mRNA_P-wetherbeei_contig55850.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55850.1.1
Unique NamemRNA_P-wetherbeei_contig55850.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: UPI000AE971B1 (chloride channel protein n=1 Tax=Desulfotomaculum copahuensis TaxID=1838280 RepID=UPI000AE971B1)

HSP 1 Score: 229 bits (584), Expect = 1.020e-73
Identity = 118/173 (68.21%), Postives = 141/173 (81.50%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+LI G IGVVAG+GA++F  AI WST LFLG   G+ PP P+GEG PV   + R W++PVVTTIGGLLSG+IVF+FAPEAEGHGTDAAIDA HHK  ++  +VP VK++ASAITIGSGGS GREGP AQI+AGF S++   LKL A DRRIA+A G+GAGIGAIF+APLGG+
Sbjct:   18 WLLIAGSIGVVAGVGAIVFYEAIRWSTYLFLGLGAGFHPPGPLGEGQPVVTEITRRWMIPVVTTIGGLLSGLIVFKFAPEAEGHGTDAAIDAFHHKEGIIRARVPLVKIIASAITIGSGGSAGREGPTAQIAAGFGSIMGQLLKLNARDRRIALATGIGAGIGAIFKAPLGGA 190          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A7C3YQB1_9FIRM (Chloride channel protein (Fragment) n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3YQB1_9FIRM)

HSP 1 Score: 226 bits (576), Expect = 6.270e-72
Identity = 117/173 (67.63%), Postives = 139/173 (80.35%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+LI G IGVVAG GA+ F  AI WST LFLG   G+ PP P+GEG PV   + R W++PV+TT+GGLLSG+IV+ FAPEAEGHGTDAAIDA H+KG ++  +VP VK++ASAITIGSGGS GREGP AQI+AGF SLL   LKL   DRRIA+AAG+GAGIGAIF+APLGG+
Sbjct:   19 WLLIAGSIGVVAGAGAIAFFEAIKWSTYLFLGLGAGFYPPGPLGEGEPVVREIARRWMIPVITTVGGLLSGLIVYSFAPEAEGHGTDAAIDAFHNKGGIIRARVPLVKILASAITIGSGGSAGREGPTAQIAAGFGSLLGQALKLNVMDRRIALAAGIGAGIGAIFKAPLGGA 191          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A7C1XL29_9CHLR (CBS domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C1XL29_9CHLR)

HSP 1 Score: 238 bits (607), Expect = 6.500e-72
Identity = 122/173 (70.52%), Postives = 144/173 (83.24%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W L+   IG VAG+GA++F  AI +ST+LFLG +VGY+PP PVGEG P+ E M+RPWLLPVVT +GGLLSG++VF  APEAEGHGTDA I A+HH+G  +  +VP VKL+ASAITIG+GGS GREGPAAQISAGF SLLS WL++   DRRIAVAAGMGAGIGAIFRAPLGG+
Sbjct:   31 WFLLSSAIGAVAGVGAIVFYLAIKYSTQLFLGAMVGYVPPEPVGEGLPLVEVMERPWLLPVVTGLGGLLSGLLVFTTAPEAEGHGTDAVIAALHHRGGTIRTRVPLVKLIASAITIGTGGSAGREGPAAQISAGFGSLLSRWLRMDTRDRRIAVAAGMGAGIGAIFRAPLGGA 203          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A8J3IJA8_9CHLR (Chloride channel protein n=1 Tax=Reticulibacter mediterranei TaxID=2778369 RepID=A0A8J3IJA8_9CHLR)

HSP 1 Score: 222 bits (565), Expect = 1.130e-65
Identity = 123/176 (69.89%), Postives = 141/176 (80.11%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQ---RPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+LI  LIG+VAG+GAV+F  AI ++TE+FLGR+VGY PP P GEG     A     RPWLLP+VTT+GGLLSG+IVF  APEAEGHGTDAAI A H +G  V  ++P +KLVASAITIGSGGS GREGPAAQISAGF SLL+ WLKL   DRRIA+A GMGAGIGAIFRAPLGG+
Sbjct:   32 WLLISTLIGLVAGIGAVVFYAAIHFATEIFLGRLVGYFPPDPAGEGEHGIMAFWSAVRPWLLPIVTTLGGLLSGMIVFSLAPEAEGHGTDAAIAAFH-QGKAVRARIPLIKLVASAITIGSGGSAGREGPAAQISAGFGSLLATWLKLDVQDRRIALATGMGAGIGAIFRAPLGGA 206          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: K4LF15_THEPS (Voltage gated chloride channel n=3 Tax=Thermacetogenium phaeum TaxID=85874 RepID=K4LF15_THEPS)

