mRNA_P-wetherbeei_contig55891.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55891.1.1
Unique NamemRNA_P-wetherbeei_contig55891.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A523PE64_9PROT (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PE64_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.960e-53
Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 1
Query:   19 LDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            +DVD L+ DI  +L +RI D     P ++G+ TGGVW+AQ L K++    P+GELNIAFYRDDFSRIG+HPTVEPS LPF V+DRHL+L+DDILYTGRT+RAAMNEIFDYGRP SI LVVL
Sbjct:    3 IDVDALLDDIGTQLIRRIADLGREDPVVIGVHTGGVWVAQHLHKRIAATLPLGELNIAFYRDDFSRIGLHPTVEPSKLPFAVDDRHLILIDDILYTGRTVRAAMNEIFDYGRPASIMLVVL 123          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A7C1XS28_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1XS28_9GAMM)

HSP 1 Score: 168 bits (426), Expect = 3.990e-51
Identity = 76/123 (61.79%), Postives = 101/123 (82.11%), Query Frame = 1
Query:   13 EQLDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            E LDVDTL+AD+A  L++ ++   ++ P ++GI TGGVW+A+RL ++L L  P+G LNI FYRDDF+RIG+HP VEPS LPF+V DRH++LVDD+L+TGRT+RAA+NEIFDYGRP S+ L VL
Sbjct:    3 ENLDVDTLLADLANDLRRTLEARGITDPLMIGIHTGGVWVAERLHRELGLAEPLGMLNIVFYRDDFTRIGVHPRVEPSNLPFEVEDRHIVLVDDVLHTGRTVRAALNEIFDYGRPASVLLAVL 125          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A5Q4FJP0_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=4 Tax=Chromatiales TaxID=135613 RepID=A0A5Q4FJP0_9GAMM)

HSP 1 Score: 166 bits (421), Expect = 2.290e-50
Identity = 76/119 (63.87%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   25 VDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            V  L+  +A  L+ R+QD  ++ P LVGI +GGVW+A++LQ +L+L  P+G L+I+FYRDDFSRIGMHP V+PS++PF V DRH+LLVDD+L+TGRTIRAAMNEIFDYGRP S++LVVL
Sbjct:    5 VKQLLDRMADELRHRLQDKGITDPGLVGIHSGGVWVAEQLQSRLQLEAPLGRLDISFYRDDFSRIGMHPQVKPSSIPFSVEDRHILLVDDVLFTGRTIRAAMNEIFDYGRPASVTLVVL 123          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A3D5DAT9_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DAT9_9GAMM)

HSP 1 Score: 165 bits (418), Expect = 6.160e-50
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 1
Query:   19 LDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            +DV  L+  ++  L++ I          VG+ TGGVW+AQ L  +L  P P+GELNIAFYRDDFSRIG+HPTVEPS LPFDVN+RHL+LVDDILYTGRT+RAAMNEIFDYGRP SI+LV L
Sbjct:    3 IDVAELLDRMSVELQKNITAEARENTVFVGVHTGGVWIAQHLHNRLANPFPVGELNIAFYRDDFSRIGLHPTVEPSKLPFDVNNRHLILVDDILYTGRTVRAAMNEIFDYGRPSSITLVAL 123          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A1Z9UM19_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UM19_9GAMM)

HSP 1 Score: 164 bits (414), Expect = 2.740e-49
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1
Query:   19 LDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            LD + LI  I  +    +   + S+   VGI TGGVWLAQR+ K L+L   IGELNIAFYRDDFS++G+HPTVEPS +PFD+ND+H++LVDDIL+TGRTIRAAMNE+FDYGRP SISLVVL
Sbjct:    7 LDTEELIESIVRQTNVLLDGLSSSETCFVGIHTGGVWLAQRICKDLRLSSVIGELNIAFYRDDFSKLGVHPTVEPSQIPFDINDKHVILVDDILHTGRTIRAAMNELFDYGRPLSISLVVL 127          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A521R955_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521R955_9GAMM)

