mRNA_P-wetherbeei_contig561.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig561.4.1
Unique NamemRNA_P-wetherbeei_contig561.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A836C6N5_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6N5_9STRA)

HSP 1 Score: 286 bits (733), Expect = 2.920e-97
Identity = 136/157 (86.62%), Postives = 146/157 (92.99%), Query Frame = 1
Query:   16 SAKFAHPPAIFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKDK 486
            S   AHP AIFTVD+ IAKILPHRYPFALVDKVI+FE GKR +GIKCITNNEPQFTGHFPDRPIMPGV+QVEAMAQLGG++ LQ PISDG GTFFFGGVDGVKWRKPVVPGDVLVME+ELTAWK+RFGIAKM G+GYVDGKLAVEVKEFTFALV+DK
Sbjct:   12 SKGIAHPEAIFTVDEHIAKILPHRYPFALVDKVIYFEPGKRAVGIKCITNNEPQFTGHFPDRPIMPGVLQVEAMAQLGGIIALQAPISDGKGTFFFGGVDGVKWRKPVVPGDVLVMEVELTAWKQRFGIAKMAGRGYVDGKLAVEVKEFTFALVQDK 168          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: D7FWP0_ECTSI (Beta-hydroxyacyl-ACP dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP0_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 7.250e-89
Identity = 126/160 (78.75%), Postives = 138/160 (86.25%), Query Frame = 1
Query:    1 SAGELSAKFAHPPAIFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVK 480
            +A ++S   AHP AIFTV + I K+LPHRYPFALVDKV+HF  GK +IGIKCITNNEPQFTGHFPD PIMPGV+QVEAMAQLGGL+CLQ P SDG GTFFF GVDGVKWRKPVVPGDVLVMEMEL  WK RFG+AKMTGK YVDG LA++VKEFTFAL K
Sbjct:   71 TASDISKGIAHPEAIFTVPENILKVLPHRYPFALVDKVLHFVPGKSIIGIKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGVKWRKPVVPGDVLVMEMELVKWKPRFGLAKMTGKAYVDGVLALDVKEFTFALAK 230          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A7S2DJT4_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S2DJT4_9DINO)

HSP 1 Score: 238 bits (606), Expect = 1.230e-77
Identity = 109/143 (76.22%), Postives = 128/143 (89.51%), Query Frame = 1
Query:   55 DDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKD 483
            ++ +AKILPHRYPF LVDKV+ FEAGKR++G+K +T NEPQFTGHFPDRPIMPGV+ VEAMAQLGGLVCLQ P+SDG G FFF G+DG+K+RKPVVPGD LVMEMEL+ ++E++GIAKM GK YVDGK+AVEVK FTFALVKD
Sbjct:   43 NEGVAKILPHRYPFLLVDKVVEFEAGKRIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQQPVSDGKGEFFFAGIDGIKFRKPVVPGDTLVMEMELSKFREKYGIAKMKGKAYVDGKVAVEVKAFTFALVKD 185          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A0G4H2S5_VITBC (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H2S5_VITBC)

HSP 1 Score: 234 bits (597), Expect = 1.010e-75
Identity = 111/160 (69.38%), Postives = 131/160 (81.88%), Query Frame = 1
Query:    1 SAGELSAKFAHPPAIFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVK 480
            SA  +S   +  P +  ++  I K+LPHRYPF LVDKVI FE GKR +G+K I+ NEPQFTGHFP+R IMPGV+Q+EAMAQLGGLVCLQ P+SDG G FFF GVDGV+W++PVVPGDVLVMEMEL +W+ +FGIAKMTG GYVDG+ AVEVKEFTFAL K
Sbjct:   67 SAASVSELTSDVPVVMDIE-AIRKVLPHRYPFLLVDKVIEFEPGKRAVGVKTISANEPQFTGHFPERAIMPGVLQIEAMAQLGGLVCLQEPLSDGKGDFFFAGVDGVRWKRPVVPGDVLVMEMELLSWRAKFGIAKMTGAGYVDGQKAVEVKEFTFALAK 225          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A7S1XUS2_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUS2_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.330e-75
Identity = 108/142 (76.06%), Postives = 127/142 (89.44%), Query Frame = 1
Query:   58 DQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKD 483
            ++IA++LPHRYPFALVDKVI FEAGKR +GIK +TNNEPQFTGHFP+RPIMPGV+ +EAMAQLGG++ LQ P+S+G GTFFFGGV+GVK+RKPVVPGD LVMEMELT+WKE FGI KM G  +VDGK AV V+EFTFALVK+
Sbjct:   69 EKIAEVLPHRYPFALVDKVIEFEAGKRAVGIKQVTNNEPQFTGHFPERPIMPGVLMIEAMAQLGGVIALQEPVSNGEGTFFFGGVEGVKFRKPVVPGDTLVMEMELTSWKESFGICKMKGTAFVDGKPAVVVQEFTFALVKE 210          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A7S2XX69_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX69_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.670e-74
Identity = 106/144 (73.61%), Postives = 125/144 (86.81%), Query Frame = 1
Query:   58 DQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISD---GSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVK 480
            ++IA ILPHRYPFALVDKVI  E GK+++G+KCIT NEPQFTGHFPDRPIMPGV+ VEAMAQLGG++CL  P++D   GSG FFFGGVDGV+W++PVVPGDVLVMEMEL  W  +FGIAK+TGK YV+GK+AV+V EFTFAL K
Sbjct:   75 EEIASILPHRYPFALVDKVIEMEPGKKIVGVKCITMNEPQFTGHFPDRPIMPGVLMVEAMAQLGGVLCLSQPLNDPNEGSGIFFFGGVDGVRWKRPVVPGDVLVMEMELKKWNAKFGIAKLTGKAYVEGKIAVDVSEFTFALQK 218          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A1S6K873_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gambierdiscus belizeanus TaxID=439316 RepID=A0A1S6K873_9DINO)

