mRNA_P-wetherbeei_contig55998.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A7C4TP59_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TP59_9HYPH) HSP 1 Score: 172 bits (436), Expect = 5.220e-53 Identity = 86/114 (75.44%), Postives = 105/114 (92.11%), Query Frame = 1
Query: 1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
MAD GLTPRQ+AVL TVS NEGLSQTNLV++TGIDRSTLADIIRRM++KGL+ RRRTKEDARAY+V+LT+EG RVL++++PLAR+VDDK+L+ L + +RERFLQDLGKIVR +G
Sbjct: 33 MADGGLTPRQYAVLYTVSHNEGLSQTNLVEKTGIDRSTLADIIRRMLRKGLLARRRTKEDARAYSVKLTDEGWRVLKSAEPLARRVDDKILAALPTQDRERFLQDLGKIVRNIG 146
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A101VID2_9PROT (MarR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VID2_9PROT) HSP 1 Score: 163 bits (412), Expect = 2.910e-49 Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 1
Query: 1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
M LTPRQ+AVLV V++NEGLSQTNLVD TGIDRSTLADIIRRM+KKGL+QRRRTKEDARAYAV+LTE+G R+L A++P+A+KVD+++L L +AERERFL DL IV LG
Sbjct: 33 MRTEDLTPRQYAVLVAVAENEGLSQTNLVDMTGIDRSTLADIIRRMLKKGLVQRRRTKEDARAYAVKLTEDGRRILEAAEPMAKKVDERILQALPAAERERFLSDLSMIVEALG 146
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A6I3KKW2_9HYPH (MarR family transcriptional regulator n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KKW2_9HYPH) HSP 1 Score: 161 bits (408), Expect = 1.010e-48 Identity = 81/114 (71.05%), Postives = 101/114 (88.60%), Query Frame = 1
Query: 1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
M LTPRQ+AVLV VS NEG+SQT LV++TG+DRSTLADI+RRM+KKGL+QRRRTKEDARAY+V+LT+EG +VL+A+DPLAR+VDD++L VL A+RERFLQDL +IV+ LG
Sbjct: 37 MVAGDLTPRQYAVLVAVSLNEGVSQTLLVEKTGVDRSTLADIVRRMLKKGLLQRRRTKEDARAYSVKLTDEGWKVLKAADPLARRVDDRILGVLPGAQRERFLQDLNQIVKALG 150
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2W4TJ55_9PROT (MarR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TJ55_9PROT) HSP 1 Score: 161 bits (407), Expect = 1.480e-48 Identity = 82/109 (75.23%), Postives = 100/109 (91.74%), Query Frame = 1
Query: 7 DAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVR 333
D LTPRQ+A+L+TV+QNEGLSQT+LV+RTGIDRSTLAD+IRRMIKKGL+QRRRT+EDARAYAV+LTEEG RVLR ++PLAR+ D+KVLSVLS +RERFL+ L +I+R
Sbjct: 41 DGELTPRQYAILLTVAQNEGLSQTDLVERTGIDRSTLADVIRRMIKKGLLQRRRTREDARAYAVKLTEEGWRVLRQTEPLARRADEKVLSVLSVVDRERFLKGLREIIR 149
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2S5PBX5_HYPSQ (MarR family transcriptional regulator n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PBX5_HYPSQ) HSP 1 Score: 161 bits (407), Expect = 1.670e-48 Identity = 81/113 (71.68%), Postives = 101/113 (89.38%), Query Frame = 1
Query: 1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
M + LTPRQFAVLVTVSQNEGLSQTNLV++TGIDRSTLADI+RRM+KKGL+QRRRTKEDARAY+V+L++EG R L++++P+AR+VDDKVL+VLS +R+RF+ DL IV L
Sbjct: 38 MGASDLTPRQFAVLVTVSQNEGLSQTNLVEKTGIDRSTLADIVRRMLKKGLLQRRRTKEDARAYSVKLSDEGWRTLKSAEPMARRVDDKVLAVLSGPQRDRFVNDLNTIVEAL 150
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2S5MAT9_HYPSQ (MarR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MAT9_HYPSQ) HSP 1 Score: 159 bits (403), Expect = 5.140e-48 Identity = 81/114 (71.05%), Postives = 100/114 (87.72%), Query Frame = 1
Query: 1 MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
