mRNA_P-wetherbeei_contig558.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig558.2.1
Unique NamemRNA_P-wetherbeei_contig558.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A835Z5W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 6.400e-60
Identity = 135/319 (42.32%), Postives = 181/319 (56.74%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGR---LELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGG-FGAAYLVVIKDILFLEPDDGAFPVLYAATAPMDDLIKLNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWIGVAASDASLPRDYVTRERRLWDAAHMLAELA 1193
            N GIG R A  L + G  V++  R++ K      EI+ E    V+ GGR   LELM  DL D  SV  FV DF++K  RLDVL+N+AG    GR+K     +F + F+G F+LT+ L D I  T GARV+NL+S+MH +G  DWE A   WG       S       Y  +KLAM++F++ELRRRFR AG +AT+ AV+PG V++ IW  V   F   Y  V++   FL  + GAF  +YAA AP+D L           PD P LY +PY LP GL  PFE+ GP++G  A+  ++P D+     RLW+    + E A
Sbjct:   65 NTGIGKRTALHLARLGGTVILACRSQEKAAAARDEITAE----VQAGGRVAKLELMSLDLADTHSVRSFVSDFKAKHDRLDVLVNNAGLNAGGRTKQGLGLVFASNFVGHFLLTKLLQDTITATPGARVVNLASLMHHYGRVDWERAC--WGNDDWKGFS------SYQASKLAMVLFSQELRRRFRRAGGTATSFAVNPGAVRSDIWRFVPPPFKYVYDAVMR-AGFLNVEQGAFTSVYAAAAPLDALG---------GPDGP-LYWQPYLLPLGLAHPFEVAGPFVGATAAAPAVPPDHEREGARLWEECTRMVEAA 360          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A835ZF30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF30_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.370e-58
Identity = 124/316 (39.24%), Postives = 175/316 (55.38%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAPMDDLIK-LNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWIGVAASDASLPRDYVTRERRLWDAAHMLAELA 1193
            N G+G R A  L +    VV+  RN  KG     E+  E  +       + +M  +L    S+ +FV DF++K+ RLD+L+N+AG   PG +       F A +LGA+++T  L D I  T GARVIN+SS +H +G+T WE AA+G  RG  D   +NV  + YAD+KLAM++FT ELRRRF +   SA AI V PG V + IW  V       + V+   +FL PD    P + AA AP+++L   + K+ + L     PLYL+PYW P     PF++ GP+ G   S  SLP +Y    +RLW  +  L + A
Sbjct:   60 NTGVGKRTAFHLAKMKATVVLAVRNMEKGHMAKKELIKELQKHKIMAPDINVMELELCSTGSIKRFVHDFKAKYNRLDILVNNAGQVDPGTTDQGLSSTFMADYLGAYMMTTMLYDTIRNTQGARVINVSSPLHHYGTTKWEDAAMGR-RGEPDF--MNVLFHCYADSKLAMMLFTNELRRRFAADNCSAVAICVSPGNVNSDIWRTVPIPLLMPMKVVMAAVFLTPDQACHPSVMAAAAPLNELKGFMAKDAEEL-----PLYLQPYWNPLKQAHPFDVFGPYAGTDVSIPSLPPNYEEEGKRLWFVSSELIKAA 367          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: D8LBW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW3_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.710e-53
Identity = 121/332 (36.45%), Postives = 174/332 (52.41%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQ-----------GGRLELMLCDLNDLESVAQFVLDFRSKF-QRLDVLINDAGTTL---PGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWG--RGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAPMDDLIKLNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWIGVAASDASLPRDYVTRERRLWDAAHMLAELA 1193
            N GIG+R A  L + G  V+M  R+  +GE    ++ +E  E + +            G LE+M CDL++LESV  F  +F+ K   RLDVL+N+AG  +   P  + D    +F   F+G F LT  LL LI+ T  ARV+ LSSVMH  G TDWE+A +G    RG+            YAD+KLAM++F +EL++RF +AG SATA+AV+PG V++ IW NV         +    LFL  + G++  + AA  P++ +                 Y +PYW+PF   +PFE+ GP++G A     L +D       LW     + E A
Sbjct:   54 NTGIGSRTAFNLAKAGAKVIMACRSLERGESARQQLEEEMRETLSKVEGGGGASAARQGTLEVMKCDLSELESVRTFAREFKVKHGDRLDVLVNNAGVGITDGPRVTADGLDLVFGVNFVGHFCLTNELLPLIQSTPAARVVCLSSVMHHSGGTDWESAVMGHPKRRGST-----------YADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNVPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETVSGSG-------------YYQPYWMPFKRPLPFEVFGPFVGCAPGLPKLVKDEPAATSALWTTCERVIEAA 361          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A6L3ERR4_9CHLR (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3ERR4_9CHLR)

