mRNA_P-wetherbeei_contig5605.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5605.1.1
Unique NamemRNA_P-wetherbeei_contig5605.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A3N5X4T6_9PROT (YkgJ family cysteine cluster protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X4T6_9PROT)

HSP 1 Score: 174 bits (441), Expect = 8.060e-54
Identity = 74/118 (62.71%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   46 NQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            NQYDC KCPGYCCSYPLIEV KRD++R+AKHF +S   A+ ++ R+D+SEK   LR++ DEHF +IC+ FDT++R+CT+Y +RPGVCR+YP    CGYY+FL+FEREHQ D  F+ATT
Sbjct:   12 NQYDCSKCPGYCCSYPLIEVGKRDIQRLAKHFGISYAQAETRYTRFDKSEKVRSLRQQEDEHFGRICKLFDTKKRQCTVYESRPGVCRDYPEGKRCGYYEFLQFEREHQDDPTFVATT 129          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A2W2ANS0_9HYPH (YkgJ family cysteine cluster protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2ANS0_9HYPH)

HSP 1 Score: 169 bits (429), Expect = 4.760e-52
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   49 QYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATTS 402
            +YDCLKCPGYCCSYP+IEV  +D ER+AKHF +SL  A+KKFF+     K   +RR+ DEHF KIC+FFDT ERRCTIY ARP  CR +PGE HCGYYDFLKFER  Q+D+ +I+TT+
Sbjct:    5 KYDCLKCPGYCCSYPVIEVKDKDAERIAKHFGLSLKDAEKKFFKSAHGYKR-VMRRQKDEHFGKICQFFDTTERRCTIYAARPSTCRIFPGEGHCGYYDFLKFERAGQEDETYISTTN 121          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A6G6X1K3_9HYPH (YkgJ family cysteine cluster protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6X1K3_9HYPH)

HSP 1 Score: 166 bits (421), Expect = 7.870e-51
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   40 PKNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            P+ +YDCLKCPGYCCSYP+IEV  RD  R+AKHF + L +A+KK+F+     K   +RRK D+HF +IC+FFDTE RRCTIY ARP  CR+YPG+ +CGY+DFL FER  Q+D D+I+TT
Sbjct:    2 PRKKYDCLKCPGYCCSYPVIEVKDRDAARIAKHFDIPLQIAEKKYFKSSYGYKR-VMRRKKDKHFGRICQFFDTEARRCTIYEARPWACRDYPGKDNCGYWDFLAFERNAQEDDDYISTT 120          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A0S8B7W3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B7W3_9PROT)

HSP 1 Score: 163 bits (412), Expect = 2.160e-49
Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   49 QYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            +YDC KCP YCCSYPLIE+ KRD+ R+AKHF ++   A+ +F +YD+ EKS  LR + D HF  IC F +T  R+CTIY ARPGVCR+YP  PHCGY++FLKFER  Q D  FIATT
Sbjct:   14 KYDCHKCPAYCCSYPLIEINKRDIARLAKHFGLTYKQAETRFTKYDKGEKSRALRHQKDRHFNSICMFLNTRTRQCTIYDARPGVCRDYPDVPHCGYWEFLKFERVQQDDPKFIATT 130          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: UPI0018C5CB02 (YkgJ family cysteine cluster protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C5CB02)

HSP 1 Score: 162 bits (409), Expect = 5.450e-49
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   43 KNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            K +YDCLKCPGYCCSYP+IEV  RD +R+AKHF +++ VA+KK+F+     K   ++RK D HF KIC+FFDT  RRCTIY ARP  C++YPGE +CGYYDFL FER  Q DK+FI+TT
Sbjct:    4 KLKYDCLKCPGYCCSYPVIEVKDRDAKRIAKHFGLTMEVAEKKYFKSAHGYKR-VMKRKKDPHFGKICQFFDTTARRCTIYLARPFPCKDYPGEDNCGYYDFLSFERLAQVDKNFISTT 121          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A537P1S8_9PROT (YkgJ family cysteine cluster protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P1S8_9PROT)

