mRNA_P-wetherbeei_contig56012.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56012.1.1
Unique NamemRNA_P-wetherbeei_contig56012.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI000930F9E4 (OmpA family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000930F9E4)

HSP 1 Score: 159 bits (402), Expect = 2.780e-44
Identity = 90/155 (58.06%), Postives = 111/155 (71.61%), Query Frame = 1
Query:   19 MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAKSPDA------AAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
            MLRRVA++L  L + G  A+FAA HLGI LPW+ AA D E PS +R+ + +  A      AAEKA+ +TTAAL     A    GSV +DISRISPDGTSV AG A+P++YVTVLE+GKPAGT KTDS G WSL+TE++F S DPKL+Y+V R  P
Sbjct:    1 MLRRVAVLLILLAISG-GALFAARHLGIPLPWDFAATDPEPPSKDREASPAKGAEEPAKSAAEKAIEDTTAALAPQEPAPAQPGSVSIDISRISPDGTSVIAGHAEPDSYVTVLEEGKPAGTAKTDSGGNWSLATEHRFASTDPKLSYEVRRTPP 154          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI000A03DBFC (OmpA family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000A03DBFC)

HSP 1 Score: 152 bits (383), Expect = 1.810e-41
Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 TVAEVSMLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAKSPDA-------------AAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
            T  EV+MLRRVALVL  L   G+AAIFAAG  G+ LPW+IA+     P+       S D              +AE  + +T AAL  +   +P SG+V +DISRISPDG+SVFAGRA+P+TYVTV+E+GKPAGTVK+D  GEWSL T+++F S DP LT+  S+  P
Sbjct:    2 TQVEVAMLRRVALVLLLLAASGLAAIFAAGRFGVTLPWDIASSTAPDPAQKTAAPVSKDXXXXXXXXXXXAAKSAETVIDQTVAALGKSDEPKPASGNVEIDISRISPDGSSVFAGRAEPDTYVTVMENGKPAGTVKSDEQGEWSLVTDHRFASTDPTLTFSTSKTPP 169          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: V5SH05_9HYPH (OmpA-like domain-containing protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SH05_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 5.650e-38
Identity = 82/159 (51.57%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   19 MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDH-ESPSTNRDDAKSP-------DAAAEKALRETTAAL--ENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
            MLRR ALVL  LLV   A IFAA  LG++LPW +A+    E PST  +  ++P        A+AE+A+ +T AAL  + A   +PP G V LDISRISPDG SVFAGRA+P  Y+TV  DGK AGTV+ D  G WSLSTE+KF   DP +T++ +   P
Sbjct:    1 MLRRTALVLLGLLVTAAAGIFAADRLGMDLPWTVASTQAPEQPSTENEAPRAPGEAPSKASASAERAIEDTVAALAGDTAADTQPPPGDVALDISRISPDGPSVFAGRAEPRAYITVYADGKSAGTVQADDGGSWSLSTEHKFAGADPTITFESAPTPP 159          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A6I3KLL9_9HYPH (OmpA family protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KLL9_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 3.010e-14
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  145 STNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSV-VLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
            +T ++DAK+P    E    E  A  +    A+P  G     DI+RI P+GTSVFAGRA+P+++VT+  DGK  GT + D NGEW+ +TE K  + D KL
Sbjct:   38 TTKQEDAKAP---GESPKGEIEAMQDALAPAKPGDGQAPAFDIARIDPNGTSVFAGRAEPKSFVTITADGKEIGTAEADENGEWTFTTEAKIPNPDAKL 133          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI00092FE092 (OmpA family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00092FE092)

