mRNA_P-wetherbeei_contig55998.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55998.1.1
Unique NamemRNA_P-wetherbeei_contig55998.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A7C4TP59_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TP59_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 5.220e-53
Identity = 86/114 (75.44%), Postives = 105/114 (92.11%), Query Frame = 1
Query:    1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
            MAD GLTPRQ+AVL TVS NEGLSQTNLV++TGIDRSTLADIIRRM++KGL+ RRRTKEDARAY+V+LT+EG RVL++++PLAR+VDDK+L+ L + +RERFLQDLGKIVR +G
Sbjct:   33 MADGGLTPRQYAVLYTVSHNEGLSQTNLVEKTGIDRSTLADIIRRMLRKGLLARRRTKEDARAYSVKLTDEGWRVLKSAEPLARRVDDKILAALPTQDRERFLQDLGKIVRNIG 146          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A101VID2_9PROT (MarR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VID2_9PROT)

HSP 1 Score: 163 bits (412), Expect = 2.910e-49
Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
            M    LTPRQ+AVLV V++NEGLSQTNLVD TGIDRSTLADIIRRM+KKGL+QRRRTKEDARAYAV+LTE+G R+L A++P+A+KVD+++L  L +AERERFL DL  IV  LG
Sbjct:   33 MRTEDLTPRQYAVLVAVAENEGLSQTNLVDMTGIDRSTLADIIRRMLKKGLVQRRRTKEDARAYAVKLTEDGRRILEAAEPMAKKVDERILQALPAAERERFLSDLSMIVEALG 146          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A6I3KKW2_9HYPH (MarR family transcriptional regulator n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KKW2_9HYPH)

HSP 1 Score: 161 bits (408), Expect = 1.010e-48
Identity = 81/114 (71.05%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
            M    LTPRQ+AVLV VS NEG+SQT LV++TG+DRSTLADI+RRM+KKGL+QRRRTKEDARAY+V+LT+EG +VL+A+DPLAR+VDD++L VL  A+RERFLQDL +IV+ LG
Sbjct:   37 MVAGDLTPRQYAVLVAVSLNEGVSQTLLVEKTGVDRSTLADIVRRMLKKGLLQRRRTKEDARAYSVKLTDEGWKVLKAADPLARRVDDRILGVLPGAQRERFLQDLNQIVKALG 150          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2W4TJ55_9PROT (MarR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TJ55_9PROT)

HSP 1 Score: 161 bits (407), Expect = 1.480e-48
Identity = 82/109 (75.23%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    7 DAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVR 333
            D  LTPRQ+A+L+TV+QNEGLSQT+LV+RTGIDRSTLAD+IRRMIKKGL+QRRRT+EDARAYAV+LTEEG RVLR ++PLAR+ D+KVLSVLS  +RERFL+ L +I+R
Sbjct:   41 DGELTPRQYAILLTVAQNEGLSQTDLVERTGIDRSTLADVIRRMIKKGLLQRRRTREDARAYAVKLTEEGWRVLRQTEPLARRADEKVLSVLSVVDRERFLKGLREIIR 149          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2S5PBX5_HYPSQ (MarR family transcriptional regulator n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PBX5_HYPSQ)

HSP 1 Score: 161 bits (407), Expect = 1.670e-48
Identity = 81/113 (71.68%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
            M  + LTPRQFAVLVTVSQNEGLSQTNLV++TGIDRSTLADI+RRM+KKGL+QRRRTKEDARAY+V+L++EG R L++++P+AR+VDDKVL+VLS  +R+RF+ DL  IV  L
Sbjct:   38 MGASDLTPRQFAVLVTVSQNEGLSQTNLVEKTGIDRSTLADIVRRMLKKGLLQRRRTKEDARAYSVKLSDEGWRTLKSAEPMARRVDDKVLAVLSGPQRDRFVNDLNTIVEAL 150          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2S5MAT9_HYPSQ (MarR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MAT9_HYPSQ)

HSP 1 Score: 159 bits (403), Expect = 5.140e-48
Identity = 81/114 (71.05%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
            MA   LTPRQFAVLVTVSQNEGLSQTNLV++TGIDRSTLAD++RRM+KKGLI+RRRT+ DARAY+V+LT+EG+R+L+ +DPLA +VDD++LS L  A RERF+QDL  IV  +G
Sbjct:   33 MATDSLTPRQFAVLVTVSQNEGLSQTNLVEQTGIDRSTLADVVRRMLKKGLIKRRRTRHDARAYSVKLTDEGSRMLKIADPLADRVDDRILSSLPVARRERFMQDLRAIVHGMG 146          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A849TQV1_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TQV1_9HYPH)

HSP 1 Score: 158 bits (399), Expect = 2.090e-47
Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    7 DAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
            D  LTPRQ+AVL TV+QNEGLSQT LVDRTGIDRSTLADI+RRM+KKGL+QRRRTKEDARAYAV+LTEEG R+LR ++P+AR+VD+++L  L + +RE+FL DL  IV  L
Sbjct:   35 DGDLTPRQYAVLATVAQNEGLSQTGLVDRTGIDRSTLADIVRRMLKKGLLQRRRTKEDARAYAVKLTEEGKRMLRTAEPIARRVDERILEGLQAKQREQFLDDLSTIVTTL 145          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A258L578_9HYPH (MarR family transcriptional regulator n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A258L578_9HYPH)

