mRNA_P-wetherbeei_contig559.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig559.3.1
Unique NamemRNA_P-wetherbeei_contig559.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: H8FTH5_MAGML (3-deoxy-manno-octulosonate cytidylyltransferase n=3 Tax=Magnetospirillum TaxID=13134 RepID=H8FTH5_MAGML)

HSP 1 Score: 312 bits (799), Expect = 1.120e-104
Identity = 162/244 (66.39%), Postives = 192/244 (78.69%), Query Frame = 1
Query:    7 PIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            P+I+IPAR+ ATRLP KPLADIHG+PMIVHVWRRA+E+  G VLVAAGE EI + + A GGEAVLT+ +  +GSDR  +AV+R DP   H  ++NLQGDLPT+ PA +G VL PLA+P VD+ATLV EITRPEE  DPNVVKAV+     QT    I  ALYFSR +VP+ +GPLYHH+G+YAYRR AL RFV LP  VLE+RE+LEQLRA+E GM+I AA VD+VPLGVDTPADLERAR  LA
Sbjct:    6 PLIVIPARLHATRLPGKPLADIHGEPMIVHVWRRAVEAGLGPVLVAAGEPEIAEAVRAHGGEAVLTNPDHPSGSDRAWEAVQRFDPNGRHQSIVNLQGDLPTLDPALVGAVLAPLAEPQVDLATLVVEITRPEERTDPNVVKAVVGLAPGQT----IGRALYFSRASVPANDGPLYHHLGIYAYRREALARFVALPPGVLERREKLEQLRALENGMRIDAALVDTVPLGVDTPADLERARLLLA 245          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A5J6MCU3_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6MCU3_9PROT)

HSP 1 Score: 308 bits (789), Expect = 6.210e-103
Identity = 164/246 (66.67%), Postives = 191/246 (77.64%), Query Frame = 1
Query:    4 NPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVK-QTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            NPII+IPARM +TRLP KPLADIHG PMIVHVWRRA E+  G V+VAA E EIV  + AAGG AVLT  +  +GSDRI +A+   DP + HD V+N+QGDLPT  PA +  VL PL DPAVDI TL TEIT P E  +PNV KAV +FP + Q+G   IA ALYFSR  VPSG+GPLYHHIG+YAYRR+ALERFV LP   LE+RE+LEQLRA+EAGM+I  A VD++PLGVDTPADLE+ARA LA
Sbjct:    5 NPIIMIPARMASTRLPGKPLADIHGAPMIVHVWRRAREAGLGPVVVAAAEPEIVAAVEAAGGRAVLTRPDHPSGSDRIHEALGLADPDRRHDVVVNMQGDLPTFDPALLAAVLAPLEDPAVDIGTLATEITEPSERTNPNVTKAVAAFPERGQSGKPPIARALYFSRATVPSGDGPLYHHIGIYAYRRAALERFVALPPGRLEQREKLEQLRALEAGMRIDLALVDTLPLGVDTPADLEKARALLA 250          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A3C1FL54_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FL54_9PROT)

HSP 1 Score: 307 bits (786), Expect = 1.100e-102
Identity = 163/246 (66.26%), Postives = 193/246 (78.46%), Query Frame = 1
Query:    1 RNPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            +NPII+IPAR+ +TRLP+KPLA+I G+PMIV VWRRA+ES  GRV+VAA E +IV+ + AAGGEAVLTD +L +GSDRI  A+  LDP   HD +INLQGDLPTI PADI  VL PLAD AVDIATL TEITR EE  +PNVVKAV++      G  +   ALYF+R   P G+GPLYHHIG+YAYRR+AL RFV LP S LE RE+LEQLRA+EAGM+I  A +D++PLGVDTPADLERAR  LA
Sbjct:    4 KNPIILIPARLASTRLPDKPLAEIAGKPMIVQVWRRAMESGVGRVVVAAAEAQIVEAVTAAGGEAVLTDPDLPSGSDRIWAALCGLDPDGRHDSIINLQGDLPTIAPADIQAVLRPLADHAVDIATLATEITRAEERDNPNVVKAVIAQHASARGGQQTGRALYFTRATAPFGDGPLYHHIGIYAYRRAALARFVGLPPSPLELREKLEQLRALEAGMRIDVACIDTLPLGVDTPADLERARQLLA 249          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A0B4Y595_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=32 Tax=Thalassospiraceae TaxID=2844866 RepID=A0A0B4Y595_9PROT)