HSP 1 Score: 218 bits (554), Expect = 6.720e-65
Identity = 113/173 (65.32%), Postives = 137/173 (79.19%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+LI   IGVVAG+GA+ F  AI WST LFL   VGY PP P+GEG  V   + R W++PVVTT+GGLLSG+IVFRFAPEAEGHGTDAAI+A H+K  ++  +VP +K++ASAITIGSGGS GREGP AQI+AGF SL+   L+L   DRRIA+A G+GAGIGAIF+APLGG+
Sbjct:   19 WLLIATAIGVVAGVGAIAFYEAIHWSTYLFLQLGVGYTPPAPLGEGKLVVTGISRRWMIPVVTTLGGLLSGLIVFRFAPEAEGHGTDAAIEAFHYKDGIIRARVPLIKVIASAITIGSGGSAGREGPTAQIAAGFGSLMGQLLRLNTDDRRIALATGIGAGIGAIFKAPLGGA 191          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A7I9VL61_9DELT (Chloride channel protein n=2 Tax=Anaeromyxobacter sp. Red267 TaxID=2590199 RepID=A0A7I9VL61_9DELT)

HSP 1 Score: 216 bits (551), Expect = 2.210e-64
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+L+G  IG VAGLGAV FT AI   T+L LG +VG+ PP PVGEG      M RPWLLPV+TT+GGL+SG++VF  APEAEGHGTDAAI+A H +G  + P++P VKLVASAITIG+GGS GREGPAAQISAGF +LL   +  +  DRRIAVAAG+GAGIGAIFRAPLGG+
Sbjct:   22 WLLVGIAIGAVAGLGAVAFTWAIRGVTQLGLGTLVGWAPPGPVGEGGAAVSRMARPWLLPVLTTLGGLVSGVLVFGLAPEAEGHGTDAAIEAFHRRGGWIRPRIPLVKLVASAITIGTGGSAGREGPAAQISAGFGALLGHAVLKSPQDRRIAVAAGIGAGIGAIFRAPLGGA 194          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: UPI0015664069 (chloride channel protein n=1 Tax=Nitrolancea hollandica TaxID=1206749 RepID=UPI0015664069)

HSP 1 Score: 207 bits (527), Expect = 6.140e-64
Identity = 107/173 (61.85%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+++  L+G+VAG+GA+ F   I  +T  FLG + GY+PP P GEG+       RPWLLP+V  +GGLLSG++VF  APEAEGHGTDAAI+A H KG  +  ++PP+KL+ASAITIGSGGS GREGP AQISAGF S+L   LKL   +RRI VAAG+GAGIGAIFRAPLGG+
Sbjct:   31 WLVLAVLVGIVAGVGAIAFYWLIQAATAFFLGSLAGYIPPEPFGEGNRPGTGFGRPWLLPLVVALGGLLSGLLVFFLAPEAEGHGTDAAIEAFHEKGGRIRARIPPIKLIASAITIGSGGSAGREGPTAQISAGFGSVLGDMLKLEDNERRILVAAGIGAGIGAIFRAPLGGA 203          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A5J4KXN0_9CHLR (Uncharacterized protein n=1 Tax=Dictyobacter vulcani TaxID=2607529 RepID=A0A5J4KXN0_9CHLR)