HSP 1 Score: 231 bits (589), Expect = 4.960e-74
Identity = 107/140 (76.43%), Postives = 124/140 (88.57%), Query Frame = 1
Query:   64 IAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKD 483
            +AK+LPHRYPF LVDKV+ FE GK+++G+K +T NEPQFTGHFPDRPIMPGV+ VEAMAQLGGLVCLQ PISDG G FFF G+DG+K+RKPVVPGD LVMEMEL  ++E+ GIAKMTG+ +VDGK AVEVKEFTFALVKD
Sbjct:  119 VAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQAPISDGQGEFFFAGIDGIKFRKPVVPGDTLVMEMELLKFREKRGIAKMTGRAFVDGKRAVEVKEFTFALVKD 258          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A6T1MGQ0_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1MGQ0_9DINO)

HSP 1 Score: 231 bits (588), Expect = 7.990e-74
Identity = 104/140 (74.29%), Postives = 124/140 (88.57%), Query Frame = 1
Query:   64 IAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKD 483
            +AK+LPHRYPF LVDKV+ +E GKR +G+K +T NEPQFTGHFPDRPIMPGV+ VEAMAQLGG+VCLQPP+SDG G FFF G++G+K+RKPVVPGD LVMEMEL  ++E++GIAKM G  YVDGK+AVEVKEFTFALVK+
Sbjct:  123 VAKVLPHRYPFLLVDKVLEYEPGKRAVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGIVCLQPPVSDGQGEFFFAGINGIKFRKPVVPGDTLVMEMELVKFREKYGIAKMRGTAYVDGKVAVEVKEFTFALVKE 262          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A7R9UF58_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF58_9STRA)

HSP 1 Score: 229 bits (583), Expect = 8.330e-74
Identity = 106/148 (71.62%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   43 IFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVKDK 486
            +F V+ +IA +LPHRYPFALVDKV+ FEAGKR +GIKC+TNNEPQFTGHFPDRPIMPGV+ +EAMAQLGG++ LQ P+SDG G FFF G++GV++RKPVVPGDVLVMEMEL  WK  FGIAKM G  + DGK AV V+EFTFAL K++
Sbjct:   64 VFPVE-KIADVLPHRYPFALVDKVVEFEAGKRAVGIKCVTNNEPQFTGHFPDRPIMPGVLMIEAMAQLGGVIALQEPLSDGKGIFFFAGIEGVRFRKPVVPGDVLVMEMELVDWKPAFGIAKMKGTAFTDGKPAVVVQEFTFALAKEE 210          
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Match: A0A7S4D0T5_9EUGL (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D0T5_9EUGL)