HSP 1 Score: 303 bits (776), Expect = 3.290e-101
Identity = 158/245 (64.49%), Postives = 189/245 (77.14%), Query Frame = 1
Query:    1 RNPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAAL 735
            RNP+++IPARM +TRLPNKPLADIHG+PMIVHVWRRA E+  G V+VA  E+EI D + AAGG AVLTD +L +GSDR+ QA++  DP  ++D V+N+QGDLPTI  ADI  V  PL DP VDIATL  EITR EE  +PNVVKAV +F     G  R+A ALYF+R   P G+GPLYHHIG+Y YRR+AL+RFV+LP + LEKRE+LEQLRA+E GM IA A V+ VPLGVDTP DLERAR  L
Sbjct:    5 RNPVVVIPARMASTRLPNKPLADIHGEPMIVHVWRRATEAGIGPVIVACAEKEIADAVTAAGGIAVLTDPDLPSGSDRVHQALQSFDPDGKYDAVVNVQGDLPTIDAADIRAVFEPLVDPNVDIATLAAEITRQEERTNPNVVKAVAAF-----GADRVARALYFTRATAPYGDGPLYHHIGLYTYRRAALDRFVSLPPAELEKREKLEQLRALENGMVIAVALVNGVPLGVDTPEDLERARLVL 244          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A367VUA9_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=5 Tax=Thalassospira TaxID=168934 RepID=A0A367VUA9_9PROT)

HSP 1 Score: 303 bits (776), Expect = 3.290e-101
Identity = 161/245 (65.71%), Postives = 189/245 (77.14%), Query Frame = 1
Query:    1 RNPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAAL 735
            RNP+++IPARM + RLPNKPLADI G+PMIV VWRRA+E++ G VLVA  EQEIVDVI AAGG AVLTD +L +GSDR+ QA++  DP   +D V+N+QGDLPTI P DI  V  PL DP VDIATL  EI R EE H+PNVVKAV++F  +     R+A ALYF+R   P G+GPLYHHIG+Y YRR+AL+RFV LP + LEKRERLEQLRA+E GM IA A VD VPLGVDTP DLERAR  L
Sbjct:    5 RNPVVVIPARMASMRLPNKPLADICGEPMIVQVWRRAMEAEIGPVLVACAEQEIVDVIEAAGGIAVLTDPDLPSGSDRVHQALQTFDPDGTYDAVVNVQGDLPTISPDDIRAVFEPLNDPMVDIATLAAEIKREEERHNPNVVKAVVAFNGQ-----RVARALYFTRATAPFGDGPLYHHIGLYTYRRAALDRFVALPPAELEKRERLEQLRALENGMVIAVALVDGVPLGVDTPEDLERARLVL 244          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A522VT19_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A522VT19_9PROT)

HSP 1 Score: 302 bits (774), Expect = 6.400e-101
Identity = 162/245 (66.12%), Postives = 190/245 (77.55%), Query Frame = 1
Query:    4 NPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            NPII+IPAR+ ATRLPNKPLADIHG PMIVHVW+RA+E+  G V+VAA E EI + +  AGG AVLTD +L +GSDR+  A+  +DP+  HD V+NLQGDLP I P  I   LLPLA+PAVDIATLV+EI   EE  DPNVVKAVL+F    +    +A ALYFSR AVPSG GP +HHIG+YAYRR+AL RFV LP  +LE RE+LEQLRA+E GM+I AA VD+VP GVDTPADLERARA LA
Sbjct:    3 NPIIVIPARLKATRLPNKPLADIHGLPMIVHVWKRAMEAGIGPVVVAAAEPEIAEAVTGAGGWAVLTDPDLPSGSDRVWAALNAIDPQGGHDVVVNLQGDLPAIDPKVIAASLLPLAEPAVDIATLVSEIKSEEERDDPNVVKAVLAFAPGTS----VARALYFSRNAVPSGAGPHWHHIGIYAYRRAALTRFVDLPVGLLEAREKLEQLRALENGMRIDAALVDTVPFGVDTPADLERARALLA 243          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A2N3KGP5_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=5 Tax=Thalassospira TaxID=168934 RepID=A0A2N3KGP5_9PROT)

