            G SFHFA R+K E+F QSI RHEYYLAG+L++  GA +LDCGCG+GGP RNIA+FTGA VTG+TI+
Sbjct:  375 GASFHFAERLKGESFQQSILRHEYYLAGKLAIRNGAHILDCGCGIGGPARNIARFTGARVTGVTIN 440

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BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Match: A0A7S3GR97_9STRA (Methyltransferase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR97_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.440e-24
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1

Query:    1 GTSFHFAYRMKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGADVTGITIS 198
            GTSFHFA R K ETF QSI RHEY+LAGRL   KGA +LDCGCG+GGP RNIA+FTGA++  +TI+
Sbjct:   48 GTSFHFADRRKGETFQQSILRHEYFLAGRLGTKKGATLLDCGCGIGGPARNIARFTGANIKAVTIN 113

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBH5_ECTSI	2.260e-29	77.61	Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 Re...	[more]
A0A7S2UX11_9STRA	1.730e-27	74.63	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S2B694_9STRA	2.590e-26	72.73	Methyltransferase n=1 Tax=Florenciella parvula Tax...	[more]
A0A836CHN0_9STRA	2.600e-26	71.64	Methyltransferase n=1 Tax=Tribonema minus TaxID=30...	[more]
A0A482S211_9ARCH	3.630e-26	65.67	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
A0A7S3H6D9_9STRA	1.760e-24	67.16	Methyltransferase (Fragment) n=1 Tax=Spumella elon...	[more]
A0A6U6HVZ5_9DINO	2.290e-24	71.21	Hypothetical protein (Fragment) n=1 Tax=Alexandriu...	[more]
F0YC91_AURAN	4.340e-24	74.24	Methyltransferase n=1 Tax=Aureococcus anophageffer...	[more]
A0A7S1SBB5_ALECA	5.640e-24	69.70	Methyltransferase n=1 Tax=Alexandrium catenella Ta...	[more]
A0A7S3GR97_9STRA	6.440e-24	69.70	Methyltransferase n=2 Tax=Spumella elongata TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5618	contig	P-wetherbeei_contig5618:423..957 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LBH5
Preferred name	SMT1
PFAMs	Methyltransf_11,Sterol_MT_C
Model size	201
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC01154,RC01470
KEGG ko	ko:K00559,ko:K08242
KEGG Reaction	R04427,R05776,R07481
KEGG Pathway	ko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG Module	M00102
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0003838,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006275,GO:0006629,GO:0006694,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008156,GO:0008168,GO:0008169,GO:0008202,GO:0008610,GO:0008757,GO:0009058,GO:0009825,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010051,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0012505,GO:0016049,GO:0016125,GO:0016126,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032259,GO:0032501,GO:0032502,GO:0032875,GO:0032876,GO:0040007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045786,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051726,GO:0060255,GO:0061062,GO:0061065,GO:0065007,GO:0071704,GO:0080090,GO:0090329,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:2000026,GO:2000104,GO:2000112,GO:2000113
Exons	2
Evalue	2.66e-25
EggNOG OGs	COG0500@1\|root,KOG1269@2759\|Eukaryota
Ec32 ortholog description	Sterol methyltransferase
Ec32 ortholog	Ec-27_003950.3
EC	2.1.1.143,2.1.1.41
Description	sterol 24-C-methyltransferase activity
Cds size	174
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186835.7038069-CDS-P-wetherbeei_contig5618:422..563	1683186835.7038069-CDS-P-wetherbeei_contig5618:422..563	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig5618 423..563 -
1683186835.7234378-CDS-P-wetherbeei_contig5618:897..930	1683186835.7234378-CDS-P-wetherbeei_contig5618:897..930	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig5618 898..930 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186835.733601-UTR-P-wetherbeei_contig5618:930..957	1683186835.733601-UTR-P-wetherbeei_contig5618:930..957	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig5618 931..957 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5618.1.1	prot_P-wetherbeei_contig5618.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig5618 423..930 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig5618:423..957-
coding sequence from alignment at P-wetherbeei_contig5618:423..957-

protein sequence of mRNA_P-wetherbeei_contig5618.1.1

>prot_P-wetherbeei_contig5618.1.1 ID=prot_P-wetherbeei_contig5618.1.1|Name=mRNA_P-wetherbeei_contig5618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MKEETFAQSIKRHEYYLAGRLSVSKGAKVLDCGCGVGGPYRNIAQFTGAD
VTGITISD

mRNA from alignment at P-wetherbeei_contig5618:423..957-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig5618.1.1 ID=mRNA_P-wetherbeei_contig5618.1.1|Name=mRNA_P-wetherbeei_contig5618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=535bp|location=Sequence derived from alignment at P-wetherbeei_contig5618:423..957- (Phaeothamnion wetherbeei SAG_119_79)
GGCACCTCGTTTCACTTTGCATACCGGATGAAAGAGGAGACCTTCGCGCA
GAGCATCAAGGTAAACGACGAAAGAAATCCTTTTCTTGTGTGCAGCCTTT
TCTGTCCATCAAATTCGTGTGTGCAGGAATGTTTTGTATTGGAACGGCTT
GCGAGAGGATGGCGTTCGGGTTGTCGTCGGGAACCCACTGCGCTCTGATC
TGTTTTGTGTCGCGGCCTGCACGGCTGTCATCTTCTTCAAGCAATTGCGT
CTTCCACCGCCGAAGTGCGTTTAGTTTGGATGTTCTCCCTTTTGCTCGTT
GCGTTGTTGCACCGTTGACGCCACTTGCCTGCGTTTCCTGTGTTCCCTGG
GATTCTTTTCCTGGAATTCTTCGCGTAACTTTGCTATCCTCCAGCGGCAC
GAGTACTACTTGGCGGGGCGGCTCAGCGTGAGCAAGGGGGCGAAGGTGCT
CGATTGCGGCTGCGGCGTTGGCGGCCCGTACCGCAATATCGCGCAGTTCA
CGGGCGCTGACGTCACCGGCATCACCATCAGCGAT

Coding sequence (CDS) from alignment at P-wetherbeei_contig5618:423..957-

>mRNA_P-wetherbeei_contig5618.1.1 ID=mRNA_P-wetherbeei_contig5618.1.1|Name=mRNA_P-wetherbeei_contig5618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig5618:423..957- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGAGGAGACCTTCGCGCAGAGCATCAAGCGGCACGAGTACTACTT
GGCGGGGCGGCTCAGCGTGAGCAAGGGGGCGAAGGTGCTCGATTGCGGCT
GCGGCGTTGGCGGCCCGTACCGCAATATCGCGCAGTTCACGGGCGCTGAC
GTCACCGGCATCACCATCAGCGAT