HSP 1 Score: 158 bits (399), Expect = 2.510e-47
Identity = 79/109 (72.48%), Postives = 98/109 (89.91%), Query Frame = 1
Query:   16 LTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
            LTPRQ+AVL+TVSQNEGLSQT LV++TGIDRSTLADI+RRM+KKGL+ RRRT+EDARAYAVRLT++G + LR +DP+AR+VD+++LS L +A+RERFL DLG IV  LG
Sbjct:   46 LTPRQYAVLLTVSQNEGLSQTQLVEKTGIDRSTLADIVRRMLKKGLLSRRRTREDARAYAVRLTDDGWKSLRTADPVARRVDERILSALPAAQRERFLTDLGTIVTALG 154          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2W4LBZ2_9PROT (MarR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LBZ2_9PROT)

HSP 1 Score: 156 bits (395), Expect = 8.460e-47
Identity = 78/108 (72.22%), Postives = 100/108 (92.59%), Query Frame = 1
Query:   16 LTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
            LTPRQFA+LV V+QNEGLSQT+LV++TGIDRSTLAD++RRM+KKGL+QRRRT+EDARAYAV+LTEEG R L+ ++PLAR+ D+K+LS+LS++ERERFL+ L +IVR L
Sbjct:   37 LTPRQFAILVAVAQNEGLSQTDLVEKTGIDRSTLADVVRRMLKKGLLQRRRTREDARAYAVKLTEEGWRTLKRAEPLARRADEKLLSLLSASERERFLKGLMEIVRSL 144          
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: D8JXD2_HYPDA (Transcriptional regulator, MarR family n=4 Tax=Hyphomicrobium TaxID=81 RepID=D8JXD2_HYPDA)

HSP 1 Score: 155 bits (393), Expect = 1.700e-46
Identity = 76/109 (69.72%), Postives = 99/109 (90.83%), Query Frame = 1
Query:   13 GLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
            GLTPRQ+AVL+TV+QNEGL+QT LV+ TGIDRSTLADIIRRM+KKG++QRRRT+ DARAY+V++TE+G R+L+A DPLAR+VD+++L+ L+ A+RERFLQDL  IV+ L
Sbjct:   37 GLTPRQYAVLLTVAQNEGLNQTQLVELTGIDRSTLADIIRRMLKKGMLQRRRTRNDARAYSVKITEQGTRILKAHDPLARRVDERILASLAVAQRERFLQDLNAIVQTL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TP59_9HYPH5.220e-5375.44MarR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A101VID2_9PROT2.910e-4971.93MarR family transcriptional regulator n=1 Tax=Alph... [more]
A0A6I3KKW2_9HYPH1.010e-4871.05MarR family transcriptional regulator n=4 Tax=Hyph... [more]
A0A2W4TJ55_9PROT1.480e-4875.23MarR family transcriptional regulator n=1 Tax=Prot... [more]
A0A2S5PBX5_HYPSQ1.670e-4871.68MarR family transcriptional regulator n=2 Tax=Hyph... [more]
A0A2S5MAT9_HYPSQ5.140e-4871.05MarR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A849TQV1_9HYPH2.090e-4771.17MarR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A258L578_9HYPH2.510e-4772.48MarR family transcriptional regulator n=2 Tax=uncl... [more]
A0A2W4LBZ2_9PROT8.460e-4772.22MarR family transcriptional regulator n=1 Tax=Prot... [more]
D8JXD2_HYPDA1.700e-4669.72Transcriptional regulator, MarR family n=4 Tax=Hyp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55998contigP-wetherbeei_contig55998:44..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog582899.Hden_3320
PFAMsMarR,MarR_2
Model size342
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.79e-47
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1RJRY@1224|Proteobacteria,2UA4D@28211|Alphaproteobacteria,3N8VY@45401|Hyphomicrobiaceae
Descriptionhelix_turn_helix multiple antibiotic resistance protein
Cds size342
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.9325988-CDS-P-wetherbeei_contig55998:43..3851683186832.9325988-CDS-P-wetherbeei_contig55998:43..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55998 44..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55998.1.1prot_P-wetherbeei_contig55998.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55998 44..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55998.1.1

>prot_P-wetherbeei_contig55998.1.1 ID=prot_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKG
LIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERE
RFLQDLGKIVRMLG
back to top

mRNA from alignment at P-wetherbeei_contig55998:44..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55998.1.1 ID=mRNA_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig55998:44..385+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGCGGGACTAACGCCGCGCCAATTTGCCGTTCTCGTTACAGT TTCGCAAAACGAGGGGCTCAGCCAGACGAACCTCGTCGATCGCACAGGCA TTGATCGATCAACGCTCGCGGACATTATCCGCCGCATGATCAAGAAGGGC CTCATCCAGCGTCGCCGTACCAAGGAAGATGCCCGTGCCTACGCCGTGCG TCTGACCGAAGAGGGCAATCGCGTCCTGCGTGCCAGCGATCCGCTCGCAC GAAAAGTCGACGACAAGGTTCTTTCGGTGTTGTCGTCCGCAGAGCGAGAG CGTTTCCTGCAGGACCTCGGCAAGATCGTCCGGATGCTGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55998:44..385+

>mRNA_P-wetherbeei_contig55998.1.1 ID=mRNA_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig55998:44..385+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGCGGGACTAACGCCGCGCCAATTTGCCGTTCTCGTTACAGT
TTCGCAAAACGAGGGGCTCAGCCAGACGAACCTCGTCGATCGCACAGGCA
TTGATCGATCAACGCTCGCGGACATTATCCGCCGCATGATCAAGAAGGGC
CTCATCCAGCGTCGCCGTACCAAGGAAGATGCCCGTGCCTACGCCGTGCG
TCTGACCGAAGAGGGCAATCGCGTCCTGCGTGCCAGCGATCCGCTCGCAC
GAAAAGTCGACGACAAGGTTCTTTCGGTGTTGTCGTCCGCAGAGCGAGAG
CGTTTCCTGCAGGACCTCGGCAAGATCGTCCGGATGCTGGGC
back to top