HSP 1 Score: 301 bits (772), Expect = 1.430e-100
Identity = 156/246 (63.41%), Postives = 189/246 (76.83%), Query Frame = 1
Query:    1 RNPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            RNP+++IPARM +TRLPNKPLADIHG+PMIVHVWRRA+E++ G V+VA  E EI   +  AGG AVLTD +L +GSDR+ QA+   DP ++HD V+N+QGDLPTI  ADI  V  PL+DPAVDIATL   I R EE ++PNVVKAV +F     G +R+A ALYF+R   P G+GPLYHHIG+Y YRR+AL+RFV+LP + LE RE+LEQLRA+E GM IA A VD VPLGVDT  DLERAR  LA
Sbjct:    5 RNPVVVIPARMASTRLPNKPLADIHGEPMIVHVWRRAVEAEIGPVIVACAEPEIASAVEKAGGIAVLTDPDLPSGSDRVHQALASFDPHKKHDAVVNVQGDLPTIDAADIRAVFNPLSDPAVDIATLAAVIRREEERNNPNVVKAVAAF-----GSLRVARALYFTRATAPYGDGPLYHHIGLYTYRRAALDRFVSLPPAELETREKLEQLRALENGMVIAVALVDGVPLGVDTAEDLERAREILA 245          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A7X2FWJ8_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWJ8_9PROT)

HSP 1 Score: 300 bits (769), Expect = 4.080e-100
Identity = 151/244 (61.89%), Postives = 187/244 (76.64%), Query Frame = 1
Query:    4 NPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAAL 735
            NP++IIPARM + RLP KPLADIHG+PMI+HV  RA+E+  GRV++A  EQE+ D +LAAGGEAV+TD +L +GSDR+ QA+K +DP  +HD ++NLQGDLPTI PA     + PL DP++DI T+  EITRPEE  +PNVVKA+      QT    +A ALYF+R   PSG+GPLYHHIG+YAYRR+ALERFV+L   VLE+RERLEQLRA+EAGM +    V + PLGVDTP DLERAR AL
Sbjct:    6 NPVVIIPARMASQRLPGKPLADIHGRPMILHVRDRALEADIGRVVIACSEQEVADAVLAAGGEAVMTDPDLPSGSDRVFQALKEIDPDGQHDIIVNLQGDLPTIEPATTRAAVRPLDDPSIDIGTVAVEITRPEERTNPNVVKAIAGLEDGQT----VARALYFTRATAPSGDGPLYHHIGIYAYRRAALERFVSLKPGVLERRERLEQLRALEAGMSLGLTLVKAAPLGVDTPEDLERARDAL 245          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A3N1LPC2_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1LPC2_9PROT)

HSP 1 Score: 300 bits (767), Expect = 9.100e-100
Identity = 158/245 (64.49%), Postives = 189/245 (77.14%), Query Frame = 1
Query:    4 NPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA 738
            +PI++IPAR+ ATRLP+KPLADIHG+PMIVHVWRRA+E+  G VLVAAG+Q IVD I  AGG AVLTD +L  GSDR+  A++  DP   +D +IN+QGDLPTI PA +   L PLADPAVDI TL   ITRPEE  +PNVVKA+ +F   +     +A ALYF+R   P G+GPLYHHIG+YA+RR ALERFV LPQ +LE+RE LEQLRA+EAGM+I  A VD+VPLGVDT  DLERARA LA
Sbjct:    6 HPIVVIPARLAATRLPDKPLADIHGEPMIVHVWRRAMEAGTGPVLVAAGDQPIVDAIERAGGHAVLTDPDLPRGSDRVWAALQAFDPAGRYDAIINVQGDLPTIDPALVRRSLDPLADPAVDITTLAAVITRPEERANPNVVKAIAAFADDRP----VARALYFTRVTAPFGDGPLYHHIGLYAFRRRALERFVALPQGILERRESLEQLRALEAGMRIDVALVDTVPLGVDTAEDLERARAILA 246          
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Match: A0A5C7NR81_9PROT (3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NR81_9PROT)

