mRNA_P-wetherbeei_contig56114.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56114.1.1
Unique NamemRNA_P-wetherbeei_contig56114.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: UPI001C3D6CCC (lyase family protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D6CCC)

HSP 1 Score: 275 bits (704), Expect = 3.640e-88
Identity = 138/173 (79.77%), Postives = 151/173 (87.28%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            LD I    FPWR +LGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRL+A  G LDLHDA+LDLA+ALV LA+RHA DLAADYTYLQPAQP+++GHLLL +A PALRDAGR+R  HAWLD SVAGVGGSAGSRWP+DR RLA LLGC+GVM HAKDA  +ADGY EL
Sbjct:   71 LDGIPGGAFPWRPELGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLAAREGALDLHDASLDLAAALVGLAERHAADLAADYTYLQPAQPTTVGHLLLAHAYPALRDAGRLRGAHAWLDRSVAGVGGSAGSRWPIDRERLADLLGCAGVMRHAKDAMWQADGYVEL 243          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: UPI001C3DF9E3 (lyase family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3DF9E3)

HSP 1 Score: 268 bits (685), Expect = 2.750e-85
Identity = 136/173 (78.61%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            LDAI P  FPW  +LGDAFNSREH+LKARVGA+AAGWLSAGRPRREAFRVALRL+A AG LDL DA LDLA+ALV LADRH DDLAADYTYLQPAQP++IGHLLL YA PALRDAGR+  VH WLD SVAGVGGSAGSRWPLDR RLA+LLG + +M HAKDA  + DGY EL
Sbjct:   72 LDAIDPAAFPWDPELGDAFNSREHQLKARVGAAAAGWLSAGRPRREAFRVALRLAARAGALDLRDAELDLAAALVGLADRHRDDLAADYTYLQPAQPTTIGHLLLAYAYPALRDAGRLAHVHGWLDASVAGVGGSAGSRWPLDRDRLAELLGHASLMTHAKDAMWQWDGYVEL 244          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A7V9CU52_9ACTN (Argininosuccinate lyase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9CU52_9ACTN)

HSP 1 Score: 214 bits (546), Expect = 1.820e-66
Identity = 115/173 (66.47%), Postives = 128/173 (73.99%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            L AI   +FPW   LGDAFN+RE EL+ RVG SAAGWLSAGRPRREAFRV LRL+A AG  +LHDA    A+AL   A      LA DYTYLQPAQP+++GHLLL YA PALRDA R R+ HA L  SVAG GGSAGSRW LDR RLAQLLGC G++ HAKDA  +AD Y EL
Sbjct:   72 LHAIPGDEFPWDLALGDAFNAREAELERRVGRSAAGWLSAGRPRREAFRVGLRLTARAGARELHDALAGQAAALARHARATRSALATDYTYLQPAQPTTVGHLLLAYAYPALRDAERARSSHAALGASVAGAGGSAGSRWSLDRTRLAQLLGCDGLVEHAKDAAWQADVYLEL 244          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A537ZNS9_9ACTN (Argininosuccinate lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZNS9_9ACTN)

HSP 1 Score: 214 bits (545), Expect = 2.080e-63
Identity = 115/173 (66.47%), Postives = 128/173 (73.99%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            L AI   +FPW   LGDAFN+RE EL  RVG SAAGWLSAGRPRREAFRV LRL+A + V DLHDA +D A+AL   A      LAADYTYLQPAQP+++GHLLL YA PALRDA R R  HA L  SVAG GGSAGSRW LDR RLA+LLGC G++ H KDA  +AD Y EL
Sbjct:  180 LHAIPGDEFPWDPSLGDAFNAREAELGRRVGRSAAGWLSAGRPRREAFRVGLRLTARSAVRDLHDALVDQAAALARHARVTRAALAADYTYLQPAQPTTVGHLLLAYAYPALRDAERARGSHAALGASVAGAGGSAGSRWALDRGRLAELLGCDGLVEHTKDAAWQADVYLEL 352          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A7W0P4S5_9ACTN (Argininosuccinate lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0P4S5_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 1.500e-61
Identity = 109/173 (63.01%), Postives = 125/173 (72.25%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            L  I   +FPW   LGDAFN+RE EL+ RVG +AAGWLSAGRPRREAFRV LRL+A     +LHDA  D A+A+   A    D LA DYTYLQPAQP+++GHLLLTYA PALRDA R+R  +  L  SVAG GGSAGSRW LDR RLA LLGC  ++ HAKDA  +AD Y EL
Sbjct:   72 LHGIPGDEFPWDPSLGDAFNAREAELEGRVGNAAAGWLSAGRPRREAFRVGLRLTARTAARELHDALTDQAAAVARHARATRDALATDYTYLQPAQPTTVGHLLLTYAYPALRDADRVRTSYTALGASVAGAGGSAGSRWALDRTRLADLLGCDRMIEHAKDAAWQADVYVEL 244          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A2G4H5Y5_9ACTN (Argininosuccinate lyase n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=A0A2G4H5Y5_9ACTN)

