mRNA_P-wetherbeei_contig559.10.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig559.10.1
Unique NamemRNA_P-wetherbeei_contig559.10.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A1F3A646_9PROT (Peptidyl-tRNA hydrolase n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 TaxID=1797224 RepID=A0A1F3A646_9PROT)

HSP 1 Score: 228 bits (582), Expect = 1.520e-73
Identity = 110/153 (71.90%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLLLVGLGNPG+KY R+RHN G MAVDAIA  +R  APR++FQG  R+G IAGEK + LKP TFMN SGQSVG AMRFFKL PADVVVFHDELDLA GK++ K GGGN GHNGLRSID HIG E+RR RIGIGHPG+K  VT +VL DF   +
Sbjct:    1 MLLLVGLGNPGEKYRRHRHNVGFMAVDAIAGAHRFGAPRNKFQGEMREGEIAGEKAIVLKPQTFMNDSGQSVGAAMRFFKLAPADVVVFHDELDLAAGKIKAKLGGGNAGHNGLRSIDEHIGAEFRRVRIGIGHPGDKARVTGHVLGDFAKSD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A351T2D6_9PROT (Peptidyl-tRNA hydrolase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T2D6_9PROT)

HSP 1 Score: 224 bits (572), Expect = 2.310e-72
Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLL+VGLGNPG KY+ NRHN G MAVDAIA  +  ++ R RFQG+  DGLIAG KVV LKP TFMN SG++VG+A RFF+L+ ADV+VFHDELDLAPGKLRVK GGG  GHNGL+SI AH+G ++RR RIGIGHPG+KD V+PYVL DF+  +
Sbjct:    1 MLLMVGLGNPGPKYAHNRHNVGCMAVDAIARQFLFSSERKRFQGLCSDGLIAGRKVVLLKPETFMNESGRAVGEAARFFRLSEADVIVFHDELDLAPGKLRVKRGGGTAGHNGLKSIGAHLGRDFRRVRIGIGHPGHKDAVSPYVLGDFSKAD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A1T4NXA4_9HYPH (Peptidyl-tRNA hydrolase n=1 Tax=Consotaella salsifontis TaxID=1365950 RepID=A0A1T4NXA4_9HYPH)

HSP 1 Score: 225 bits (573), Expect = 6.730e-72
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLL+ GLGNPG +Y+ NRHN G MAVD IA  +R      +FQ    DG IAGEKV+ +KPATFMN SGQ+VG+A RF+KLTPADVVV HDELDL PGK+RVK GGGNGGHNGL+SIDAH+G +YRR RIGIGHPG KDLV+PYVLSDF   +
Sbjct:    1 MLLITGLGNPGSRYAANRHNVGFMAVDEIARAHRFGPWTKKFQAEIADGTIAGEKVLLMKPATFMNNSGQAVGEAARFYKLTPADVVVIHDELDLVPGKVRVKAGGGNGGHNGLKSIDAHLGKDYRRVRIGIGHPGVKDLVSPYVLSDFAKAD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A512DRA8_9PROT (Peptidyl-tRNA hydrolase n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DRA8_9PROT)

HSP 1 Score: 221 bits (564), Expect = 2.050e-71
Identity = 106/153 (69.28%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLLLVGLGNPG +Y+RNRHN G MAVD I   +     R RFQG + DG +  EKV+ LKP TFMN+SGQSVG+AMRFFKLTP DV+V HD+LDLAPGK+RVK GGG+GGHNGLRSID HIG +Y R R+GIGHPGNKDLV  YVL DF+  E
Sbjct:    1 MLLLVGLGNPGSEYARNRHNIGFMAVDEIVRRHGFGPWRRRFQGQSCDGSVESEKVLALKPQTFMNVSGQSVGEAMRFFKLTPPDVIVIHDDLDLAPGKVRVKQGGGHGGHNGLRSIDDHIGKDYWRIRLGIGHPGNKDLVHGYVLHDFSKTE 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: UPI0015D4F126 (aminoacyl-tRNA hydrolase n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4F126)

HSP 1 Score: 220 bits (561), Expect = 6.670e-71
Identity = 104/153 (67.97%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLLLVGLGNPG +Y+RNRHN G MAV+ IA  +  +  R RFQG T +G +AG+KV+ L+P TFMNLSGQSVG A++FFKLTP  VVVFHDELDL PG++RVK GGG+GGHNGLRSIDAHIG +Y R R+GIGHPG+K+LVT YVL DF   +
Sbjct:    1 MLLLVGLGNPGNEYARNRHNIGFMAVEEIARRHGFSPWRRRFQGTTAEGTVAGDKVLALEPLTFMNLSGQSVGAALQFFKLTPDRVVVFHDELDLPPGRIRVKKGGGHGGHNGLRSIDAHIGKDYWRVRLGIGHPGDKNLVTGYVLHDFAKSD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A098TAJ8_9HYPH (Peptidyl-tRNA hydrolase n=1 Tax=Hoeflea sp. BAL378 TaxID=1547437 RepID=A0A098TAJ8_9HYPH)