HSP 1 Score: 77.4 bits (189), Expect = 8.300e-14
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  136 ESPSTNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
            E P+T  D A    A    AL +   ALE  P   P  GS   DI+RI P+GTSVFAGR +P + VT+  DGK  GT + D NGEW+ +TE + ++ D KL
Sbjct:   40 EEPATKADTANRQPADDIDALHK---ALERNP--TPSDGSASFDIARIDPEGTSVFAGRGEPNSLVTITVDGKEIGTAQVDENGEWTFTTEGRISNPDGKL 135          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A2W4KSQ5_9PROT (OmpA-like domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KSQ5_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 2.120e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  262 LDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
             D++RISP+G SVFAG+A P + VTV  DGKP G+ K D  GEW+L TE   TS DP L
Sbjct:   77 FDVARISPNGPSVFAGQAPPNSLVTVTVDGKPVGSTKVDERGEWTLVTEQPITSPDPVL 135          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A6I0EIY7_HYPSQ (OmpA family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EIY7_HYPSQ)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-11
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  136 ESPSTNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
            +SP+     A + D A E  L+E  +   +  GA P       DI+RI P+GTSVFAGRA+P + VT+  DGK  GT + D NGEW+ +T+ K  + + KL
Sbjct:   39 QSPTKAAKSATAQDEAQE--LQEALSPPSDTQGAAPS-----FDIARIDPNGTSVFAGRAEPRSVVTITADGKEIGTAQADENGEWTFTTDAKIPNAEAKL 132          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A2E5PDE6_9PROT (Peptidoglycan-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PDE6_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 5.660e-10
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  187 EKALRETTAALENAPGAE-----PPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLT 441
            E+AL  + AALE     +     P   S   D+ RISP+G +V AGRA+P + +TVLEDG P GTV+ D  GEW L       S D +L+
Sbjct:   68 EQALDSSAAALEKTKAKQVVETPPLVSSPSFDVVRISPNGRAVIAGRAEPGSQITVLEDGIPLGTVEVDRRGEWVLVPNSNLKSGDRQLS 157          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A1G8FML4_9PROT (LysM domain-containing protein n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G8FML4_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 3.270e-6
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1
Query:  244 PSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
            P G+   D++R+   G  V AGRA P++ VTV  DG+P GT +TD+ GE+    +        +LT     AAP
Sbjct:   72 PPGTPSFDVARVDDQGNLVVAGRAAPDSEVTVSIDGEPKGTARTDARGEFVFLPDQPLPPGPHQLTLSARPAAP 145          
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A124II48_9PROT (OmpA-like domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A124II48_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 8.230e-6
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1
Query:  262 LDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRA 459
             D++R+SPDG SVFAGRA P   V ++      GT   DS G W+L TE +      +L  + + A
Sbjct:   89 FDVARVSPDGVSVFAGRARPFERVNIIVGDLVVGTASADSQGNWTLVTEERIPDPSAELHLETATA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI000930F9E42.780e-4458.06OmpA family protein n=1 Tax=Hyphomicrobium sp. CS1... [more]
UPI000A03DBFC1.810e-4151.19OmpA family protein n=1 Tax=Hyphomicrobium zavarzi... [more]
V5SH05_9HYPH5.650e-3851.57OmpA-like domain-containing protein n=1 Tax=Hyphom... [more]
A0A6I3KLL9_9HYPH3.010e-1444.44OmpA family protein n=1 Tax=Hyphomicrobium album T... [more]
UPI00092FE0928.300e-1445.54OmpA family protein n=1 Tax=Hyphomicrobium sp. NDB... [more]
A0A2W4KSQ5_9PROT2.120e-1257.63OmpA-like domain-containing protein n=1 Tax=Proteo... [more]
A0A6I0EIY7_HYPSQ1.140e-1141.58OmpA family protein n=1 Tax=Hyphomicrobium sp. Tax... [more]
A0A2E5PDE6_9PROT5.660e-1043.33Peptidoglycan-binding protein n=1 Tax=Rhodospirill... [more]
A0A1G8FML4_9PROT3.270e-637.84LysM domain-containing protein n=1 Tax=Roseospiril... [more]
A0A124II48_9PROT8.230e-639.39OmpA-like domain-containing protein n=1 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56012contigP-wetherbeei_contig56012:2..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911260_gene3488
Preferred nameplpD
PFAMsOmpA,SmpA_OmlA
Model size465
Max annot lvl2|Bacteria
KEGG koko:K03286
KEGG TC1.B.6
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.22e-40
EggNOG OGsCOG2885@1|root,COG2885@2|Bacteria
Descriptionchlorophyll binding
Cds size447
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.608746-CDS-P-wetherbeei_contig56012:1..4481683186833.608746-CDS-P-wetherbeei_contig56012:1..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56012 2..448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.618091-UTR-P-wetherbeei_contig56012:448..4661683186833.618091-UTR-P-wetherbeei_contig56012:448..466Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56012 449..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56012.1.1prot_P-wetherbeei_contig56012.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56012 2..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56012.1.1

>prot_P-wetherbeei_contig56012.1.1 ID=prot_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAK
SPDAAAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRAD
PETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP
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mRNA from alignment at P-wetherbeei_contig56012:2..466-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56012.1.1 ID=mRNA_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig56012:2..466- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTGGCAGAGGTGTCAATGCTCCGGCGCGTTGCGCTAGTCCTCTTCTC GTTGCTCGTTCTCGGCGTGGCCGCGATTTTCGCGGCGGGCCATTTGGGCA TCAACCTGCCGTGGGAGATCGCGGCAGTCGATCACGAGTCGCCCTCGACA AATCGTGACGACGCGAAGTCGCCCGATGCCGCGGCCGAGAAGGCCTTGCG CGAGACGACGGCCGCTCTCGAAAACGCCCCTGGCGCTGAACCGCCCTCCG GCAGCGTCGTGCTCGACATTTCTCGTATCTCGCCCGACGGCACCTCCGTG TTCGCCGGACGCGCCGATCCCGAGACCTACGTCACGGTGCTTGAGGACGG AAAGCCTGCGGGCACGGTAAAGACCGACTCGAACGGCGAATGGAGCCTCT CCACCGAGTACAAGTTCACGAGCAACGACCCCAAGCTCACCTATCAGGTG AGCCGCGCGGCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56012:2..466-

>mRNA_P-wetherbeei_contig56012.1.1 ID=mRNA_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig56012:2..466- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCGGCGCGTTGCGCTAGTCCTCTTCTCGTTGCTCGTTCTCGGCGT
GGCCGCGATTTTCGCGGCGGGCCATTTGGGCATCAACCTGCCGTGGGAGA
TCGCGGCAGTCGATCACGAGTCGCCCTCGACAAATCGTGACGACGCGAAG
TCGCCCGATGCCGCGGCCGAGAAGGCCTTGCGCGAGACGACGGCCGCTCT
CGAAAACGCCCCTGGCGCTGAACCGCCCTCCGGCAGCGTCGTGCTCGACA
TTTCTCGTATCTCGCCCGACGGCACCTCCGTGTTCGCCGGACGCGCCGAT
CCCGAGACCTACGTCACGGTGCTTGAGGACGGAAAGCCTGCGGGCACGGT
AAAGACCGACTCGAACGGCGAATGGAGCCTCTCCACCGAGTACAAGTTCA
CGAGCAACGACCCCAAGCTCACCTATCAGGTGAGCCGCGCGGCCCCC
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