HSP 1 Score: 163 bits (412), Expect = 5.350e-49
Identity = 76/119 (63.87%), Postives = 98/119 (82.35%), Query Frame = 1
Query:   25 VDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            V+ +IA++AARL + + D +   P ++GI+TGGVW+A+RL+ +L +  P+G LNIAFYRDDFSRIGMHP V PS LPF V DRH++LVDD+L+TGRT+RAAMNEIFDYGRP SI+L VL
Sbjct:    8 VEAIIAEMAARLGKFLADRDRRDPLILGIQTGGVWVAERLRTQLGIDHPLGRLNIAFYRDDFSRIGMHPHVTPSLLPFSVEDRHVILVDDVLHTGRTVRAAMNEIFDYGRPASIALAVL 126          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A523KAI6_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523KAI6_9GAMM)

HSP 1 Score: 163 bits (412), Expect = 5.350e-49
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1
Query:   22 DVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            DV   + ++  +++  I +++LS+  ++GI TGGVW+A+RL KKL +  P+G+LNIAFYRDDFSRIG HP V PS LPFD+ D+HLLLVDD+LYTGRTIRAA+NEIFDYGRP S+ L VL
Sbjct:    7 DVKQCVDEMITQIRAEIANNDLSEMLMIGIHTGGVWIAERLHKKLNIEPPLGKLNIAFYRDDFSRIGTHPQVTPSKLPFDIEDKHLLLVDDVLYTGRTIRAALNEIFDYGRPASVRLAVL 126          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A1G0G3N1_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G3N1_9GAMM)

HSP 1 Score: 162 bits (411), Expect = 7.130e-49
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   22 DVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            D++ L+  IA  LK  +Q    + P ++GI TGG+W+A  L KKL L  P+GELNIAFYRDDFS IG+HP V PS LPFDV++RH++LVDD+LYTGRTIRAA+NEIFDYGRP S++LVVL
Sbjct:    5 DIEGLLEQIALDLKSLLQAQLRTDPVMIGIHTGGIWVAAYLHKKLHLADPLGELNIAFYRDDFSHIGIHPRVTPSNLPFDVDNRHIILVDDVLYTGRTIRAALNEIFDYGRPASVTLVVL 124          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A1G0JZ65_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 TaxID=1798297 RepID=A0A1G0JZ65_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 1.180e-48
Identity = 74/121 (61.16%), Postives = 99/121 (81.82%), Query Frame = 1
Query:   19 LDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            ++V+ LI  +A +L+  ++   +S+PA++GI TGG+W+A+RL+ KL++  P+G LNIAFYRDDFS+IGMHP V PS LPF+V  RH++LVDD+LYTGRTIRAAMNEIFD+GRP SI L VL
Sbjct:    9 VNVEVLIDRLADQLQVWLRSKQISEPAIIGIHTGGIWIAERLRDKLRIAAPLGHLNIAFYRDDFSQIGMHPHVTPSKLPFEVEGRHIILVDDVLYTGRTIRAAMNEIFDFGRPASICLAVL 129          
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Match: A0A3S0TWG6_9GAMM (Bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0TWG6_9GAMM)

