mRNA_P-wetherbeei_contig56119.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56119.1.1
Unique NamemRNA_P-wetherbeei_contig56119.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A521L1G6_9HYPH (DNA polymerase Y family protein (Fragment) n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L1G6_9HYPH)

HSP 1 Score: 283 bits (724), Expect = 6.990e-95
Identity = 141/173 (81.50%), Postives = 152/173 (87.86%), Query Frame = 1
Query:    1 TDRLARASKKEWSAQDWRVRAAATVVWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            TDRLAR++KK+WS +      AATVVW DGCPRLA +N HARTAGLRPHMRLADARALLPDL+T  GEPQAD+RL+E +A WCDRYTPWVAIDPLGGALAEE AE CSAGGFGGDAGLLLDVTGC HLF  GEAGERALLADLVARLARHD +CR AMADTAGAAWALAR+AE
Sbjct:   46 TDRLARSTKKDWSDKS-----AATVVWHDGCPRLAAVNPHARTAGLRPHMRLADARALLPDLVTTAGEPQADRRLVETVASWCDRYTPWVAIDPLGGALAEEGAETCSAGGFGGDAGLLLDVTGCTHLFGDGEAGERALLADLVARLARHDLSCRVAMADTAGAAWALARFAE 213          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A521QHZ0_9HYPH (DNA polymerase Y family protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521QHZ0_9HYPH)

HSP 1 Score: 271 bits (693), Expect = 7.580e-86
Identity = 135/176 (76.70%), Postives = 150/176 (85.23%), Query Frame = 1
Query:    4 DRLARASKKEW----SAQDWRVRAAATVVWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            DRLAR S+       + +DW  ++AATVVW++GCPRLA +N HAR AGLRPHMRLADARALLPDL+T  GEPQAD+RLIE IA+WCDRYTPWVAIDPLG A+AEE  E CSAGGFGGDAGLLLDVTGC HLF  GEAGERALLADL  RL+RHDF+CRAAMADTAGAAWALAR+AE
Sbjct:   15 DRLARISQNSTGQNPTPRDWSAKSAATVVWQEGCPRLAAVNGHARAAGLRPHMRLADARALLPDLVTTAGEPQADRRLIETIANWCDRYTPWVAIDPLGSAIAEEGTETCSAGGFGGDAGLLLDVTGCTHLFGTGEAGERALLADLTQRLSRHDFSCRAAMADTAGAAWALARFAE 190          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A259MLM3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MLM3_9PROT)

HSP 1 Score: 271 bits (692), Expect = 8.970e-86
Identity = 139/175 (79.43%), Postives = 152/175 (86.86%), Query Frame = 1
Query:    1 TDRLARASKKEWSAQDWRVRAAATVVWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGE--AGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            TDRLARASKK+WS      RAAATVVWR+GCPRLA +N HAR AGLRPHMRLADARALLPDL+T  GEPQAD RL+EAIA WCDRYTPWVAIDP+GGA+A++ A ACS GGFGGDAGLLLDVTGC HLF +GE  +GERALLADLV RLAR D +CRAAMADTAGAAWALAR+AE
Sbjct:   14 TDRLARASKKDWSD-----RAAATVVWREGCPRLAAVNPHARAAGLRPHMRLADARALLPDLVTVAGEPQADLRLVEAIAAWCDRYTPWVAIDPMGGAVADDIARACSTGGFGGDAGLLLDVTGCTHLFGEGEGESGERALLADLVTRLARRDLSCRAAMADTAGAAWALARFAE 183          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A1T4RMK9_9HYPH (Protein ImuB n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4RMK9_9HYPH)