HSP 1 Score: 161 bits (408), Expect = 7.490e-49
Identity = 70/120 (58.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query:   40 PKNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            P+ +YDCLKCPGYCCSYP+IEV  RD  R+A+HF++ L  A+KKFF+     K   +RRK D+HF +IC+FFDTE RRCTIY ARP  CR++PG+ +CGY+DFL FER  Q+D+++++TT
Sbjct:    2 PRKKYDCLKCPGYCCSYPVIEVKDRDAARIARHFNMPLDKAEKKFFKSSHGYKR-VMRRKKDKHFGRICQFFDTEARRCTIYEARPWPCRDFPGKDNCGYWDFLSFERNAQEDENYVSTT 120          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: UPI0019CEE2E4 (YkgJ family cysteine cluster protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019CEE2E4)

HSP 1 Score: 161 bits (408), Expect = 7.490e-49
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   52 YDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATTS 402
            YDCLKCPGYCCSYP+IEV  RD ER+A+HF + L  A+KKFF+     K   +RR+ DE + KIC+FFDT+ERRCTIY ARP  CR +PGE HCGYYDFLKFER+ Q+D+ +++ T+
Sbjct:    6 YDCLKCPGYCCSYPVIEVKDRDAERIAQHFDMPLAKAEKKFFKKAHGYKR-IMRRQKDEIYGKICQFFDTKERRCTIYHARPSTCRVFPGEGHCGYYDFLKFERDGQEDETYVSVTN 121          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A847ZW83_9HYPH (YkgJ family cysteine cluster protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZW83_9HYPH)

HSP 1 Score: 160 bits (406), Expect = 2.570e-48
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 MAAKKTIPIKSSTPKNQ-----YDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            MA  KT    +  PK +     Y+CLKCPGYCCSYP+IEV  RD  R+AKHF + L  A+KK+F+     K   +RRK D+HF KIC+FFDT+ RRCTIY ARP  CRE+PG+ +CGY+DFL FERE Q+D++FI++T
Sbjct:    1 MATTKTKKKTAKAPKPRAKKLKYNCLKCPGYCCSYPVIEVKDRDAARIAKHFGLPLEKAEKKYFKSVEGYKR-VMRRKADKHFGKICQFFDTDARRCTIYLARPSTCREFPGDDNCGYFDFLAFERETQKDEEFISST 137          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A849E6H5_9HYPH (YkgJ family cysteine cluster protein n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849E6H5_9HYPH)

HSP 1 Score: 160 bits (404), Expect = 2.950e-48
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   34 STPKNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFEREHQQDKDFIATT 399
            +TPK  YDC KCPGYCCSYP+I VTKRD ER+AKHF ++L  A++++   D   K   L RK+DEHF +IC+FFDT++R CTIY+ARP  CR +PGE  CGY+DFLKFER  Q+D D+++TT
Sbjct:    2 TTPK--YDCTKCPGYCCSYPVINVTKRDAERIAKHFGITLEQAEERYLHSDHGYKR-LLNRKDDEHFSRICQFFDTDQRNCTIYSARPSTCRTFPGET-CGYWDFLKFERAGQKDDDYVSTT 119          
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Match: A0A3N5H7I8_9HYPH (YkgJ family cysteine cluster protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5H7I8_9HYPH)

