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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1386 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1212 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186832.365228-UTR-P-wetherbeei_contig5595:1227..1338 | 1683186832.365228-UTR-P-wetherbeei_contig5595:1227..1338 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5595 1228..1338 + |
| 1683186832.4047868-UTR-P-wetherbeei_contig5595:2900..2963 | 1683186832.4047868-UTR-P-wetherbeei_contig5595:2900..2963 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5595 2901..2963 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186832.3846757-CDS-P-wetherbeei_contig5595:1338..1392 | 1683186832.3846757-CDS-P-wetherbeei_contig5595:1338..1392 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5595 1339..1392 + |
| 1683186832.3945246-CDS-P-wetherbeei_contig5595:1742..2900 | 1683186832.3945246-CDS-P-wetherbeei_contig5595:1742..2900 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5595 1743..2900 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5595.2.1 >prot_P-wetherbeei_contig5595.2.1 ID=prot_P-wetherbeei_contig5595.2.1|Name=mRNA_P-wetherbeei_contig5595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=404bp
MEVDSSPLITRRRKRSAQDDADYHKTKRYISEALWRLQLSPNTPATGSDA
ADTDATEMWASDDEGGGNGGSTGGASEGHEERKESEQRPQEPLALSLSSA
EAEEESASPAPCLTIRPAPLSKVDARIEDLIRSSRLSALRLRTGTQPIER
PPSKLALVPYFSASGRNGEGIYDGEGGGGGSGSSSSSDSDRAAQPGWRRR
VSSMTTQGTSSAASSSGGCASKREDADEAMMIIDSDSGDSGMAATAVSPM
AAAEQGLRPNWGPAPLYLQPRPPPPQEPQQLQQQQQRPQQQQQSPFWGTA
LLAAPAAGGGEGVAHASWLVGGGGGGGGDVPPNSMAVAPAAVSGTSVPFP
VAAAAKSFPPPVGEVRGLIMGEMGGAQAAFAGRGGSGATVLPSNSYWAPA
NRP* back to topmRNA from alignment at P-wetherbeei_contig5595:1228..2963+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig5595.2.1 ID=mRNA_P-wetherbeei_contig5595.2.1|Name=mRNA_P-wetherbeei_contig5595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1736bp|location=Sequence derived from alignment at P-wetherbeei_contig5595:1228..2963+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCTCAATCGAGGAGATAAACACCCAGCGAATCGCGCGGAGGACCCC
GACCCACAGACCCACTGACGAGGAGAGCGGAAAACGCGCGCTACGCTTCC
CAACCTGTGCCATGGAGGTGGACTCGAGTCCGTTGATCACGCGTAGGAGA
AAGCGGAGCGCACAGGTATAGTTCGCCATCTCTCAATGTTTCCGTTCTCG
GACTCTTTTCTCGCCTGTGGCAAAAATGTGCCCAAGGTTTTCTCATAAGC
CAAGCAGCAACATTCTTAAAAGACTTGGGGCATTCACCTTCTCTTTGAGC
TCTGGCGAACACGTGCGCACCCATCGGACAAGTCTTTCTGAACCTTCAGC
TCAGCTTTCGCCTCCCGCTGTCACTATCCTCTTTCACTTTGCCTTCTCTT
CTAAAGGATCACACGTGCATGCCCATCGCACATGTCTTAACCTTTTTAAC
TCTGGTTTCGCCTCCGCGTTCCCACTCTCCTCCATTCTCTTTGGCTTCTC
TTGAAAATAATAAAGGACGACGCCGATTATCACAAGACGAAGCGATACAT
TTCGGAGGCCCTCTGGCGGTTGCAGTTGTCGCCGAACACTCCGGCGACCG
GAAGTGACGCCGCCGACACCGACGCGACGGAGATGTGGGCGAGCGACGAT
