mRNA_P-wetherbeei_contig5590.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5590.2.1
Unique NamemRNA_P-wetherbeei_contig5590.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5590.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5590contigP-wetherbeei_contig5590:2463..3553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size905
Hectar predicted targeting categorymitochondrion
Exons2
Cds size894
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.8648448-UTR-P-wetherbeei_contig5590:2462..24721683186831.8648448-UTR-P-wetherbeei_contig5590:2462..2472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5590 2463..2472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.8732734-CDS-P-wetherbeei_contig5590:2472..31081683186831.8732734-CDS-P-wetherbeei_contig5590:2472..3108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5590 2473..3108 +
1683186831.8811183-CDS-P-wetherbeei_contig5590:3295..35531683186831.8811183-CDS-P-wetherbeei_contig5590:3295..3553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5590 3296..3553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5590.2.1prot_P-wetherbeei_contig5590.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5590 2473..3553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5590.2.1

>prot_P-wetherbeei_contig5590.2.1 ID=prot_P-wetherbeei_contig5590.2.1|Name=mRNA_P-wetherbeei_contig5590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp
MGPHAGNLCIKRVQLRSSTPLVPRRVCRLRFGTRELLVPQLNGALTWTSG
KGDPLKFHVAARDLADEPHVFVELMQGAAIVGVGSAPICEIQSGVTSICI
DTSDPAERGTSVLLTTTFEQLRPLPPQSWGGANLAKHGKVRRRAASLNGP
HGDAKGGSASDESAQSQLDGDGSEAAGSEAWTEGDNLSVLTPTVWTTRRE
GWSGRIQICCVEVHDMRPDAPPYDLHPGGNAGDVYVVLRMGWDQVECPVA
GRGGNDPGGLKWPGADCYLGVTEQILDEQLQLEAWRRGRGSNDGGTGG
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mRNA from alignment at P-wetherbeei_contig5590:2463..3553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5590.2.1 ID=mRNA_P-wetherbeei_contig5590.2.1|Name=mRNA_P-wetherbeei_contig5590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1091bp|location=Sequence derived from alignment at P-wetherbeei_contig5590:2463..3553+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAGCGGACATGGGGCCGCACGCAGGCAACCTGTGCATCAAGCGCGTTC
AGCTGCGTTCCTCCACCCCGTTGGTGCCGCGGCGAGTCTGTCGTTTGCGC
TTTGGAACGAGGGAACTTCTCGTGCCTCAATTGAATGGCGCACTGACCTG
GACGTCGGGCAAAGGCGACCCGCTGAAGTTTCATGTCGCCGCGAGAGACC
TCGCCGACGAGCCTCATGTCTTCGTGGAACTTATGCAAGGAGCTGCGATC
GTGGGCGTGGGCAGCGCACCCATTTGCGAGATTCAGTCCGGAGTGACATC
GATATGCATCGATACCAGCGATCCAGCAGAGAGAGGCACGTCCGTTCTGC
TTACGACCACATTCGAGCAGCTGCGCCCGCTGCCTCCGCAGTCCTGGGGC
GGCGCCAACCTCGCCAAGCATGGCAAGGTTCGCCGAAGGGCAGCTTCACT
GAACGGTCCGCACGGCGACGCGAAAGGCGGCAGCGCAAGCGACGAGAGCG
CGCAGTCGCAACTCGATGGAGACGGCTCGGAGGCGGCGGGCAGCGAAGCA
TGGACCGAAGGGGACAACCTCAGCGTGCTCACGCCGACCGTGTGGACGAC
TCGGCGGGAGGGATGGAGCGGCCGCATTCAAATTTGCTGTGTGGAGGTGA
GTGGTACTTGAAAGCAGTTGGCCTTTGGATCTAGCTGTGTTTTATGTTGC
GCGCAAGAACCAATTTGAAGGCGGCTATACACTTTCAGGGTTGGAGTTTT
TTATCTTTTCCCGTCACGACTCTTTGCAAGCGTGGTTTCCGGAGGCTACA
TTGCCCGACTACCGGTATCCGCATTCGCCACAGGTCCACGACATGCGGCC
AGACGCGCCGCCCTATGATTTGCATCCCGGCGGTAACGCCGGCGATGTCT
ACGTGGTGCTGCGCATGGGATGGGACCAAGTGGAGTGTCCTGTCGCCGGC
CGCGGCGGCAACGACCCTGGCGGGCTGAAATGGCCCGGCGCCGACTGCTA
TCTGGGCGTCACCGAGCAAATTCTGGACGAGCAGCTGCAGCTGGAGGCGT
GGCGGCGCGGCCGCGGCAGCAACGACGGCGGCACTGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5590:2463..3553+

>mRNA_P-wetherbeei_contig5590.2.1 ID=mRNA_P-wetherbeei_contig5590.2.1|Name=mRNA_P-wetherbeei_contig5590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig5590:2463..3553+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCGCACGCAGGCAACCTGTGCATCAAGCGCGTTCAGCTGCGTTC
CTCCACCCCGTTGGTGCCGCGGCGAGTCTGTCGTTTGCGCTTTGGAACGA
GGGAACTTCTCGTGCCTCAATTGAATGGCGCACTGACCTGGACGTCGGGC
AAAGGCGACCCGCTGAAGTTTCATGTCGCCGCGAGAGACCTCGCCGACGA
GCCTCATGTCTTCGTGGAACTTATGCAAGGAGCTGCGATCGTGGGCGTGG
GCAGCGCACCCATTTGCGAGATTCAGTCCGGAGTGACATCGATATGCATC
GATACCAGCGATCCAGCAGAGAGAGGCACGTCCGTTCTGCTTACGACCAC
ATTCGAGCAGCTGCGCCCGCTGCCTCCGCAGTCCTGGGGCGGCGCCAACC
TCGCCAAGCATGGCAAGGTTCGCCGAAGGGCAGCTTCACTGAACGGTCCG
CACGGCGACGCGAAAGGCGGCAGCGCAAGCGACGAGAGCGCGCAGTCGCA
ACTCGATGGAGACGGCTCGGAGGCGGCGGGCAGCGAAGCATGGACCGAAG
GGGACAACCTCAGCGTGCTCACGCCGACCGTGTGGACGACTCGGCGGGAG
GGATGGAGCGGCCGCATTCAAATTTGCTGTGTGGAGGTCCACGACATGCG
GCCAGACGCGCCGCCCTATGATTTGCATCCCGGCGGTAACGCCGGCGATG
TCTACGTGGTGCTGCGCATGGGATGGGACCAAGTGGAGTGTCCTGTCGCC
GGCCGCGGCGGCAACGACCCTGGCGGGCTGAAATGGCCCGGCGCCGACTG
CTATCTGGGCGTCACCGAGCAAATTCTGGACGAGCAGCTGCAGCTGGAGG
CGTGGCGGCGCGGCCGCGGCAGCAACGACGGCGGCACTGGCGGC
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