mRNA_P-wetherbeei_contig55907.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig55907.1.1
Unique Name	mRNA_P-wetherbeei_contig55907.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A3C0Y6B8_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A3C0Y6B8_9BURK)

HSP 1 Score: 276 bits (707), Expect = 9.860e-85
Identity = 138/173 (79.77%), Postives = 150/173 (86.71%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            L CL+RN YDAVTVDLKLP + G AFISALR  E+TR LP++VISAMAE G+L F+ KPL VSDWL KPIDENLLILSVRRA+AGL SGKPR+LHVEDDPDIQRI  AI QD ADFEFAATLD+ARA L EH FDLVLLDL LG+DSGWDLVA IDALDPRPPV+VFSASDVD
Sbjct:  715 LTCLTRNNYDAVTVDLKLPGQHGAAFISALRGEERTRHLPVVVISAMAEAGRLQFNHKPLTVSDWLEKPIDENLLILSVRRAVAGLHSGKPRILHVEDDPDIQRITEAIVQDFADFEFAATLDQARARLREHRFDLVLLDLALGEDSGWDLVADIDALDPRPPVIVFSASDVD 887

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A1F4HVV6_9BURK (Histidine kinase n=1 Tax=Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 TaxID=1797557 RepID=A0A1F4HVV6_9BURK)

HSP 1 Score: 261 bits (667), Expect = 3.930e-80
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            LA L+RN YDAVTVDLKLP + G AFISALR  E+TR LP+++ISAMAE G+L F+ KPL VSDWL KPIDE+LLILSVRRA+AGL SGKP +LHVEDD DIQRI  AI QD ADFEFAATL++AR  L EH FDLVLLDL LG+DSGWDLVA IDALDPRPPV+VFSASDVD
Sbjct:  540 LAFLARNAYDAVTVDLKLPGQHGAAFISALRGEERTRHLPVVMISAMAEAGRLQFNHKPLTVSDWLEKPIDESLLILSVRRAIAGLHSGKPLILHVEDDLDIQRITEAIVQDFADFEFAATLEQARTRLREHRFDLVLLDLALGEDSGWDLVADIDALDPRPPVIVFSASDVD 712

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A5Q3H7N7_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. Pch-P TaxID=2082385 RepID=A0A5Q3H7N7_9BURK)

HSP 1 Score: 252 bits (644), Expect = 1.670e-75
Identity = 126/173 (72.83%), Postives = 144/173 (83.24%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            LACL+ N YDAVTVDLKLP ++G AFI  LR++E+TR LP++VISAMAE+G+L F+RKP  V+DWL KPIDENLLI S+RRA+A + +GKPR+LHVEDD DIQRI AAIAQD A FEFAATLDEARA L EH FDLVLLDL LG  SGWDL   ID LDPRPPV+VFSA DVD
Sbjct:  749 LACLAGNTYDAVTVDLKLPGQNGAAFIGQLRDDERTRHLPVVVISAMAEQGELQFNRKPYTVTDWLKKPIDENLLINSLRRAVAAMNAGKPRILHVEDDLDIQRITAAIAQDFASFEFAATLDEARARLREHPFDLVLLDLALGSHSGWDLFEDIDNLDPRPPVIVFSAGDVD 921

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A1I7IPN9_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. YR568 TaxID=1855301 RepID=A0A1I7IPN9_9BURK)

HSP 1 Score: 251 bits (640), Expect = 6.070e-75
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            LACL+ N YDAVTVDLKLP ++G+AFI  LR +E+TR LP++VISAMAE+G+L F+RKP  V+DWL KPIDENLLI S++RA+A + +GKPR+LHVEDD DIQRI AAIAQD A FEFAATLDEARA L EH FDLVLLDL LG  SGWDL   ID LDPRPPV+VFSA DVD
Sbjct:  751 LACLATNSYDAVTVDLKLPGQNGVAFIGQLREDERTRNLPVVVISAMAEQGELQFNRKPHTVTDWLKKPIDENLLIHSLQRAVATMNAGKPRILHVEDDLDIQRITAAIAQDFASFEFAATLDEARARLREHPFDLVLLDLALGSHSGWDLFEDIDDLDPRPPVIVFSAGDVD 923