GAGGGCGGCGGCAACGGCGGCAGCACCGGCGGTGCGTCCGAGGGCCACGA
GGAGCGCAAAGAGTCGGAACAGCGGCCGCAGGAGCCATTGGCATTGTCGC
TGTCATCGGCGGAGGCAGAGGAAGAGAGCGCTTCTCCAGCCCCATGCCTA
ACTATCCGGCCGGCCCCACTAAGCAAGGTCGACGCGCGGATTGAGGACCT
GATCCGGTCGTCTCGGCTTAGTGCGCTGCGCCTCCGCACGGGCACGCAGC
CGATCGAGCGGCCGCCGTCAAAACTAGCGCTGGTCCCATACTTTTCGGCA
AGCGGCAGGAATGGCGAAGGCATCTACGATGGAGAAGGCGGCGGCGGTGG
CAGTGGCAGTAGCAGCAGCAGCGACAGCGACAGGGCGGCGCAGCCGGGTT
GGAGAAGAAGGGTGTCGTCGATGACGACCCAGGGCACCTCGAGCGCCGCC
TCCTCTTCCGGAGGTTGCGCGTCAAAGCGGGAGGACGCCGACGAGGCTAT
GATGATCATCGACTCTGACTCGGGGGACAGCGGCATGGCGGCAACGGCTG
TTTCGCCGATGGCTGCCGCGGAACAGGGCCTGCGACCGAACTGGGGGCCG
GCGCCACTGTACCTCCAGCCCCGGCCGCCACCGCCCCAGGAGCCCCAACA
GCTGCAGCAGCAACAACAGCGACCGCAGCAGCAGCAGCAGTCGCCCTTCT
GGGGGACAGCACTCTTGGCCGCTCCGGCTGCCGGTGGTGGCGAAGGCGTC
GCTCACGCCAGCTGGCTTGTTGGAGGTGGCGGCGGCGGCGGCGGGGACGT
TCCACCTAACAGCATGGCGGTGGCACCGGCTGCTGTTTCGGGCACGTCGG
TTCCCTTTCCGGTGGCGGCGGCAGCCAAATCGTTTCCTCCGCCAGTCGGG
GAAGTGCGGGGGCTCATAATGGGTGAGATGGGCGGCGCCCAGGCTGCCTT
TGCGGGCCGCGGCGGCAGTGGTGCGACCGTGCTGCCGTCTAACTCGTACT
GGGCACCAGCCAACCGTCCATGATTGCAAGAGATGTGGAGAGACCGTGGC
TTGTTGAGGTAGAAGCCGTTAAATAAACGTGAATCG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig5595:1228..2963+ >mRNA_P-wetherbeei_contig5595.2.1 ID=mRNA_P-wetherbeei_contig5595.2.1|Name=mRNA_P-wetherbeei_contig5595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig5595:1228..2963+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGGACTCGAGTCCGTTGATCACGCGTAGGAGAAAGCGGAGCGC
ACAGGACGACGCCGATTATCACAAGACGAAGCGATACATTTCGGAGGCCC
TCTGGCGGTTGCAGTTGTCGCCGAACACTCCGGCGACCGGAAGTGACGCC
GCCGACACCGACGCGACGGAGATGTGGGCGAGCGACGATGAGGGCGGCGG
CAACGGCGGCAGCACCGGCGGTGCGTCCGAGGGCCACGAGGAGCGCAAAG
AGTCGGAACAGCGGCCGCAGGAGCCATTGGCATTGTCGCTGTCATCGGCG
GAGGCAGAGGAAGAGAGCGCTTCTCCAGCCCCATGCCTAACTATCCGGCC
GGCCCCACTAAGCAAGGTCGACGCGCGGATTGAGGACCTGATCCGGTCGT
CTCGGCTTAGTGCGCTGCGCCTCCGCACGGGCACGCAGCCGATCGAGCGG
CCGCCGTCAAAACTAGCGCTGGTCCCATACTTTTCGGCAAGCGGCAGGAA
TGGCGAAGGCATCTACGATGGAGAAGGCGGCGGCGGTGGCAGTGGCAGTA
GCAGCAGCAGCGACAGCGACAGGGCGGCGCAGCCGGGTTGGAGAAGAAGG
GTGTCGTCGATGACGACCCAGGGCACCTCGAGCGCCGCCTCCTCTTCCGG
AGGTTGCGCGTCAAAGCGGGAGGACGCCGACGAGGCTATGATGATCATCG
ACTCTGACTCGGGGGACAGCGGCATGGCGGCAACGGCTGTTTCGCCGATG
GCTGCCGCGGAACAGGGCCTGCGACCGAACTGGGGGCCGGCGCCACTGTA
CCTCCAGCCCCGGCCGCCACCGCCCCAGGAGCCCCAACAGCTGCAGCAGC
AACAACAGCGACCGCAGCAGCAGCAGCAGTCGCCCTTCTGGGGGACAGCA
CTCTTGGCCGCTCCGGCTGCCGGTGGTGGCGAAGGCGTCGCTCACGCCAG
CTGGCTTGTTGGAGGTGGCGGCGGCGGCGGCGGGGACGTTCCACCTAACA
GCATGGCGGTGGCACCGGCTGCTGTTTCGGGCACGTCGGTTCCCTTTCCG
GTGGCGGCGGCAGCCAAATCGTTTCCTCCGCCAGTCGGGGAAGTGCGGGG
GCTCATAATGGGTGAGATGGGCGGCGCCCAGGCTGCCTTTGCGGGCCGCG
GCGGCAGTGGTGCGACCGTGCTGCCGTCTAACTCGTACTGGGCACCAGCC
AACCGTCCATGA back to top
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