HSP 1 Score: 159 bits (401), Expect = 5.120e-48
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   40 PKNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVSLTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPGVCREYPGEPHCGYYDFLKFER 363
            P  +YDCLKCPGYCCSYP+IEV  RD ER+AKHF +SL  A+KK+F+     K   +RRK DEHF KIC+FFDT ERRCTIY ARP  CR +PGE  CGYYDFLKFER
Sbjct:    2 PAKKYDCLKCPGYCCSYPVIEVKDRDAERIAKHFGLSLKAAEKKYFKSAHGYKR-VMRRKADEHFGKICQFFDTTERRCTIYLARPSTCRVFPGEGRCGYYDFLKFER 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5605.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5X4T6_9PROT8.060e-5462.71YkgJ family cysteine cluster protein n=1 Tax=Betap... [more]
A0A2W2ANS0_9HYPH4.760e-5265.25YkgJ family cysteine cluster protein n=1 Tax=Aestu... [more]
A0A6G6X1K3_9HYPH7.870e-5160.83YkgJ family cysteine cluster protein n=2 Tax=Hypho... [more]
A0A0S8B7W3_9PROT2.160e-4960.68Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0018C5CB025.450e-4962.18YkgJ family cysteine cluster protein n=1 Tax=Aestu... [more]
A0A537P1S8_9PROT7.490e-4958.33YkgJ family cysteine cluster protein n=1 Tax=Alpha... [more]
UPI0019CEE2E47.490e-4961.54YkgJ family cysteine cluster protein n=1 Tax=Hypho... [more]
A0A847ZW83_9HYPH2.570e-4855.80YkgJ family cysteine cluster protein n=1 Tax=Phyll... [more]
A0A849E6H5_9HYPH2.950e-4859.84YkgJ family cysteine cluster protein n=1 Tax=Ander... [more]
A0A3N5H7I8_9HYPH5.120e-4867.59YkgJ family cysteine cluster protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5605contigP-wetherbeei_contig5605:290..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog582899.Hden_2183
PFAMsCxxCxxCC
Model size405
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06940
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.49e-46
EggNOG OGsCOG0727@1|root,COG0727@2|Bacteria,1N5PC@1224|Proteobacteria,2UFEE@28211|Alphaproteobacteria
DescriptionPutative zinc- or iron-chelating domain
Cds size405
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.1724856-CDS-P-wetherbeei_contig5605:289..6941683186834.1724856-CDS-P-wetherbeei_contig5605:289..694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5605 290..694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5605.1.1prot_P-wetherbeei_contig5605.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5605 290..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5605.1.1

>prot_P-wetherbeei_contig5605.1.1 ID=prot_P-wetherbeei_contig5605.1.1|Name=mRNA_P-wetherbeei_contig5605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MAAKKTIPIKSSTPKNQYDCLKCPGYCCSYPLIEVTKRDMERVAKHFSVS
LTVAKKKFFRYDRSEKSWCLRRKNDEHFKKICRFFDTEERRCTIYTARPG
VCREYPGEPHCGYYDFLKFEREHQQDKDFIATTS*
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mRNA from alignment at P-wetherbeei_contig5605:290..694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5605.1.1 ID=mRNA_P-wetherbeei_contig5605.1.1|Name=mRNA_P-wetherbeei_contig5605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig5605:290..694+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCAAAAAAACCATCCCCATCAAGAGTTCCACCCCGAAGAACCA GTACGACTGCCTGAAATGCCCGGGCTACTGCTGCAGCTACCCGCTGATCG AGGTCACCAAGCGCGACATGGAGCGCGTGGCCAAGCACTTCAGCGTGTCC CTGACGGTGGCGAAGAAGAAGTTCTTTCGCTACGACCGCAGCGAGAAGAG CTGGTGCCTGCGCCGCAAGAACGACGAGCACTTCAAGAAGATCTGCCGCT TCTTCGACACCGAGGAGCGCCGCTGCACGATCTACACCGCGCGGCCCGGC GTCTGCCGCGAGTACCCCGGCGAGCCGCACTGCGGGTACTACGATTTCCT GAAGTTCGAGCGCGAGCACCAGCAAGATAAGGATTTCATCGCGACCACGT CGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5605:290..694+

>mRNA_P-wetherbeei_contig5605.1.1 ID=mRNA_P-wetherbeei_contig5605.1.1|Name=mRNA_P-wetherbeei_contig5605.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig5605:290..694+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCAAAAAAACCATCCCCATCAAGAGTTCCACCCCGAAGAACCA
GTACGACTGCCTGAAATGCCCGGGCTACTGCTGCAGCTACCCGCTGATCG
AGGTCACCAAGCGCGACATGGAGCGCGTGGCCAAGCACTTCAGCGTGTCC
CTGACGGTGGCGAAGAAGAAGTTCTTTCGCTACGACCGCAGCGAGAAGAG
CTGGTGCCTGCGCCGCAAGAACGACGAGCACTTCAAGAAGATCTGCCGCT
TCTTCGACACCGAGGAGCGCCGCTGCACGATCTACACCGCGCGGCCCGGC
GTCTGCCGCGAGTACCCCGGCGAGCCGCACTGCGGGTACTACGATTTCCT
GAAGTTCGAGCGCGAGCACCAGCAAGATAAGGATTTCATCGCGACCACGT
CGTAA
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