mRNA_P-wetherbeei_contig5596.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5596.1.1
Unique NamemRNA_P-wetherbeei_contig5596.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5596.1.1 vs. uniprot
Match: A0A3C0TS64_9PROT (PEP-CTERM domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS64_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 9.950e-7
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:   64 TSLGGGLFLYDNGDFIDNLLAYAYGTNDDGRTYVNGRLDTNWYVNLHTTISDGNQGALRFGHIRDQWYLVE--SVPEPASMTLLGAGIMGLGYFGKRRK 354
            T+LGGG          D +  Y   T  DG T+     D NWY+          +GA        +W   +  SVPEPAS++LLGAG+MGLGY GKRR+
Sbjct:  203 TALGGG-------QTDDEIFDYLAST--DGFTFRALGDDDNWYI----------RGA--------RWVTADPASVPEPASLSLLGAGVMGLGYIGKRRR 274
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BLAST of mRNA_P-wetherbeei_contig5596.1.1 vs. uniprot
Match: A0A3C0TW55_9PROT (PEP-CTERM domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TW55_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 8.620e-6
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:  280 VPEPASMTLLGAGIMGLGYFGKRRKA 357
            VPEPASMTLLGAGIMGLGY  +RRKA
Sbjct:   94 VPEPASMTLLGAGIMGLGYMARRRKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5596.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3C0TS64_9PROT9.950e-739.39PEP-CTERM domain-containing protein n=1 Tax=Alphap... [more]
A0A3C0TW55_9PROT8.620e-688.46PEP-CTERM domain-containing protein n=1 Tax=Alphap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5596contigP-wetherbeei_contig5596:197..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog404380.Gbem_2872
PFAMsVPEP
Model size360
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.78e-05
EggNOG OGs2DQIT@1|root,33749@2|Bacteria,1N9CN@1224|Proteobacteria
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.517077-CDS-P-wetherbeei_contig5596:196..5561683186832.517077-CDS-P-wetherbeei_contig5596:196..556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5596 197..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5596.1.1prot_P-wetherbeei_contig5596.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5596 197..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5596.1.1

>prot_P-wetherbeei_contig5596.1.1 ID=prot_P-wetherbeei_contig5596.1.1|Name=mRNA_P-wetherbeei_contig5596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
ALDGFQTTTDPLSALDEQGTPTSLGGGLFLYDNGDFIDNLLAYAYGTNDD
GRTYVNGRLDTNWYVNLHTTISDGNQGALRFGHIRDQWYLVESVPEPASM
TLLGAGIMGLGYFGKRRKA*
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mRNA from alignment at P-wetherbeei_contig5596:197..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5596.1.1 ID=mRNA_P-wetherbeei_contig5596.1.1|Name=mRNA_P-wetherbeei_contig5596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig5596:197..556- (Phaeothamnion wetherbeei SAG_119_79)
GCCCTTGATGGATTCCAGACCACGACTGATCCGCTTAGCGCGCTGGATGA
GCAAGGAACCCCCACTTCGCTTGGCGGCGGCCTCTTTCTCTACGATAATG
GTGATTTCATTGACAATCTGCTGGCCTACGCCTACGGCACCAATGATGAT
GGCCGCACCTATGTCAATGGCAGGCTGGATACCAACTGGTACGTGAATCT
GCATACCACCATTTCTGATGGTAATCAGGGCGCACTGAGATTCGGCCACA
TTCGTGACCAATGGTACCTGGTAGAAAGCGTCCCGGAACCCGCCAGCATG
ACCCTGTTGGGCGCGGGCATCATGGGTCTGGGTTATTTCGGCAAGCGCCG
CAAGGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5596:197..556-

>mRNA_P-wetherbeei_contig5596.1.1 ID=mRNA_P-wetherbeei_contig5596.1.1|Name=mRNA_P-wetherbeei_contig5596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig5596:197..556- (Phaeothamnion wetherbeei SAG_119_79)
GCCCTTGATGGATTCCAGACCACGACTGATCCGCTTAGCGCGCTGGATGA
GCAAGGAACCCCCACTTCGCTTGGCGGCGGCCTCTTTCTCTACGATAATG
GTGATTTCATTGACAATCTGCTGGCCTACGCCTACGGCACCAATGATGAT
GGCCGCACCTATGTCAATGGCAGGCTGGATACCAACTGGTACGTGAATCT
GCATACCACCATTTCTGATGGTAATCAGGGCGCACTGAGATTCGGCCACA
TTCGTGACCAATGGTACCTGGTAGAAAGCGTCCCGGAACCCGCCAGCATG
ACCCTGTTGGGCGCGGGCATCATGGGTCTGGGTTATTTCGGCAAGCGCCG
CAAGGCGTAG
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