HSP 1 Score: 199 bits (507), Expect = 7.140e-58
Identity = 109/173 (63.01%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            LDAIAP +FPW   +GDAF +RE EL ARVG+SAAGWLSAGRPRRE FRVALRL  A G+     A  D+++AL   A   A  LAADYTYLQPAQP+++GHLLLT+A P LR A R R V    D SVAGVGGSAGSRWP++R RLA LLG + V VHAKDA  ++D Y E+
Sbjct:  177 LDAIAPHEFPWDPAVGDAFQNREKELTARVGSSAAGWLSAGRPRREPFRVALRLVTAEGLARSAAAFSDMSAALATQAKPLAGSLAADYTYLQPAQPTTVGHLLLTWAYPVLRSAERYRRVQGDFDGSVAGVGGSAGSRWPINRERLADLLGHARVEVHAKDAMWQSDPYLEV 349          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A7V9J0Z5_9ACTN (Argininosuccinate lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9J0Z5_9ACTN)

HSP 1 Score: 164 bits (416), Expect = 1.750e-45
Identity = 86/173 (49.71%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    1 LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            L AI   DF +    GDA+NSRE  L+ R+G SA GWL+AGRPRREA R+A R++    +L L +     A+AL+E+A+RH   + ADYTYLQ AQP++ GH LL++  PALRD  R++    W++ S  G GG AGSR+PLDR+RLA+ LG  GV+ H +DA  + DG   L
Sbjct:   52 LCAIDAADFDFDVRYGDAYNSRERYLEERIGHSA-GWLAAGRPRREAGRIAFRIALRGRILSLTEGVARFAAALIEVAERHNGTIMADYTYLQVAQPATFGHYLLSFVYPALRDGARLQESFVWVNRSPGGAGGVAGSRFPLDRSRLAERLGFDGVIEHTRDAMWQTDGLVSL 223          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A7W1N773_9ACTN (Argininosuccinate lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1N773_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 2.010e-42
Identity = 83/133 (62.41%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  121 GRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            GRPRREAFRV LRL+A +G  +LHDA     +AL   A   +  LAADYTYLQPAQP+++GHLLL YA PALRDA R R+ +  L  SVAG GGSAGSRW LDR RLA+LLGC G++ HAKDA  + D Y EL
Sbjct:    1 GRPRREAFRVGLRLTARSGARELHDALAAQVAALARHARATSAALAADYTYLQPAQPTTVGHLLLAYAYPALRDAARARSSYDALGSSVAGAGGSAGSRWALDRDRLAELLGCDGLVEHAKDAAWQTDVYLEL 133          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: UPI001F34F57B (pyridoxal-phosphate dependent enzyme n=1 Tax=Mycobacterium sp. SM1 TaxID=2816243 RepID=UPI001F34F57B)

HSP 1 Score: 153 bits (386), Expect = 7.150e-40
Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 1
Query:    1 LDAIA-PVD-FPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRVALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEE 516
            LD +A PV+ FP+    GDA+NSREHEL+ R+G S AGWL  GR RREA R+A R++    +LDLH+       A++E A RHAD + AD TYLQPAQPS+ GH L  + E A R   R+  V+ W D S AGVGG  GSR P+DRA LA LLG +    H +D     DG  +
Sbjct:  417 LDVLATPVEEFPYNPVYGDAYNSREHELERRLG-SVAGWLHTGRTRREAGRIAFRIALRDLLLDLHEQVCRFIDAVIEQARRHADTVWADTTYLQPAQPSTFGHYLGAFGEEAARHLDRLEHVYQWADRSPAGVGGVGGSRVPIDRAALADLLGFAAPGAHTRDIMWAVDGLTD 589          
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Match: A0A7W1AB20_9ACTN (Argininosuccinate lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1AB20_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 5.410e-39
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  160 LSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSIGHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQLLGCSGVMVHAKDARGEADGYEEL 519
            L+A AG  +LHDA  D  +ALV  A      LA DYTYLQPAQP+++GHLLL YA PALRD  R RA HA L  SVAG GGSAGSRW LDRARLA+LLGC G++ HAKDA  +AD Y EL
Sbjct:    1 LTARAGARELHDALFDQTAALVRHAGTTRTALATDYTYLQPAQPTTVGHLLLAYAYPALRDGDRARASHAALGASVAGAGGSAGSRWSLDRARLAELLGCDGIVEHAKDAAWQADVYLEL 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D6CCC3.640e-8879.77lyase family protein n=1 Tax=Miltoncostaea marina ... [more]
UPI001C3DF9E32.750e-8578.61lyase family protein n=1 Tax=Miltoncostaea oceani ... [more]
A0A7V9CU52_9ACTN1.820e-6666.47Argininosuccinate lyase (Fragment) n=1 Tax=Actinom... [more]
A0A537ZNS9_9ACTN2.080e-6366.47Argininosuccinate lyase n=1 Tax=Actinomycetia bact... [more]
A0A7W0P4S5_9ACTN1.500e-6163.01Argininosuccinate lyase n=1 Tax=Actinomycetia bact... [more]
A0A2G4H5Y5_9ACTN7.140e-5863.01Argininosuccinate lyase n=1 Tax=Thermoleophilia ba... [more]
A0A7V9J0Z5_9ACTN1.750e-4549.71Argininosuccinate lyase n=1 Tax=Actinomycetia bact... [more]
A0A7W1N773_9ACTN2.010e-4262.41Argininosuccinate lyase n=1 Tax=Actinomycetia bact... [more]
UPI001F34F57B7.150e-4050.00pyridoxal-phosphate dependent enzyme n=1 Tax=Mycob... [more]
A0A7W1AB20_9ACTN5.410e-3964.17Argininosuccinate lyase n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56114contigP-wetherbeei_contig56114:1..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog710685.MycrhN_2907
PFAMsASL_C2,Lyase_1
Model size519
Max annot lvl201174|Actinobacteria
KEGG rclassRC00445,RC00447
KEGG koko:K01755
KEGG ReactionR01086
KEGG Pathwayko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230
KEGG ModuleM00029,M00844,M00845
Hectar predicted targeting categoryother localisation
Exons1
Evalue2e-38
EggNOG OGsCOG0165@1|root,COG0165@2|Bacteria,2I9W9@201174|Actinobacteria,23CB7@1762|Mycobacteriaceae
Ec32 ortholog descriptionargininosuccinate lyase
Ec32 orthologEc-12_005890.1
EC4.3.2.1
DescriptionArgininosuccinate lyase C-terminal
Cds size519
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.2880216-CDS-P-wetherbeei_contig56114:0..5191683186835.2880216-CDS-P-wetherbeei_contig56114:0..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56114 1..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56114.1.1prot_P-wetherbeei_contig56114.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56114 1..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56114.1.1