HSP 1 Score: 162 bits (409), Expect = 1.310e-48
Identity = 72/120 (60.00%), Postives = 99/120 (82.50%), Query Frame = 1
Query:   22 DVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQKKLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDILYTGRTIRAAMNEIFDYGRPRSISLVVL 381
            D + LI  +A +L++ +    ++ PALVGI TGGVW+A+RL+++L +  P+G+++IAFYRDDFSRIG+HP V PS LPFDV+DRH++L+DD+LYTGRTIRAA+NE+FDYGRP S+ L VL
Sbjct:    3 DAEFLIEALAGQLRELLTRRGIADPALVGIHTGGVWIAERLRRRLGILTPLGQMDIAFYRDDFSRIGVHPQVRPSELPFDVDDRHIVLIDDVLYTGRTIRAALNELFDYGRPASVLLAVL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55891.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523PE64_9PROT1.960e-5367.77Bifunctional pyr operon transcriptional regulator/... [more]
A0A7C1XS28_9GAMM3.990e-5161.79Bifunctional pyr operon transcriptional regulator/... [more]
A0A5Q4FJP0_9GAMM2.290e-5063.87Bifunctional pyr operon transcriptional regulator/... [more]
A0A3D5DAT9_9GAMM6.160e-5065.29Bifunctional pyr operon transcriptional regulator/... [more]
A0A1Z9UM19_9GAMM2.740e-4965.29Bifunctional pyr operon transcriptional regulator/... [more]
A0A521R955_9GAMM5.350e-4963.87Bifunctional pyr operon transcriptional regulator/... [more]
A0A523KAI6_9GAMM5.350e-4961.67Bifunctional pyr operon transcriptional regulator/... [more]
A0A1G0G3N1_9GAMM7.130e-4963.33Bifunctional pyr operon transcriptional regulator/... [more]
A0A1G0JZ65_9GAMM1.180e-4861.16Bifunctional pyr operon transcriptional regulator/... [more]
A0A3S0TWG6_9GAMM1.310e-4860.00Bifunctional pyr operon transcriptional regulator/... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55891contigP-wetherbeei_contig55891:1..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog519989.ECTPHS_03914
Preferred namepyrR
PFAMsPribosyltran
Model size381
Max annot lvl135613|Chromatiales
KEGG rclassRC00063
KEGG koko:K02825
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-48
EggNOG OGsCOG2065@1|root,COG2065@2|Bacteria,1RI6U@1224|Proteobacteria,1S6WA@1236|Gammaproteobacteria,1WXPI@135613|Chromatiales
EC2.4.2.9
Descriptionphosphoribosyltransferase
Cds size381
COG categoryF
BRITEko00000,ko00001,ko01000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.3791342-CDS-P-wetherbeei_contig55891:0..3811683186831.3791342-CDS-P-wetherbeei_contig55891:0..381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55891 1..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55891.1.1prot_P-wetherbeei_contig55891.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55891 1..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55891.1.1

>prot_P-wetherbeei_contig55891.1.1 ID=prot_P-wetherbeei_contig55891.1.1|Name=mRNA_P-wetherbeei_contig55891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MHELEQLDVDTLIADIAARLKQRIQDHNLSQPALVGIRTGGVWLAQRLQK
KLKLPGPIGELNIAFYRDDFSRIGMHPTVEPSALPFDVNDRHLLLVDDIL
YTGRTIRAAMNEIFDYGRPRSISLVVL
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mRNA from alignment at P-wetherbeei_contig55891:1..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55891.1.1 ID=mRNA_P-wetherbeei_contig55891.1.1|Name=mRNA_P-wetherbeei_contig55891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55891:1..381- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGAACTCGAACAACTAGACGTCGACACACTGATTGCGGACATTGC CGCGCGCCTGAAACAACGCATTCAGGATCACAATCTCAGCCAGCCGGCCC TGGTCGGTATCCGTACCGGTGGTGTATGGCTCGCCCAGCGTCTGCAGAAG AAATTGAAACTGCCCGGACCGATAGGTGAATTGAACATCGCCTTCTATCG CGACGACTTCAGCCGCATCGGCATGCATCCGACCGTCGAACCCTCGGCCC TGCCGTTTGACGTCAACGACCGTCATCTGCTGCTGGTCGACGACATTCTC TATACCGGCCGCACCATACGCGCGGCCATGAATGAGATTTTCGACTACGG TCGGCCACGCTCCATCAGCCTGGTGGTGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55891:1..381-

>mRNA_P-wetherbeei_contig55891.1.1 ID=mRNA_P-wetherbeei_contig55891.1.1|Name=mRNA_P-wetherbeei_contig55891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55891:1..381- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGAACTCGAACAACTAGACGTCGACACACTGATTGCGGACATTGC
CGCGCGCCTGAAACAACGCATTCAGGATCACAATCTCAGCCAGCCGGCCC
TGGTCGGTATCCGTACCGGTGGTGTATGGCTCGCCCAGCGTCTGCAGAAG
AAATTGAAACTGCCCGGACCGATAGGTGAATTGAACATCGCCTTCTATCG
CGACGACTTCAGCCGCATCGGCATGCATCCGACCGTCGAACCCTCGGCCC
TGCCGTTTGACGTCAACGACCGTCATCTGCTGCTGGTCGACGACATTCTC
TATACCGGCCGCACCATACGCGCGGCCATGAATGAGATTTTCGACTACGG
TCGGCCACGCTCCATCAGCCTGGTGGTGCTC
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