HSP 1 Score: 222 bits (566), Expect = 7.300e-71
Identity = 100/153 (65.36%), Postives = 125/153 (81.70%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLL+ GLGNPG +Y+RNRHN G MA DAIA  +  +    +F+G   +G IAGEKV+ LKP TFMNLSG SVG+A+RF+KL+P+D++V HDELD+APGKL++KTGGGNGGHNGL+SIDAH+G +YRR RIGIGHPG+KD V+PYVL DF   +
Sbjct:    1 MLLIAGLGNPGPQYARNRHNVGFMAADAIARRHSFSGFSKKFRGEIAEGTIAGEKVLLLKPMTFMNLSGDSVGEALRFYKLSPSDLIVIHDELDIAPGKLKLKTGGGNGGHNGLKSIDAHVGKDYRRLRIGIGHPGHKDRVSPYVLGDFAKAD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A1X7Q3H8_AZOLI (Peptidyl-tRNA hydrolase n=3 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q3H8_AZOLI)

HSP 1 Score: 220 bits (560), Expect = 9.160e-71
Identity = 104/153 (67.97%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLLLVGLGNPG +Y+RNRHN G MA +AIA  Y  +  R RFQGVT +G +AG+KV+ L+P TFMNLSGQSV  A++FFKL P +VVV HDELDL PG++RVK GGG+GGHNGLRSID+HIG EY R R+GIGHPGNKDLV+ YVL DF   +
Sbjct:    1 MLLLVGLGNPGSEYARNRHNIGFMAAEAIARRYNFSPWRKRFQGVTAEGTVAGDKVLALEPGTFMNLSGQSVVAALQFFKLKPENVVVIHDELDLPPGRIRVKKGGGHGGHNGLRSIDSHIGKEYWRIRLGIGHPGNKDLVSGYVLHDFAKAD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: UPI001AE4DB84 (aminoacyl-tRNA hydrolase n=1 Tax=Azospirillum agricola TaxID=1720247 RepID=UPI001AE4DB84)

HSP 1 Score: 220 bits (560), Expect = 9.160e-71
Identity = 104/153 (67.97%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            MLLLVGLGNPG +Y+RNRHN G MA +AIA  Y  +  R RFQGVT +G +AG+KV+ L+P TFMNLSGQSV  A++FFKL P +VVV HDELDL PGK+RVK GGG+GGHNGLRSID+HIG +Y R R+GIGHPGNKDLV+ YVL DF   +
Sbjct:    1 MLLLVGLGNPGSEYARNRHNIGFMAAEAIARRYNFSPWRKRFQGVTAEGTVAGDKVLALEPGTFMNLSGQSVVAALQFFKLKPENVVVIHDELDLPPGKMRVKKGGGHGGHNGLRSIDSHIGKDYWRIRLGIGHPGNKDLVSGYVLHDFAKAD 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A2N3E6W4_9PROT (Peptidyl-tRNA hydrolase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3E6W4_9PROT)

HSP 1 Score: 220 bits (560), Expect = 1.500e-70
Identity = 102/153 (66.67%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            M+LLVGLGNPG+KY+RNRHN G MA DAI   +  AAPR RFQG+  +G + GEK + LKP T+MN SG++VG+AMRF+KL PADV+VFHDELDLAP KLR+KTGGG  GHNG+RSI AHIG ++RR RIGIGHPG KD V   VL DF+  E
Sbjct:    1 MILLVGLGNPGEKYARNRHNIGFMAADAIVRRHSFAAPRARFQGLVSEGTLDGEKAIVLKPTTYMNESGRAVGEAMRFYKLEPADVIVFHDELDLAPAKLRIKTGGGTAGHNGIRSIAAHIGPDFRRVRIGIGHPGEKDRVLGAVLGDFSKAE 153
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BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Match: A0A0N9ZPA4_9RHOB (Peptidyl-tRNA hydrolase n=1 Tax=Celeribacter marinus TaxID=1397108 RepID=A0A0N9ZPA4_9RHOB)