HSP 1 Score: 300 bits (767), Expect = 1.080e-99
Identity = 158/244 (64.75%), Postives = 192/244 (78.69%), Query Frame = 1
Query:    4 NPIIIIPARMGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILAAGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADIGTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIANALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQLRAMEAGMKIAAAYVDSVPLGVDTPADLERARAAL 735
            +PI++IPAR+G+TRLP+KPLADI GQPMIV VWRRA+E++ G V VAA E  IV+ + AAGG+AVLTD +  +GSDRI +A+  +DP   HD V+N+QGDLPTI PA I   L+PL DP+VDIATL   ITR EE HDPNVVKAV +F   +     +A ALYFSR+ VP+ EGP YHHIG+YAYRRSAL +FV LP  VLE+RE+LEQLRA+EAGM+I  A VD++PLGVDTPADLERARA L
Sbjct:    5 SPIVLIPARLGSTRLPDKPLADIDGQPMIVQVWRRAMEAEIGPVYVAAAEPAIVEAVRAAGGQAVLTDPDHPSGSDRIFEALGHIDPVGRHDVVVNVQGDLPTIDPALIRRSLVPLEDPSVDIATLAVSITREEERHDPNVVKAVAAFAPGRD----VARALYFSRSTVPANEGPHYHHIGLYAYRRSALTQFVALPPGVLERREKLEQLRALEAGMRIDVALVDTLPLGVDTPADLERARAIL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig559.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H8FTH5_MAGML1.120e-10466.393-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A5J6MCU3_9PROT6.210e-10366.673-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A3C1FL54_9PROT1.100e-10266.263-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A0B4Y595_9PROT3.290e-10164.493-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A367VUA9_9PROT3.290e-10165.713-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A522VT19_9PROT6.400e-10166.123-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A2N3KGP5_9PROT1.430e-10063.413-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A7X2FWJ8_9PROT4.080e-10061.893-deoxy-manno-octulosonate cytidylyltransferase n=... [more]
A0A3N1LPC2_9PROT9.100e-10064.493-deoxy-manno-octulosonate cytidylyltransferase (C... [more]
A0A5C7NR81_9PROT1.080e-9964.753-deoxy-manno-octulosonate cytidylyltransferase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig559contigP-wetherbeei_contig559:1661..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1150626.PHAMO_280197
Preferred namekdsB
PFAMsCTP_transf_3
Model size741
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00152,RC00910
KEGG koko:K00979
KEGG ReactionR03351,R11396
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00063
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-100
EggNOG OGsCOG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2TUQM@28211|Alphaproteobacteria,2JPST@204441|Rhodospirillales
EC2.7.7.38
DescriptionActivates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Cds size711
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.590267-UTR-P-wetherbeei_contig559:1660..16901683186831.590267-UTR-P-wetherbeei_contig559:1660..1690Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig559 1661..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.6038098-CDS-P-wetherbeei_contig559:1690..24011683186831.6038098-CDS-P-wetherbeei_contig559:1690..2401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig559 1691..2401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig559.3.1prot_P-wetherbeei_contig559.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig559 1691..2401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig559.3.1