HSP 1 Score: 270 bits (689), Expect = 3.320e-85
Identity = 138/181 (76.24%), Postives = 155/181 (85.64%), Query Frame = 1
Query:    1 TDRLAR----ASKKEWSAQDWRVRAAATVVWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAE----ACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            TDRLAR    ++ +  +A+DW  RAAATV+W DGCPRLA +NAHAR AGLRPH+RLADARAL+PDL+T   EP+AD+RL+EA+A WCDRYTPWVAIDPLG ALAE  AE    ACSAGGFGGDAGLLLDVTGC HLF +GEAGERALLADLV RLARHDFTCRAA+ADTAGAAWALARYA+
Sbjct:   14 TDRLARPRPDSAGEVQAAKDWSARAAATVLWLDGCPRLAAVNAHARAAGLRPHLRLADARALVPDLVTTGAEPEADRRLLEALAGWCDRYTPWVAIDPLGAALAEPDAEGRLEACSAGGFGGDAGLLLDVTGCGHLFGEGEAGERALLADLVERLARHDFTCRAALADTAGAAWALARYAD 194          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A6A7M7D4_9PROT (DNA polymerase Y family protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6A7M7D4_9PROT)

HSP 1 Score: 270 bits (691), Expect = 5.840e-85
Identity = 145/202 (71.78%), Postives = 156/202 (77.23%), Query Frame = 1
Query:    1 TDRLARA----SKKEWSA------------------------QDWR-VRAAATVVWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            TDRLARA    S ++WSA                        Q+ R  RAAATVVW +GCPRL  +N HARTAGLRPHMRLADARAL+PDL+T PGEPQAD RLIE +A+WCDRYTPWVAIDPLGGA+AEE  EACSAG FGGDAGLLLDVTGCAHLF QGEAGERALLADL  RLARHD TCRAAMADTAGAAWALAR+AE
Sbjct:   46 TDRLARATPAPSNRDWSASHPTLRGSFGWPKSGAEYRPPGAPQERRGARAAATVVWLEGCPRLIAVNPHARTAGLRPHMRLADARALVPDLVTTPGEPQADHRLIETLANWCDRYTPWVAIDPLGGAIAEEGTEACSAGSFGGDAGLLLDVTGCAHLFGQGEAGERALLADLTERLARHDLTCRAAMADTAGAAWALARFAE 247          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A6N7A1N1_9PROT (Uncharacterized protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N7A1N1_9PROT)

HSP 1 Score: 243 bits (619), Expect = 3.120e-75
Identity = 118/148 (79.73%), Postives = 129/148 (87.16%), Query Frame = 1
Query:   76 VWRDGCPRLAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            +W DGCPRLA +N HAR AGLRP MRLADARALLPD++T  GEPQAD RLIEAIA WCDRYTPWVA+D +GGALA++   ACS GGFGGDAGLLLDVTGC HLF +GEAGERALLADLV RLAR D +CRAAMADTAGAAWALAR+AE
Sbjct:    1 MWHDGCPRLAAVNPHARAAGLRPRMRLADARALLPDIVTVAGEPQADLRLIEAIAGWCDRYTPWVAVDAMGGALADDIERACSTGGFGGDAGLLLDVTGCTHLFGEGEAGERALLADLVTRLARRDLSCRAAMADTAGAAWALARFAE 148          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A1H8W7D3_9PROT (Protein ImuB n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8W7D3_9PROT)

HSP 1 Score: 223 bits (568), Expect = 7.020e-68
Identity = 111/124 (89.52%), Postives = 115/124 (92.74%), Query Frame = 1
Query:  148 MRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            MRLADARALLPDL+T PGEPQADQRLIE IA+WCDRYTPWVAIDPLGGALAEE  EACS GGFGGDAGLLLDV+GCAHLF QGEAGERALLADL  RLARHD TCRAAMADTAGAAWALAR+AE
Sbjct:    1 MRLADARALLPDLVTTPGEPQADQRLIETIANWCDRYTPWVAIDPLGGALAEEGIEACSTGGFGGDAGLLLDVSGCAHLFGQGEAGERALLADLTQRLARHDLTCRAAMADTAGAAWALARFAE 124          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A537MX24_9PROT (DNA polymerase Y family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MX24_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.250e-64
Identity = 102/129 (79.07%), Postives = 114/129 (88.37%), Query Frame = 1
Query:  133 GLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYAE 519
            GLRP+MRLAD+RAL+PDL+T+  EPQAD+RLIE +A WCDRYTPWVAIDPLG A+A+E  E+CSAGGFGGDAGLLLDVTGC HLF  GEAGER LLADL  RL+R DF CRAAMADTAGAAWALAR+AE
Sbjct:    2 GLRPYMRLADSRALMPDLVTSAQEPQADRRLIETLASWCDRYTPWVAIDPLGDAVAQEGIESCSAGGFGGDAGLLLDVTGCGHLFGPGEAGERTLLADLTERLSRRDFACRAAMADTAGAAWALARFAE 130          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: A0A2E6GQI1_9PROT (UmuC domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GQI1_9PROT)