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: J2L0Z2_9BURK (Histidine kinase n=2 Tax=unclassified Polaromonas TaxID=2638319 RepID=J2L0Z2_9BURK)

HSP 1 Score: 251 bits (640), Expect = 6.200e-75
Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            LA L+ N YDAVTVDLKLP ++G++FI  LR +E TR LP++VISAMAE+G+L F+RKP  VSDWL KPIDE+LLI S+RRA+A L+SGKPR+LHVEDD DIQRI AAIAQ+ A FEFAATLDEARALL EH FDLVLLDL LG  SGWDL   IDALDPRPPV+VFSA DV+
Sbjct:  749 LASLASNSYDAVTVDLKLPGQNGVSFIGQLREDESTRNLPVVVISAMAEQGELQFNRKPHTVSDWLKKPIDEHLLIHSLRRAVASLDSGKPRILHVEDDLDIQRITAAIAQEFASFEFAATLDEARALLREHTFDLVLLDLALGSHSGWDLFEDIDALDPRPPVIVFSAGDVE 921

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A258TTB9_9BURK (Histidine kinase (Fragment) n=1 Tax=Polaromonas sp. 28-63-22 TaxID=1970416 RepID=A0A258TTB9_9BURK)

HSP 1 Score: 237 bits (605), Expect = 1.170e-74
Identity = 120/172 (69.77%), Postives = 140/172 (81.40%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDV 516
            LACL  +RYDA+TVDL LP + G AFI ALR + +T+ LP++VISA  +EGQLHF+ KPL +SDWL KPIDE+ LI S+RRA+AGL +GKPRVLHVEDDPDIQ IAAAIA++ A FEFA+TL EARALL +  FDLVLLDLTLG DSGW L   ID L PRPPV+VFSASDV
Sbjct:  167 LACLGSSRYDAITVDLTLPGQQGAAFIGALRRDVRTQGLPVVVISASEDEGQLHFNGKPLAISDWLDKPIDEDRLIASLRRAVAGLANGKPRVLHVEDDPDIQCIAAAIAENYASFEFASTLAEARALLRQQTFDLVLLDLTLGDDSGWSLFEDIDKLRPRPPVIVFSASDV 338

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A1G9T7A3_POLSJ (Histidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) TaxID=296591 RepID=A0A1G9T7A3_POLSJ)

HSP 1 Score: 247 bits (630), Expect = 4.840e-74
Identity = 122/173 (70.52%), Postives = 147/173 (84.97%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            LACL++  YDAVTVDLKLP ++G+AFISALR+NE TR LP++V+SA+AEEG+L F+ KPL VSDWL KPIDE+LL+LSVRRA+AG+++GKPR+LHV+ D DIQRI AA+AQD A+F  AATL EARALL E  FDLVLLDL  GK+S WDLV  IDALDPRPPV+VFS SD +
Sbjct:  647 LACLAQGSYDAVTVDLKLPGQNGIAFISALRDNESTRKLPVVVVSALAEEGRLEFNHKPLTVSDWLQKPIDEDLLVLSVRRAVAGIQAGKPRILHVQADLDIQRIVAAVAQDFANFTSAATLHEARALLREQPFDLVLLDLGPGKESSWDLVEDIDALDPRPPVIVFSPSDTE 819

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A7Y0C2C9_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0C2C9_9BURK)

HSP 1 Score: 247 bits (631), Expect = 4.100e-73
Identity = 124/173 (71.68%), Postives = 142/173 (82.08%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            L CL+  RYDA+TVDLKLP ++GM FI+ LR++EKTR LP++VIS MAEEGQL F RKPL VSDWL KPI+E  LILSVRRA+AGL SG PR+LHVEDD DIQ I AAI +D A+ EFAATL++AR  L EH FDLVLLDL LGKDSGWDL   IDAL+PRPPV+VFSASD D
Sbjct:  913 LVCLAHTRYDAMTVDLKLPGQTGMDFINVLRSDEKTRDLPVVVISVMAEEGQLQFKRKPLTVSDWLKKPINEKQLILSVRRAIAGLPSGNPRILHVEDDIDIQSIVAAIVRDFANVEFAATLEQARTRLREHQFDLVLLDLGLGKDSGWDLFEDIDALNPRPPVIVFSASDDD 1085