MA LTPRQFAVLVTVSQNEGLSQTNLV++TGIDRSTLAD++RRM+KKGLI+RRRT+ DARAY+V+LT+EG+R+L+ +DPLA +VDD++LS L A RERF+QDL IV +G
Sbjct: 33 MATDSLTPRQFAVLVTVSQNEGLSQTNLVEQTGIDRSTLADVVRRMLKKGLIKRRRTRHDARAYSVKLTDEGSRMLKIADPLADRVDDRILSSLPVARRERFMQDLRAIVHGMG 146
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A849TQV1_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TQV1_9HYPH) HSP 1 Score: 158 bits (399), Expect = 2.090e-47 Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 1
Query: 7 DAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
D LTPRQ+AVL TV+QNEGLSQT LVDRTGIDRSTLADI+RRM+KKGL+QRRRTKEDARAYAV+LTEEG R+LR ++P+AR+VD+++L L + +RE+FL DL IV L
Sbjct: 35 DGDLTPRQYAVLATVAQNEGLSQTGLVDRTGIDRSTLADIVRRMLKKGLLQRRRTKEDARAYAVKLTEEGKRMLRTAEPIARRVDERILEGLQAKQREQFLDDLSTIVTTL 145
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A258L578_9HYPH (MarR family transcriptional regulator n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A258L578_9HYPH) HSP 1 Score: 158 bits (399), Expect = 2.510e-47 Identity = 79/109 (72.48%), Postives = 98/109 (89.91%), Query Frame = 1
Query: 16 LTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRMLG 342
LTPRQ+AVL+TVSQNEGLSQT LV++TGIDRSTLADI+RRM+KKGL+ RRRT+EDARAYAVRLT++G + LR +DP+AR+VD+++LS L +A+RERFL DLG IV LG
Sbjct: 46 LTPRQYAVLLTVSQNEGLSQTQLVEKTGIDRSTLADIVRRMLKKGLLSRRRTREDARAYAVRLTDDGWKSLRTADPVARRVDERILSALPAAQRERFLTDLGTIVTALG 154
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: A0A2W4LBZ2_9PROT (MarR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LBZ2_9PROT) HSP 1 Score: 156 bits (395), Expect = 8.460e-47 Identity = 78/108 (72.22%), Postives = 100/108 (92.59%), Query Frame = 1
Query: 16 LTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
LTPRQFA+LV V+QNEGLSQT+LV++TGIDRSTLAD++RRM+KKGL+QRRRT+EDARAYAV+LTEEG R L+ ++PLAR+ D+K+LS+LS++ERERFL+ L +IVR L
Sbjct: 37 LTPRQFAILVAVAQNEGLSQTDLVEKTGIDRSTLADVVRRMLKKGLLQRRRTREDARAYAVKLTEEGWRTLKRAEPLARRADEKLLSLLSASERERFLKGLMEIVRSL 144
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Match: D8JXD2_HYPDA (Transcriptional regulator, MarR family n=4 Tax=Hyphomicrobium TaxID=81 RepID=D8JXD2_HYPDA) HSP 1 Score: 155 bits (393), Expect = 1.700e-46 Identity = 76/109 (69.72%), Postives = 99/109 (90.83%), Query Frame = 1
Query: 13 GLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGLIQRRRTKEDARAYAVRLTEEGNRVLRASDPLARKVDDKVLSVLSSAERERFLQDLGKIVRML 339
GLTPRQ+AVL+TV+QNEGL+QT LV+ TGIDRSTLADIIRRM+KKG++QRRRT+ DARAY+V++TE+G R+L+A DPLAR+VD+++L+ L+ A+RERFLQDL IV+ L
Sbjct: 37 GLTPRQYAVLLTVAQNEGLNQTQLVELTGIDRSTLADIIRRMLKKGMLQRRRTRNDARAYSVKITEQGTRILKAHDPLARRVDERILASLAVAQRERFLQDLNAIVQTL 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55998.1.1 >prot_P-wetherbeei_contig55998.1.1 ID=prot_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp MADAGLTPRQFAVLVTVSQNEGLSQTNLVDRTGIDRSTLADIIRRMIKKGback to top mRNA from alignment at P-wetherbeei_contig55998:44..385+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55998.1.1 ID=mRNA_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig55998:44..385+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55998:44..385+ >mRNA_P-wetherbeei_contig55998.1.1 ID=mRNA_P-wetherbeei_contig55998.1.1|Name=mRNA_P-wetherbeei_contig55998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig55998:44..385+ (Phaeothamnion wetherbeei SAG_119_79)back to top |