HSP 1 Score: 231 bits (590), Expect = 2.310e-73
Identity = 107/146 (73.29%), Postives = 127/146 (86.99%), Query Frame = 1
Query:   43 IFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGIKCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFFFGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVEVKEFTFALVK 480
            + T++D IAK+LPHRYPF LVDKVI FEAGKR +G+K IT NEPQFTGHFPDRPIMPGV+ +EAMAQLGG++ LQ P+SDG G FFF G++GV+WR+PVVPGD LVMEMEL ++KERFGIAKM GK YVDG++AV+V EFTFAL K
Sbjct:  176 VSTIED-IAKVLPHRYPFLLVDKVIEFEAGKRAVGVKNITMNEPQFTGHFPDRPIMPGVLMIEAMAQLGGIIALQQPVSDGQGVFFFAGINGVRWRRPVVPGDTLVMEMELVSFKERFGIAKMKGKAYVDGQVAVDVAEFTFALAK 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig561.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C6N5_9STRA2.920e-9786.623-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
D7FWP0_ECTSI7.250e-8978.75Beta-hydroxyacyl-ACP dehydratase n=2 Tax=Ectocarpu... [more]
A0A7S2DJT4_9DINO1.230e-7776.223-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A0G4H2S5_VITBC1.010e-7569.383-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7S1XUS2_9STRA1.330e-7576.063-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7S2XX69_9STRA2.670e-7473.613-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A1S6K873_9DINO4.960e-7476.433-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A6T1MGQ0_9DINO7.990e-7474.293-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7R9UF58_9STRA8.330e-7471.623-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7S4D0T5_9EUGL2.310e-7373.293-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig561contigP-wetherbeei_contig561:2344..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWP0
PFAMsFabA
Model size489
Max annot lvl2759|Eukaryota
KEGG rclassRC00831,RC01095
KEGG koko:K02372
KEGG ReactionR04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.19e-89
EggNOG OGsCOG0764@1|root,2QQPZ@2759|Eukaryota
Ec32 ortholog descriptionbeta-hydroxyacyl-ACP dehydratase
Ec32 orthologEc-06_001380.1
EC4.2.1.59
DescriptionFabA-like domain
Cds size489
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.8471446-CDS-P-wetherbeei_contig561:2343..24541683186834.8471446-CDS-P-wetherbeei_contig561:2343..2454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig561 2344..2454 +
1683186834.859648-CDS-P-wetherbeei_contig561:2592..29701683186834.859648-CDS-P-wetherbeei_contig561:2592..2970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig561 2593..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig561.4.1prot_P-wetherbeei_contig561.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig561 2344..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig561.4.1

>prot_P-wetherbeei_contig561.4.1 ID=prot_P-wetherbeei_contig561.4.1|Name=mRNA_P-wetherbeei_contig561.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
SAGELSAKFAHPPAIFTVDDQIAKILPHRYPFALVDKVIHFEAGKRVIGI
KCITNNEPQFTGHFPDRPIMPGVMQVEAMAQLGGLVCLQPPISDGSGTFF
FGGVDGVKWRKPVVPGDVLVMEMELTAWKERFGIAKMTGKGYVDGKLAVE
VKEFTFALVKDK*
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mRNA from alignment at P-wetherbeei_contig561:2344..2970+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig561.4.1 ID=mRNA_P-wetherbeei_contig561.4.1|Name=mRNA_P-wetherbeei_contig561.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig561:2344..2970+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCAGGCGAGCTGAGCGCCAAGTTTGCGCACCCACCTGCAATCTTTAC AGTGGACGACCAAATCGCCAAGATCCTGCCCCACAGGTACCCATTTGCGC TCGTCGACAAGGTGAGAAAACGGAATAGCACAGCGGAAGCTGCCTCGGAC GCACAAATGCTGGAAAACTGCTGCACTATGGATCGACATCAAGTCACGAC GCGCCCCCCTCCCACTCCATTCTCACTAAGAAAACCCGCCAAACCCCAGG TGATCCACTTCGAGGCGGGCAAGCGCGTCATCGGCATCAAGTGCATCACG AACAACGAGCCGCAATTCACGGGCCACTTCCCCGATCGGCCCATCATGCC CGGGGTCATGCAAGTGGAGGCCATGGCGCAGCTCGGCGGCCTGGTCTGCC TGCAGCCGCCGATCAGCGACGGCAGTGGTACCTTCTTCTTCGGCGGCGTC GACGGCGTCAAGTGGCGCAAGCCGGTCGTGCCGGGCGATGTTCTTGTCAT GGAGATGGAGCTCACGGCGTGGAAGGAGCGCTTCGGCATCGCCAAGATGA CCGGCAAAGGCTACGTCGACGGGAAACTCGCCGTCGAGGTGAAGGAGTTC ACGTTTGCGCTCGTCAAGGACAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig561:2344..2970+

>mRNA_P-wetherbeei_contig561.4.1 ID=mRNA_P-wetherbeei_contig561.4.1|Name=mRNA_P-wetherbeei_contig561.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig561:2344..2970+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCAGGCGAGCTGAGCGCCAAGTTTGCGCACCCACCTGCAATCTTTAC
AGTGGACGACCAAATCGCCAAGATCCTGCCCCACAGGTACCCATTTGCGC
TCGTCGACAAGGTGATCCACTTCGAGGCGGGCAAGCGCGTCATCGGCATC
AAGTGCATCACGAACAACGAGCCGCAATTCACGGGCCACTTCCCCGATCG
GCCCATCATGCCCGGGGTCATGCAAGTGGAGGCCATGGCGCAGCTCGGCG
GCCTGGTCTGCCTGCAGCCGCCGATCAGCGACGGCAGTGGTACCTTCTTC
TTCGGCGGCGTCGACGGCGTCAAGTGGCGCAAGCCGGTCGTGCCGGGCGA
TGTTCTTGTCATGGAGATGGAGCTCACGGCGTGGAAGGAGCGCTTCGGCA
TCGCCAAGATGACCGGCAAAGGCTACGTCGACGGGAAACTCGCCGTCGAG
GTGAAGGAGTTCACGTTTGCGCTCGTCAAGGACAAGTGA
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