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BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: Q12H15_POLSJ (Histidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) TaxID=296591 RepID=Q12H15_POLSJ)

HSP 1 Score: 245 bits (626), Expect = 5.370e-73
Identity = 125/172 (72.67%), Postives = 143/172 (83.14%), Query Frame = 1

Query:    4 ACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDVD 519
            A L+R  YDA+TVDLKLP ++G+AFI ALR  E+TR LP++VISAMA EG+L   RKPL VSDWL KPIDEN L LSVRRA+AGL++ KPR+LHVEDD DIQ IAAAIA++ A FEFAATLDEARA L E  FDLVLLDLTLG DSGWDL   IDALDPRPPV++FS+SDVD
Sbjct:  738 ADLARKDYDAMTVDLKLPGQNGLAFIGALRREERTRHLPVVVISAMAGEGKLQLKRKPLAVSDWLEKPIDENQLTLSVRRAVAGLKNRKPRILHVEDDLDIQHIAAAIAENFATFEFAATLDEARARLREQRFDLVLLDLTLGSDSGWDLFEDIDALDPRPPVILFSSSDVD 909

[Close]

BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Match: A0A258QDZ6_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. 35-63-240 TaxID=1970417 RepID=A0A258QDZ6_9BURK)

HSP 1 Score: 237 bits (605), Expect = 3.760e-70
Identity = 120/172 (69.77%), Postives = 140/172 (81.40%), Query Frame = 1

Query:    1 LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEEGQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDPDIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWDLVAAIDALDPRPPVVVFSASDV 516
            LACL  +RYDA+TVDL LP + G AFI ALR + +T+ LP++VISA  +EGQLHF+ KPL +SDWL KPIDE+ LI S+RRA+AGL +GKPRVLHVEDDPDIQ IAAAIA++ A FEFA+TL EARALL +  FDLVLLDLTLG DSGW L   ID L PRPPV+VFSASDV
Sbjct:  705 LACLGSSRYDAITVDLTLPGQQGAAFIGALRRDVRTQGLPVVVISASEDEGQLHFNGKPLAISDWLDKPIDEDRLIASLRRAVAGLANGKPRVLHVEDDPDIQCIAAAIAENYASFEFASTLAEARALLRQQTFDLVLLDLTLGDDSGWSLFEDIDKLRPRPPVIVFSASDV 876

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig55907.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3C0Y6B8_9BURK	9.860e-85	79.77	Histidine kinase n=1 Tax=Polaromonas sp. TaxID=186...	[more]
A0A1F4HVV6_9BURK	3.930e-80	76.30	Histidine kinase n=1 Tax=Burkholderiales bacterium...	[more]
A0A5Q3H7N7_9BURK	1.670e-75	72.83	Histidine kinase n=1 Tax=Polaromonas sp. Pch-P Tax...	[more]
A0A1I7IPN9_9BURK	6.070e-75	72.25	Histidine kinase n=1 Tax=Polaromonas sp. YR568 Tax...	[more]
J2L0Z2_9BURK	6.200e-75	72.83	Histidine kinase n=2 Tax=unclassified Polaromonas ...	[more]
A0A258TTB9_9BURK	1.170e-74	69.77	Histidine kinase (Fragment) n=1 Tax=Polaromonas sp...	[more]
A0A1G9T7A3_POLSJ	4.840e-74	70.52	Histidine kinase n=1 Tax=Polaromonas sp. (strain J...	[more]
A0A7Y0C2C9_9BURK	4.100e-73	71.68	Histidine kinase n=1 Tax=Polaromonas sp. TaxID=186...	[more]
Q12H15_POLSJ	5.370e-73	72.67	Histidine kinase n=1 Tax=Polaromonas sp. (strain J...	[more]
A0A258QDZ6_9BURK	3.760e-70	69.77	Histidine kinase n=1 Tax=Polaromonas sp. 35-63-240...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig55907	contig	P-wetherbeei_contig55907:1..519 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	296591.Bpro_0212
PFAMs	HATPase_c,HisKA,PAS_4,Response_reg
Model size	519
Max annot lvl	28216\|Betaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	8.81e-74
EggNOG OGs	COG0745@1\|root,COG0784@1\|root,COG5002@1\|root,COG5278@1\|root,COG0745@2\|Bacteria,COG0784@2\|Bacteria,COG5002@2\|Bacteria,COG5278@2\|Bacteria,1NC9X@1224\|Proteobacteria,2WHF9@28216\|Betaproteobacteria
Description	PAS fold
Cds size	519
COG category	T

