mRNA_P-wetherbeei_contig56024.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56024.1.1
Unique NamemRNA_P-wetherbeei_contig56024.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A352KCU1_9PROT (ETC complex I subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KCU1_9PROT)

HSP 1 Score: 156 bits (394), Expect = 1.400e-47
Identity = 69/102 (67.65%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            M+ARIYQP+KNAMQSG+ NS  W+++FE+ AAK++EPLMGWTSASDM+N E+RL+FDSREAAIAFA+KHG+ YQ+I P   +R ++ Y+DNFR+DRT PWTH
Sbjct:    1 MVARIYQPAKNAMQSGRGNSDHWLMDFEASAAKRVEPLMGWTSASDMKNNEVRLKFDSREAAIAFAEKHGIDYQLIPPTPKRRRIRTYSDNFRSDRTMPWTH 102          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A3C0TUH9_9PROT (ETC complex I subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUH9_9PROT)

HSP 1 Score: 155 bits (391), Expect = 4.000e-47
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            M  RI+QP++NAMQSG + +  WV+E+E E AKKIEPLMGWTS+SDMR+ ELRL+FDSREAAIAFA KH L YQVIEPRK +R++K YADNFRA R  PWTH
Sbjct:    1 MAVRIFQPARNAMQSGYAGADQWVLEYEPERAKKIEPLMGWTSSSDMRHNELRLKFDSREAAIAFAQKHNLVYQVIEPRKRQRLIKTYADNFRAGRPVPWTH 102          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: D5VJ85_CAUST (ETC complex I subunit conserved region n=36 Tax=Caulobacter TaxID=75 RepID=D5VJ85_CAUST)

HSP 1 Score: 133 bits (335), Expect = 1.330e-38
Identity = 60/102 (58.82%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARIY+P+KNAMQSGK+ ++ WV+EFE  +A+K +PLMGWT +SDM N ++RL FD+R+ A+A+A +H +A+Q+ EP+  KR++KAYADNF A+R  PWTH
Sbjct:    1 MLARIYRPAKNAMQSGKAKTKDWVLEFEPASARKPDPLMGWTQSSDM-NGQIRLTFDTRDEAVAYAQRHEIAFQLFEPKTPKRIIKAYADNFAANRKQPWTH 101          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A2A5ESC5_9HYPH (ETC complex I subunit n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ESC5_9HYPH)

HSP 1 Score: 133 bits (335), Expect = 1.330e-38
Identity = 60/102 (58.82%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARIY+P+K AMQSG++N+  WV+EFE+E A+ I+PLMG+TS+ DM N+++ ++F+++E AIAFA+KHGLAYQV+EP+K  R++KAY+DNF+  R   WTH
Sbjct:    1 MLARIYRPTKTAMQSGRANTHKWVLEFEAETARSIDPLMGYTSSGDM-NSQVVMQFEAKEQAIAFAEKHGLAYQVVEPKKPTRLIKAYSDNFKFGRIGQWTH 101          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A2R7LNU6_9CAUL (ETC complex I subunit n=6 Tax=Caulobacterales TaxID=204458 RepID=A0A2R7LNU6_9CAUL)

HSP 1 Score: 132 bits (333), Expect = 2.680e-38
Identity = 60/102 (58.82%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARIY+P+K AMQSGK+ ++ W++EFE  +A+K +PLMGWT +SDM N ++RL F++RE A+A+A KHGLA+Q+ +P+  KR++KAYADNF A R  PWTH
Sbjct:    1 MLARIYRPAKTAMQSGKAKTKDWLLEFEPASARKSDPLMGWTQSSDM-NGQVRLTFETREEAVAYAQKHGLAFQLFDPKTPKRIIKAYADNFAAGRRQPWTH 101          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A3B9YSY4_9PROT (ETC complex I subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YSY4_9PROT)