>prot_P-wetherbeei_contig56114.1.1 ID=prot_P-wetherbeei_contig56114.1.1|Name=mRNA_P-wetherbeei_contig56114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
LDAIAPVDFPWRADLGDAFNSREHELKARVGASAAGWLSAGRPRREAFRV
ALRLSAAAGVLDLHDATLDLASALVELADRHADDLAADYTYLQPAQPSSI
GHLLLTYAEPALRDAGRMRAVHAWLDLSVAGVGGSAGSRWPLDRARLAQL
LGCSGVMVHAKDARGEADGYEEL
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mRNA from alignment at P-wetherbeei_contig56114:1..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56114.1.1 ID=mRNA_P-wetherbeei_contig56114.1.1|Name=mRNA_P-wetherbeei_contig56114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56114:1..519- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGCCATCGCCCCGGTGGACTTCCCGTGGCGCGCCGACCTCGGCGA CGCCTTCAACTCCCGCGAACACGAGCTGAAGGCCCGGGTGGGCGCCTCGG CGGCGGGATGGCTCAGCGCCGGACGGCCGCGACGCGAGGCCTTCCGGGTG GCGCTGCGCCTGTCGGCGGCGGCTGGTGTGCTTGATCTCCACGACGCGAC GCTCGACCTGGCCAGCGCGCTGGTGGAGCTGGCCGATCGTCATGCGGACG ATCTCGCCGCCGACTACACCTACCTTCAGCCCGCGCAGCCGAGCTCGATC GGCCATCTCCTGCTGACCTACGCCGAGCCGGCGCTGCGCGATGCCGGGCG CATGCGGGCCGTGCACGCGTGGCTCGACCTGAGCGTGGCCGGCGTGGGCG GCAGCGCCGGGTCGCGGTGGCCGCTCGACCGGGCGCGCCTGGCGCAGCTG CTCGGGTGCTCAGGGGTGATGGTGCACGCCAAGGACGCGAGGGGGGAGGC CGACGGATACGAGGAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56114:1..519-

>mRNA_P-wetherbeei_contig56114.1.1 ID=mRNA_P-wetherbeei_contig56114.1.1|Name=mRNA_P-wetherbeei_contig56114.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56114:1..519- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGCCATCGCCCCGGTGGACTTCCCGTGGCGCGCCGACCTCGGCGA
CGCCTTCAACTCCCGCGAACACGAGCTGAAGGCCCGGGTGGGCGCCTCGG
CGGCGGGATGGCTCAGCGCCGGACGGCCGCGACGCGAGGCCTTCCGGGTG
GCGCTGCGCCTGTCGGCGGCGGCTGGTGTGCTTGATCTCCACGACGCGAC
GCTCGACCTGGCCAGCGCGCTGGTGGAGCTGGCCGATCGTCATGCGGACG
ATCTCGCCGCCGACTACACCTACCTTCAGCCCGCGCAGCCGAGCTCGATC
GGCCATCTCCTGCTGACCTACGCCGAGCCGGCGCTGCGCGATGCCGGGCG
CATGCGGGCCGTGCACGCGTGGCTCGACCTGAGCGTGGCCGGCGTGGGCG
GCAGCGCCGGGTCGCGGTGGCCGCTCGACCGGGCGCGCCTGGCGCAGCTG
CTCGGGTGCTCAGGGGTGATGGTGCACGCCAAGGACGCGAGGGGGGAGGC
CGACGGATACGAGGAGCTG
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