>prot_P-wetherbeei_contig559.3.1 ID=prot_P-wetherbeei_contig559.3.1|Name=mRNA_P-wetherbeei_contig559.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MGATRLPNKPLADIHGQPMIVHVWRRAIESKAGRVLVAAGEQEIVDVILA
AGGEAVLTDRELTTGSDRIAQAVKRLDPRQEHDFVINLQGDLPTIPPADI
GTVLLPLADPAVDIATLVTEITRPEEVHDPNVVKAVLSFPVKQTGPVRIA
NALYFSRTAVPSGEGPLYHHIGVYAYRRSALERFVTLPQSVLEKRERLEQ
LRAMEAGMKIAAAYVDSVPLGVDTPADLERARAALA*
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mRNA from alignment at P-wetherbeei_contig559:1661..2401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig559.3.1 ID=mRNA_P-wetherbeei_contig559.3.1|Name=mRNA_P-wetherbeei_contig559.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig559:1661..2401+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAATCCGATCATTATTATTCCCGCCCGTATGGGGGCCACACGGCTGCC CAATAAGCCGCTGGCCGATATTCATGGCCAGCCCATGATTGTGCATGTCT GGCGCAGGGCAATCGAATCGAAAGCCGGGCGGGTGCTGGTCGCGGCGGGC GAACAGGAAATCGTTGATGTGATCCTTGCGGCAGGCGGCGAGGCGGTGCT GACCGATCGTGAACTTACCACCGGGTCTGACCGGATTGCGCAGGCGGTAA AACGGCTGGACCCGCGTCAGGAACATGATTTTGTGATCAATCTGCAGGGC GATCTGCCCACTATTCCGCCCGCTGATATCGGGACTGTGCTGCTGCCACT GGCCGACCCGGCGGTGGATATTGCGACGCTGGTGACCGAAATTACCCGGC CCGAAGAAGTCCATGATCCCAATGTGGTGAAAGCGGTGCTTTCATTTCCG GTGAAACAGACCGGCCCGGTACGTATTGCCAATGCGCTGTATTTCAGCCG CACCGCCGTTCCATCAGGCGAAGGGCCGCTGTATCATCATATTGGCGTTT ATGCGTACCGGCGTTCCGCGCTGGAACGCTTCGTTACGCTGCCACAATCG GTGCTGGAAAAACGTGAAAGGCTGGAACAATTGCGCGCCATGGAAGCTGG TATGAAGATCGCCGCCGCCTATGTGGACAGTGTGCCGCTGGGTGTCGATA CCCCGGCCGATCTTGAACGCGCCCGTGCGGCGCTGGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig559:1661..2401+

>mRNA_P-wetherbeei_contig559.3.1 ID=mRNA_P-wetherbeei_contig559.3.1|Name=mRNA_P-wetherbeei_contig559.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig559:1661..2401+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCCACACGGCTGCCCAATAAGCCGCTGGCCGATATTCATGGCCA
GCCCATGATTGTGCATGTCTGGCGCAGGGCAATCGAATCGAAAGCCGGGC
GGGTGCTGGTCGCGGCGGGCGAACAGGAAATCGTTGATGTGATCCTTGCG
GCAGGCGGCGAGGCGGTGCTGACCGATCGTGAACTTACCACCGGGTCTGA
CCGGATTGCGCAGGCGGTAAAACGGCTGGACCCGCGTCAGGAACATGATT
TTGTGATCAATCTGCAGGGCGATCTGCCCACTATTCCGCCCGCTGATATC
GGGACTGTGCTGCTGCCACTGGCCGACCCGGCGGTGGATATTGCGACGCT
GGTGACCGAAATTACCCGGCCCGAAGAAGTCCATGATCCCAATGTGGTGA
AAGCGGTGCTTTCATTTCCGGTGAAACAGACCGGCCCGGTACGTATTGCC
AATGCGCTGTATTTCAGCCGCACCGCCGTTCCATCAGGCGAAGGGCCGCT
GTATCATCATATTGGCGTTTATGCGTACCGGCGTTCCGCGCTGGAACGCT
TCGTTACGCTGCCACAATCGGTGCTGGAAAAACGTGAAAGGCTGGAACAA
TTGCGCGCCATGGAAGCTGGTATGAAGATCGCCGCCGCCTATGTGGACAG
TGTGCCGCTGGGTGTCGATACCCCGGCCGATCTTGAACGCGCCCGTGCGG
CGCTGGCGTAA
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