HSP 1 Score: 206 bits (524), Expect = 1.380e-63
Identity = 113/176 (64.20%), Postives = 135/176 (76.70%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQE---AMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+ +  LIG +AGLGA+ F  AI +ST +FLG +VGY PP P GEG  V     A   PWLLP+VT +GGL++GIIVF FAPEAEGHGTDAAI A H +G  +  ++P +KLVASAITIG+GGS GREGPAAQISAGF S+L   L+L A DRRIA+A G+GAGIGAIFRAPLGG+
Sbjct:   17 WVFLSTLIGCIAGLGAIAFYAAIHFSTSVFLGGMVGYQPPEPAGEGETVVTSFWAAAHPWLLPLVTALGGLIAGIIVFTFAPEAEGHGTDAAIAAFH-EGKSIRARIPLIKLVASAITIGTGGSAGREGPAAQISAGFGSILGSVLRLDAQDRRIALATGIGAGIGAIFRAPLGGA 191          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A1Q3SYU4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium 54-19 TaxID=1895928 RepID=A0A1Q3SYU4_9CHLR)

HSP 1 Score: 216 bits (549), Expect = 3.190e-63
Identity = 111/173 (64.16%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+ +G  IG+VAGLGA++FT AI +ST  FL  + GY PP  +GEG        RPWL P++  +GGL+SGIIV+RFAPEAEGHGTDAAI A HHKG  V  +VP +KL+ SAITIGSGGSGGREGP AQIS+GF SLL+ WLKL  + RRIA+  GMGAGIG+IFRAPLGG+
Sbjct:   33 WLGLGLAIGLVAGLGAIVFTWAIDFSTHFFLTNLAGYTPPSALGEGKETITEAARPWLFPLILAVGGLISGIIVYRFAPEAEGHGTDAAIAAFHHKGGKVRARVPFIKLITSAITIGSGGSGGREGPTAQISSGFGSLLATWLKLDVSSRRIAMVVGMGAGIGSIFRAPLGGA 205          
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Match: A0A661UT30_9CHLR (Chloride channel protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661UT30_9CHLR)

HSP 1 Score: 204 bits (520), Expect = 4.500e-63
Identity = 105/173 (60.69%), Postives = 130/173 (75.14%), Query Frame = 1
Query:    1 WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQEAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVVTPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADRRIAVAAGMGAGIGAIFRAPLGGS 519
            W+++G LIG VAG GA++F  AI  + +L LG + G  PP+P GEG  +   + R W++PVV  IGGLLSGIIV+ FAPEAEGHGTDAAIDA H +G  +   +PPVK++ASAITIGSGGS GREGP AQI+AGF S L    +LT  DRRI VA G+GAG+GAIF+APLGG+
Sbjct:   22 WVILGALIGAVAGFGAIVFFEAIEIAGDLLLGELAGVHPPLPAGEGDTLVTEIGRRWMIPVVLVIGGLLSGIIVYTFAPEAEGHGTDAAIDAFHERGGRIRRLIPPVKIIASAITIGSGGSAGREGPTAQIAAGFGSWLGDVFRLTPEDRRILVAVGIGAGVGAIFKAPLGGA 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55850.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000AE971B11.020e-7368.21chloride channel protein n=1 Tax=Desulfotomaculum ... [more]
A0A7C3YQB1_9FIRM6.270e-7267.63Chloride channel protein (Fragment) n=1 Tax=Firmic... [more]
A0A7C1XL29_9CHLR6.500e-7270.52CBS domain-containing protein n=1 Tax=Dehalococcoi... [more]
A0A8J3IJA8_9CHLR1.130e-6569.89Chloride channel protein n=1 Tax=Reticulibacter me... [more]
K4LF15_THEPS6.720e-6565.32Voltage gated chloride channel n=3 Tax=Thermacetog... [more]
A0A7I9VL61_9DELT2.210e-6467.05Chloride channel protein n=2 Tax=Anaeromyxobacter ... [more]
UPI00156640696.140e-6461.85chloride channel protein n=1 Tax=Nitrolancea holla... [more]
A0A5J4KXN0_9CHLR1.380e-6364.20Uncharacterized protein n=1 Tax=Dictyobacter vulca... [more]
A0A1Q3SYU4_9CHLR3.190e-6364.16Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A661UT30_9CHLR4.500e-6360.69Chloride channel protein (Fragment) n=1 Tax=Chloro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55850contigP-wetherbeei_contig55850:2..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1089553.Tph_c04440
Preferred nameeriC
PFAMsVoltage_CLC
Model size519
Max annot lvl186801|Clostridia
KEGG koko:K03281
KEGG TC2.A.49
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.1e-65
EggNOG OGsCOG0038@1|root,COG0517@1|root,COG0038@2|Bacteria,COG0517@2|Bacteria,1TPX0@1239|Firmicutes,247R4@186801|Clostridia,42EPF@68295|Thermoanaerobacterales
DescriptionPFAM Cl- channel voltage-gated family protein
Cds size519
COG categoryP
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.0193758-CDS-P-wetherbeei_contig55850:1..5201683186831.0193758-CDS-P-wetherbeei_contig55850:1..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55850 2..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55850.1.1prot_P-wetherbeei_contig55850.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55850 2..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55850.1.1