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186831.9520664-CDS-P-wetherbeei_contig55907:0..519	1683186831.9520664-CDS-P-wetherbeei_contig55907:0..519	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig55907 1..519 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig55907.1.1	prot_P-wetherbeei_contig55907.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig55907 1..519 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig55907:1..519-
coding sequence from alignment at P-wetherbeei_contig55907:1..519-

protein sequence of mRNA_P-wetherbeei_contig55907.1.1

>prot_P-wetherbeei_contig55907.1.1 ID=prot_P-wetherbeei_contig55907.1.1|Name=mRNA_P-wetherbeei_contig55907.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
LACLSRNRYDAVTVDLKLPDRSGMAFISALRNNEKTRTLPILVISAMAEE
GQLHFDRKPLMVSDWLAKPIDENLLILSVRRALAGLESGKPRVLHVEDDP
DIQRIAAAIAQDIADFEFAATLDEARALLGEHHFDLVLLDLTLGKDSGWD
LVAAIDALDPRPPVVVFSASDVD

mRNA from alignment at P-wetherbeei_contig55907:1..519-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig55907.1.1 ID=mRNA_P-wetherbeei_contig55907.1.1|Name=mRNA_P-wetherbeei_contig55907.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55907:1..519- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTTGCCTTTCCCGCAACCGCTACGATGCCGTGACGGTGGATTTAAA
GCTTCCTGACCGGAGCGGCATGGCCTTTATCAGTGCACTGCGCAACAATG
AAAAAACACGCACCCTGCCTATTCTGGTGATCTCGGCCATGGCCGAGGAG
GGGCAACTGCACTTCGACCGTAAGCCGCTCATGGTCTCTGACTGGCTTGC
GAAGCCGATCGATGAAAACTTGTTGATCCTCAGCGTGCGACGGGCCCTGG
CCGGTTTGGAGAGCGGCAAGCCGCGGGTTCTGCATGTGGAAGACGACCCC
GATATCCAGCGCATAGCCGCCGCGATTGCCCAGGATATTGCAGACTTCGA
ATTTGCAGCCACACTGGACGAAGCCCGAGCCCTGCTCGGTGAGCACCATT
TTGACCTGGTGCTGCTGGACCTCACGTTGGGCAAGGACTCGGGCTGGGAC
CTGGTTGCGGCTATCGATGCGCTTGATCCGAGGCCGCCGGTGGTTGTGTT
TTCAGCCAGCGACGTGGAC

Coding sequence (CDS) from alignment at P-wetherbeei_contig55907:1..519-

>mRNA_P-wetherbeei_contig55907.1.1 ID=mRNA_P-wetherbeei_contig55907.1.1|Name=mRNA_P-wetherbeei_contig55907.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55907:1..519- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTTGCCTTTCCCGCAACCGCTACGATGCCGTGACGGTGGATTTAAA
GCTTCCTGACCGGAGCGGCATGGCCTTTATCAGTGCACTGCGCAACAATG
AAAAAACACGCACCCTGCCTATTCTGGTGATCTCGGCCATGGCCGAGGAG
GGGCAACTGCACTTCGACCGTAAGCCGCTCATGGTCTCTGACTGGCTTGC
GAAGCCGATCGATGAAAACTTGTTGATCCTCAGCGTGCGACGGGCCCTGG
CCGGTTTGGAGAGCGGCAAGCCGCGGGTTCTGCATGTGGAAGACGACCCC
GATATCCAGCGCATAGCCGCCGCGATTGCCCAGGATATTGCAGACTTCGA
ATTTGCAGCCACACTGGACGAAGCCCGAGCCCTGCTCGGTGAGCACCATT
TTGACCTGGTGCTGCTGGACCTCACGTTGGGCAAGGACTCGGGCTGGGAC
CTGGTTGCGGCTATCGATGCGCTTGATCCGAGGCCGCCGGTGGTTGTGTT
TTCAGCCAGCGACGTGGAC