HSP 1 Score: 132 bits (332), Expect = 3.810e-38
Identity = 60/102 (58.82%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARIYQP+K A QSG++N+Q W++EFE E A+ I+PLMGWTS++DM+  +LRL+F +RE A+A+A++HG+A+QV EP+  KR +KAYADNF+  R   WTH
Sbjct:    1 MLARIYQPAKTATQSGRANAQDWLLEFEPETARSIDPLMGWTSSTDMKG-QLRLKFATREEAVAYAERHGIAFQVFEPQPPKRTIKAYADNFKFTRKGLWTH 101          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: UPI001675C248 (ETC complex I subunit n=1 Tax=Parvularcula lutaonensis TaxID=491923 RepID=UPI001675C248)

HSP 1 Score: 131 bits (330), Expect = 7.910e-38
Identity = 58/102 (56.86%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            M ARIY+PS+ AMQSGK+ ++ WV+EFE E AK+++PLMGWTS+ DM+  ++ LRFD++E A+A+A +HG+ ++VIEP   KR LKAY+DNF  +R  PWTH
Sbjct:    1 MFARIYKPSRTAMQSGKAKAEDWVLEFEQEYAKRLDPLMGWTSSGDMQAGQVLLRFDTKEQAVAYAKEHGIPHRVIEPTSGKRTLKAYSDNFTTNRRKPWTH 102          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A525L602_9CAUL (ETC complex I subunit n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525L602_9CAUL)

HSP 1 Score: 130 bits (328), Expect = 1.600e-37
Identity = 56/102 (54.90%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARI++PSK AMQSGK+ +Q WV+EFE  +A + +PLMGWT  +D  +T+++L FDS+E A+ +AD+HG+A+Q+++P+  KR++KAYADNF  +R  PWTH
Sbjct:    1 MLARIFRPSKTAMQSGKAKTQEWVLEFEPRSALRSDPLMGWTVTADTASTQVQLWFDSKEEAVRYADQHGIAFQLLDPKPAKRIIKAYADNFAFNRKVPWTH 102          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A4Q3SAW1_9CAUL (ETC complex I subunit n=2 Tax=Caulobacteraceae TaxID=76892 RepID=A0A4Q3SAW1_9CAUL)

HSP 1 Score: 130 bits (327), Expect = 2.200e-37
Identity = 58/102 (56.86%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            MLARI++P+K AMQSGK+ +  WV+EFE  AAK+ +PL GWT++ DM N ++RL F++R+ A+A+A KHG+A+QVIEP++ ++++KAYADNF  +R APWTH
Sbjct:    1 MLARIFRPAKTAMQSGKAKTNDWVLEFEPAAAKRNDPLTGWTTSVDM-NGQIRLTFETRDEAVAYAQKHGIAFQVIEPKEPRKIIKAYADNFATNRRAPWTH 101          
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Match: A0A8J2V473_9PROT (NADH-ubiquinone oxidoreductase n=2 Tax=Aquisalinus TaxID=1795639 RepID=A0A8J2V473_9PROT)