HSP 1 Score: 129 bits (323), Expect = 7.320e-32
Identity = 71/139 (51.08%), Postives = 93/139 (66.91%), Query Frame = 1
Query:  100 LAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARYA 516
            L+ LN  A  AGL+PHM LADARA+LP L   P EP AD +++E +A WC RY+PWV++    G++ +E+    S  G GG AG+ LD TGCAHLF      E+A+LAD+  R+ +  FT R AMADT G AWA+AR+A
Sbjct:   41 LSALNDAAEHAGLKPHMALADARAILPSLTVHPAEPTADGKMLERLAQWCGRYSPWVSM----GSIEKENDPTLSLEGAGG-AGIWLDATGCAHLFGD----EKAMLADMATRIEKLGFTARIAMADTLGCAWAVARFA 170          
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Match: UPI0018731A5A (DNA polymerase Y family protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018731A5A)

HSP 1 Score: 128 bits (322), Expect = 8.300e-32
Identity = 75/138 (54.35%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  100 LAGLNAHARTAGLRPHMRLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALAEESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARHDFTCRAAMADTAGAAWALARY 513
            LA +NA A  AGL P + LA+ARALLP LIT P +P  D R + A+A WC RYTPW A D         S E     G GG AG+LLDV+GC HLF     GE ALL DL ARLA   ++ RAA+ADT GAAWA+AR+
Sbjct:   11 LAAVNAEAEAAGLEPGLPLAEARALLPGLITVPHDPAVDARALAALAAWCARYTPWSAPD---------STEEGEGKGPGGAAGVLLDVSGCGHLF----GGEHALLEDLQARLAGFGYSARAALADTIGAAWAMARF 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56119.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521L1G6_9HYPH6.990e-9581.50DNA polymerase Y family protein (Fragment) n=1 Tax... [more]
A0A521QHZ0_9HYPH7.580e-8676.70DNA polymerase Y family protein n=3 Tax=Alphaprote... [more]
A0A259MLM3_9PROT8.970e-8679.43Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A1T4RMK9_9HYPH3.320e-8576.24Protein ImuB n=1 Tax=Enhydrobacter aerosaccus TaxI... [more]
A0A6A7M7D4_9PROT5.840e-8571.78DNA polymerase Y family protein n=2 Tax=Alphaprote... [more]
A0A6N7A1N1_9PROT3.120e-7579.73Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
A0A1H8W7D3_9PROT7.020e-6889.52Protein ImuB n=1 Tax=Rhodospirillales bacterium UR... [more]
A0A537MX24_9PROT1.250e-6479.07DNA polymerase Y family protein (Fragment) n=1 Tax... [more]
A0A2E6GQI1_9PROT7.320e-3251.08UmuC domain-containing protein n=1 Tax=Rhodospiril... [more]
UPI0018731A5A8.300e-3254.35DNA polymerase Y family protein n=1 Tax=Pelagibius... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56119contigP-wetherbeei_contig56119:2..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000002_gene2964
PFAMsIMS
Model size519
Max annot lvl204441|Rhodospirillales
KEGG koko:K14161
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.15e-65
EggNOG OGsCOG0389@1|root,COG0389@2|Bacteria,1MU5X@1224|Proteobacteria,2TQVR@28211|Alphaproteobacteria,2JR90@204441|Rhodospirillales
DescriptionNucleotidyltransferase DNA polymerase involved in DNA repair
Cds size519
COG categoryL
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.320138-CDS-P-wetherbeei_contig56119:1..5201683186835.320138-CDS-P-wetherbeei_contig56119:1..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56119 2..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56119.1.1prot_P-wetherbeei_contig56119.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56119 2..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56119.1.1