>prot_P-wetherbeei_contig55850.1.1 ID=prot_P-wetherbeei_contig55850.1.1|Name=mRNA_P-wetherbeei_contig55850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
WILIGGLIGVVAGLGAVLFTHAIGWSTELFLGRIVGYMPPMPVGEGSPVQ
EAMQRPWLLPVVTTIGGLLSGIIVFRFAPEAEGHGTDAAIDAIHHKGAVV
TPKVPPVKLVASAITIGSGGSGGREGPAAQISAGFASLLSGWLKLTAADR
RIAVAAGMGAGIGAIFRAPLGGS
back to top

mRNA from alignment at P-wetherbeei_contig55850:2..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55850.1.1 ID=mRNA_P-wetherbeei_contig55850.1.1|Name=mRNA_P-wetherbeei_contig55850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55850:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
TGGATCCTCATCGGCGGCCTGATCGGGGTCGTCGCCGGACTCGGGGCCGT CCTCTTCACCCACGCCATCGGCTGGAGCACCGAGCTCTTCCTCGGTCGCA TCGTCGGCTACATGCCGCCCATGCCGGTCGGCGAGGGCAGCCCCGTGCAG GAAGCCATGCAGCGCCCGTGGCTGCTGCCCGTCGTCACCACCATCGGCGG CCTCCTCTCCGGCATCATCGTCTTCCGCTTCGCGCCCGAGGCCGAGGGCC ACGGCACCGATGCCGCCATCGACGCCATCCACCACAAGGGCGCGGTGGTG ACCCCCAAGGTGCCGCCCGTGAAACTGGTCGCCTCCGCCATCACCATCGG CTCGGGCGGCTCCGGCGGGCGTGAGGGCCCCGCCGCGCAGATCTCCGCCG GCTTCGCCTCCCTGCTCTCCGGCTGGCTGAAGCTCACTGCCGCTGACCGC CGGATCGCCGTCGCCGCCGGCATGGGCGCGGGCATCGGCGCCATCTTCCG GGCGCCGCTCGGCGGCTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55850:2..520+

>mRNA_P-wetherbeei_contig55850.1.1 ID=mRNA_P-wetherbeei_contig55850.1.1|Name=mRNA_P-wetherbeei_contig55850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55850:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
TGGATCCTCATCGGCGGCCTGATCGGGGTCGTCGCCGGACTCGGGGCCGT
CCTCTTCACCCACGCCATCGGCTGGAGCACCGAGCTCTTCCTCGGTCGCA
TCGTCGGCTACATGCCGCCCATGCCGGTCGGCGAGGGCAGCCCCGTGCAG
GAAGCCATGCAGCGCCCGTGGCTGCTGCCCGTCGTCACCACCATCGGCGG
CCTCCTCTCCGGCATCATCGTCTTCCGCTTCGCGCCCGAGGCCGAGGGCC
ACGGCACCGATGCCGCCATCGACGCCATCCACCACAAGGGCGCGGTGGTG
ACCCCCAAGGTGCCGCCCGTGAAACTGGTCGCCTCCGCCATCACCATCGG
CTCGGGCGGCTCCGGCGGGCGTGAGGGCCCCGCCGCGCAGATCTCCGCCG
GCTTCGCCTCCCTGCTCTCCGGCTGGCTGAAGCTCACTGCCGCTGACCGC
CGGATCGCCGTCGCCGCCGGCATGGGCGCGGGCATCGGCGCCATCTTCCG
GGCGCCGCTCGGCGGCTCG
back to top