HSP 1 Score: 130 bits (326), Expect = 3.220e-37
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNTELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPWTH 306
            M ARIYQP+K AMQSGK  ++ WV+EFE  AA++++PLMGW S+ DM++ ++RL+FDS+EAA+A+A +HG+ ++V E    K V+KAY+DNF A R  PWTH
Sbjct:    1 MFARIYQPAKTAMQSGKGKTRSWVLEFEQSAARRVDPLMGWISSDDMKSNQVRLKFDSKEAAVAYATEHGIPHKVSESHGGKPVIKAYSDNFSARRRKPWTH 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KCU1_9PROT1.400e-4767.65ETC complex I subunit n=1 Tax=Alphaproteobacteria ... [more]
A0A3C0TUH9_9PROT4.000e-4770.59ETC complex I subunit n=1 Tax=Alphaproteobacteria ... [more]
D5VJ85_CAUST1.330e-3858.82ETC complex I subunit conserved region n=36 Tax=Ca... [more]
A0A2A5ESC5_9HYPH1.330e-3858.82ETC complex I subunit n=1 Tax=Rhodobiaceae bacteri... [more]
A0A2R7LNU6_9CAUL2.680e-3858.82ETC complex I subunit n=6 Tax=Caulobacterales TaxI... [more]
A0A3B9YSY4_9PROT3.810e-3858.82ETC complex I subunit n=1 Tax=Alphaproteobacteria ... [more]
UPI001675C2487.910e-3856.86ETC complex I subunit n=1 Tax=Parvularcula lutaone... [more]
A0A525L602_9CAUL1.600e-3754.90ETC complex I subunit n=1 Tax=Phenylobacterium sp.... [more]
A0A4Q3SAW1_9CAUL2.200e-3756.86ETC complex I subunit n=2 Tax=Caulobacteraceae Tax... [more]
A0A8J2V473_9PROT3.220e-3755.88NADH-ubiquinone oxidoreductase n=2 Tax=Aquisalinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56024contigP-wetherbeei_contig56024:117..425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog509190.Cseg_1689
PFAMsETC_C1_NDUFA4
Model size309
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.18e-39
EggNOG OGs2C7TH@1|root,32RJS@2|Bacteria,1MZK8@1224|Proteobacteria,2UC2R@28211|Alphaproteobacteria,2KGYS@204458|Caulobacterales
DescriptionETC complex I subunit
Cds size309
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.9644754-CDS-P-wetherbeei_contig56024:116..4251683186833.9644754-CDS-P-wetherbeei_contig56024:116..425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56024 117..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56024.1.1prot_P-wetherbeei_contig56024.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56024 117..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56024.1.1

>prot_P-wetherbeei_contig56024.1.1 ID=prot_P-wetherbeei_contig56024.1.1|Name=mRNA_P-wetherbeei_contig56024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MLARIYQPSKNAMQSGKSNSQMWVVEFESEAAKKIEPLMGWTSASDMRNT
ELRLRFDSREAAIAFADKHGLAYQVIEPRKTKRVLKAYADNFRADRTAPW
TH*
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mRNA from alignment at P-wetherbeei_contig56024:117..425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56024.1.1 ID=mRNA_P-wetherbeei_contig56024.1.1|Name=mRNA_P-wetherbeei_contig56024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig56024:117..425+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCCAGAATCTATCAGCCGTCCAAAAACGCGATGCAATCAGGAAA ATCGAACAGCCAGATGTGGGTGGTTGAATTTGAATCTGAAGCTGCAAAGA AAATCGAACCCCTGATGGGCTGGACCAGCGCCTCTGATATGCGCAATACT GAGCTTCGTCTGCGTTTCGATAGCCGCGAGGCGGCGATTGCCTTTGCAGA CAAGCATGGTTTGGCGTATCAGGTCATTGAGCCCCGCAAAACCAAACGGG TGCTTAAGGCCTATGCGGATAATTTCCGCGCAGACCGCACAGCGCCATGG ACGCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56024:117..425+

>mRNA_P-wetherbeei_contig56024.1.1 ID=mRNA_P-wetherbeei_contig56024.1.1|Name=mRNA_P-wetherbeei_contig56024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig56024:117..425+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCCAGAATCTATCAGCCGTCCAAAAACGCGATGCAATCAGGAAA
ATCGAACAGCCAGATGTGGGTGGTTGAATTTGAATCTGAAGCTGCAAAGA
AAATCGAACCCCTGATGGGCTGGACCAGCGCCTCTGATATGCGCAATACT
GAGCTTCGTCTGCGTTTCGATAGCCGCGAGGCGGCGATTGCCTTTGCAGA
CAAGCATGGTTTGGCGTATCAGGTCATTGAGCCCCGCAAAACCAAACGGG
TGCTTAAGGCCTATGCGGATAATTTCCGCGCAGACCGCACAGCGCCATGG
ACGCATTAA
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