>prot_P-wetherbeei_contig56119.1.1 ID=prot_P-wetherbeei_contig56119.1.1|Name=mRNA_P-wetherbeei_contig56119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
TDRLARASKKEWSAQDWRVRAAATVVWRDGCPRLAGLNAHARTAGLRPHM
RLADARALLPDLITAPGEPQADQRLIEAIADWCDRYTPWVAIDPLGGALA
EESAEACSAGGFGGDAGLLLDVTGCAHLFAQGEAGERALLADLVARLARH
DFTCRAAMADTAGAAWALARYAE
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mRNA from alignment at P-wetherbeei_contig56119:2..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56119.1.1 ID=mRNA_P-wetherbeei_contig56119.1.1|Name=mRNA_P-wetherbeei_contig56119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56119:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGATCGATTGGCGCGCGCTTCGAAGAAAGAATGGTCGGCCCAAGATTG GCGAGTTAGGGCCGCCGCCACCGTCGTCTGGCGCGACGGCTGTCCGCGCC TCGCCGGGCTCAACGCCCATGCCCGCACCGCGGGCCTGCGGCCCCACATG CGGCTGGCCGATGCCCGCGCGCTACTGCCCGACCTGATCACCGCCCCGGG CGAGCCGCAGGCCGACCAGCGCCTGATCGAGGCGATCGCCGACTGGTGCG ACCGCTACACGCCCTGGGTGGCGATCGATCCGCTGGGCGGCGCGCTCGCC GAGGAAAGTGCAGAAGCTTGTAGCGCCGGTGGCTTCGGCGGCGATGCCGG CCTGCTGCTCGATGTCACCGGCTGCGCCCATCTCTTCGCTCAAGGTGAAG CGGGCGAGCGCGCGCTGCTGGCCGACCTGGTCGCGCGTCTGGCGCGCCAC GACTTCACCTGCCGCGCCGCGATGGCCGACACCGCGGGCGCCGCCTGGGC GCTGGCGCGCTACGCCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56119:2..520+

>mRNA_P-wetherbeei_contig56119.1.1 ID=mRNA_P-wetherbeei_contig56119.1.1|Name=mRNA_P-wetherbeei_contig56119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56119:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGATCGATTGGCGCGCGCTTCGAAGAAAGAATGGTCGGCCCAAGATTG
GCGAGTTAGGGCCGCCGCCACCGTCGTCTGGCGCGACGGCTGTCCGCGCC
TCGCCGGGCTCAACGCCCATGCCCGCACCGCGGGCCTGCGGCCCCACATG
CGGCTGGCCGATGCCCGCGCGCTACTGCCCGACCTGATCACCGCCCCGGG
CGAGCCGCAGGCCGACCAGCGCCTGATCGAGGCGATCGCCGACTGGTGCG
ACCGCTACACGCCCTGGGTGGCGATCGATCCGCTGGGCGGCGCGCTCGCC
GAGGAAAGTGCAGAAGCTTGTAGCGCCGGTGGCTTCGGCGGCGATGCCGG
CCTGCTGCTCGATGTCACCGGCTGCGCCCATCTCTTCGCTCAAGGTGAAG
CGGGCGAGCGCGCGCTGCTGGCCGACCTGGTCGCGCGTCTGGCGCGCCAC
GACTTCACCTGCCGCGCCGCGATGGCCGACACCGCGGGCGCCGCCTGGGC
GCTGGCGCGCTACGCCGAA
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