HSP 1 Score: 221 bits (562), Expect = 1.510e-70
Identity = 106/153 (69.28%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGLIAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKLRVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFTNQE 459
            M L VGLGNPG KY+ NRHN G MAV+ IAD Y  A  R +FQG   +G +  EKV+ LKP TFMNLSGQSVG+AMRF+KLTPADVVVFHDELDL PGK+RVKTGGG+ GHNGLRSI  HIG +Y R R+GIGHPG+KD V  YVLSDF   E
Sbjct:    1 MRLFVGLGNPGGKYAENRHNIGFMAVERIADDYGFAPWRSKFQGKVSEGTLGHEKVILLKPETFMNLSGQSVGEAMRFYKLTPADVVVFHDELDLVPGKVRVKTGGGHAGHNGLRSIHQHIGADYDRVRMGIGHPGHKDRVAGYVLSDFAKAE 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig559.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3A646_9PROT1.520e-7371.90Peptidyl-tRNA hydrolase n=1 Tax=Alphaproteobacteri... [more]
A0A351T2D6_9PROT2.310e-7268.63Peptidyl-tRNA hydrolase n=2 Tax=Alphaproteobacteri... [more]
A0A1T4NXA4_9HYPH6.730e-7269.28Peptidyl-tRNA hydrolase n=1 Tax=Consotaella salsif... [more]
A0A512DRA8_9PROT2.050e-7169.28Peptidyl-tRNA hydrolase n=1 Tax=Skermanella aerola... [more]
UPI0015D4F1266.670e-7167.97aminoacyl-tRNA hydrolase n=1 Tax=Azospirillum olei... [more]
A0A098TAJ8_9HYPH7.300e-7165.36Peptidyl-tRNA hydrolase n=1 Tax=Hoeflea sp. BAL378... [more]
A0A1X7Q3H8_AZOLI9.160e-7167.97Peptidyl-tRNA hydrolase n=3 Tax=Azospirillum TaxID... [more]
UPI001AE4DB849.160e-7167.97aminoacyl-tRNA hydrolase n=1 Tax=Azospirillum agri... [more]
A0A2N3E6W4_9PROT1.500e-7066.67Peptidyl-tRNA hydrolase n=1 Tax=Alphaproteobacteri... [more]
A0A0N9ZPA4_9RHOB1.510e-7069.28Peptidyl-tRNA hydrolase n=1 Tax=Celeribacter marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig559contigP-wetherbeei_contig559:9171..9629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1547437.LL06_19080
Preferred namepth
PFAMsPept_tRNA_hydro
Model size459
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01056
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101
Exons1
Evalue1.2e-71
EggNOG OGsCOG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,2TT6Q@28211|Alphaproteobacteria,43HNA@69277|Phyllobacteriaceae
EC3.1.1.29
DescriptionThe natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
Cds size459
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.838617-CDS-P-wetherbeei_contig559:9170..96291683186831.838617-CDS-P-wetherbeei_contig559:9170..9629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig559 9171..9629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig559.10.1prot_P-wetherbeei_contig559.10.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig559 9171..9629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig559.10.1

>prot_P-wetherbeei_contig559.10.1 ID=prot_P-wetherbeei_contig559.10.1|Name=mRNA_P-wetherbeei_contig559.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MLLLVGLGNPGQKYSRNRHNAGMMAVDAIADHYRLAAPRHRFQGVTRDGL
IAGEKVVCLKPATFMNLSGQSVGDAMRFFKLTPADVVVFHDELDLAPGKL
RVKTGGGNGGHNGLRSIDAHIGLEYRRARIGIGHPGNKDLVTPYVLSDFT
NQE
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mRNA from alignment at P-wetherbeei_contig559:9171..9629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig559.10.1 ID=mRNA_P-wetherbeei_contig559.10.1|Name=mRNA_P-wetherbeei_contig559.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig559:9171..9629+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCTTGGTGGGGCTCGGCAATCCGGGTCAGAAATATTCCAGAAA
CAGACACAATGCCGGCATGATGGCGGTGGACGCGATAGCTGATCATTACC
GGCTGGCGGCGCCGCGCCATCGCTTTCAGGGGGTAACCCGTGATGGCCTG
ATTGCCGGTGAAAAAGTGGTCTGCCTGAAGCCCGCCACTTTCATGAATCT
GTCGGGACAATCGGTCGGCGATGCGATGCGGTTTTTTAAACTGACGCCTG
CGGATGTGGTGGTTTTCCATGACGAACTTGATCTGGCCCCCGGCAAGCTG
CGCGTAAAAACCGGCGGCGGCAATGGCGGGCATAATGGCTTGCGTTCCAT
CGATGCCCATATCGGGCTGGAATATCGCCGCGCGCGCATCGGCATCGGCC
ATCCCGGAAATAAAGATCTGGTCACACCCTATGTGCTGAGCGATTTCACG
AATCAGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig559:9171..9629+

>mRNA_P-wetherbeei_contig559.10.1 ID=mRNA_P-wetherbeei_contig559.10.1|Name=mRNA_P-wetherbeei_contig559.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig559:9171..9629+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCTTGGTGGGGCTCGGCAATCCGGGTCAGAAATATTCCAGAAA
CAGACACAATGCCGGCATGATGGCGGTGGACGCGATAGCTGATCATTACC
GGCTGGCGGCGCCGCGCCATCGCTTTCAGGGGGTAACCCGTGATGGCCTG
ATTGCCGGTGAAAAAGTGGTCTGCCTGAAGCCCGCCACTTTCATGAATCT
GTCGGGACAATCGGTCGGCGATGCGATGCGGTTTTTTAAACTGACGCCTG
CGGATGTGGTGGTTTTCCATGACGAACTTGATCTGGCCCCCGGCAAGCTG
CGCGTAAAAACCGGCGGCGGCAATGGCGGGCATAATGGCTTGCGTTCCAT
CGATGCCCATATCGGGCTGGAATATCGCCGCGCGCGCATCGGCATCGGCC
ATCCCGGAAATAAAGATCTGGTCACACCCTATGTGCTGAGCGATTTCACG
AATCAGGAA
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