HSP 1 Score: 154 bits (389), Expect = 6.280e-40
Identity = 96/248 (38.71%), Postives = 138/248 (55.65%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPG--RSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPN-----GYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAP 971
            N+GIG   A  L Q+G  V++  R+  KGE    +I  E P        L+LM  DL+DL SV QFV +F+ ++++LD+L+N+AG  +P   ++KD ++  F    LG F LT  LLDLI +T  ARV+N+SS+ H+ G  D+E              +LN   N      Y  +KLA L+FT EL+RRF++A ++A A A HPG   T +  + G F      ++  I   +P+ GA P LYAA AP
Sbjct:   26 NSGIGYETARALAQKGATVILACRSLPKGETAVSQIRQETPTA-----NLDLMQLDLSDLSSVRQFVQEFKEQYKQLDLLVNNAGVMVPPFTKTKDGFELQFGTNHLGHFALTGQLLDLIIRTPNARVVNVSSMAHKMGQIDFE--------------NLNAEKNYNRSGAYGQSKLANLLFTYELQRRFQTASINAVATAAHPGWTGTNLQSHSGLFS-----MLNPIFSQKPEMGALPTLYAAIAP 249          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A835YP27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP27_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.000e-38
Identity = 103/316 (32.59%), Postives = 158/316 (50.00%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPE-GVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAPMDDLIKLNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWIGVAASDASLPRDYVTRERRLWDAAHMLAELA 1193
            N GIG + A  L + G  ++M  R+K +GE+   ++   F   G+K    +E+M  DL +  S+  F  DF+ K+  L +L+N+AGT +PG +      +F   +LG F+LT  L D I+ T  ARV+N+SS++HR+G+T W AAA G  RG+ +    N   + Y D+KLAM++FT+                        + IW  V  +    L +   + FL  + G    + AA AP++ L    +         P LYL+PY  P     PF+++GP+ G   + ASLP D      RLWD +  + E A
Sbjct:  112 NTGIGRKTAEHLAETGVTLIMACRSKERGEQAMADMERSFSRRGIKTN--IEVMQLDLLEPASIRAFARDFKQKYDALHILVNNAGTNIPGITDRGLDYVFTVSYLGHFMLTNLLYDTIKATPDARVVNVSSLLHRYGTTQWAAAATGK-RGSDNY--FNALFHVYCDSKLAMMIFTQ------------------------SDIWRAVPLWLRIPLDLFMRVAFLSTEQGCHTSVMAALAPLEALSTDGE---------PALYLQPYKGPVQKR-PFDVIGPFGGTVPTTASLPADVKAEGERLWDTSAKIWEAA 388          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A7Y3BU72_9DELT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3BU72_9DELT)

HSP 1 Score: 145 bits (366), Expect = 1.180e-36
Identity = 98/243 (40.33%), Postives = 129/243 (53.09%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLP--GRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAP 971
            N+GIG   A  L ++G  VVM  RN  K      EI    P     G  +E+M  DL+DLESV +F  +FR K+QRLD+LIN+AG  +P  G++   ++  F    LG F LT  LL LI  T G+R++ +SSV H FG  D+  + L W  G     +       Y  +KLA L+FT EL+RR  +AG    A+A HPG  +T +   V   G  +L      L   P  GA P LYAATAP
Sbjct:   25 NSGIGFETARVLAEKGATVVMACRNLDKANPKAEEIRTANP-----GAMVEVMQLDLSDLESVKRFAQEFRGKYQRLDLLINNAGIMVPPYGQTAQGFETQFGVNHLGHFALTGALLGLITNTPGSRIVTVSSVAHLFGKIDF--SDLNWENGYKAQAA-------YGQSKLANLLFTYELQRRLAAAGKDTLAVAAHPGWTETNL--QVHAKGVKFL---NRFLAQAPPMGALPTLYAATAP 248          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: UPI000289A710 (oxidoreductase n=1 Tax=Salinibacterium sp. PAMC 21357 TaxID=1112215 RepID=UPI000289A710)

HSP 1 Score: 142 bits (357), Expect = 3.260e-35
Identity = 101/251 (40.24%), Postives = 137/251 (54.58%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGE----RVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPGRSK--DNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFPNG-YADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFL---EPDDGAFPVLYAATAP 971
            N+G+G   +  L++ G HVVMT R+  K E    R+ GE+ +           LE ML DL DLES+ +F  +F SK  RLD+LIN+AG  +       D ++       LG F LT  LLD+I  T GARV++LSSV HR+G  ++         G L   + +  P   Y  +KLA L+FT EL+RRF +AGV A A+A HPGT  T +  ++  F   YL  +K ++FL    P  GA P L AAT P
Sbjct:   26 NSGLGFETSRALLKAGAHVVMTMRSAAKAETAATRLLGELGEVS---------LETMLLDLADLESIRRFSDEFHSKHSRLDLLINNAGIMMTDAQLTIDGFESQLGTNHLGHFALTGRLLDVIAATPGARVVSLSSVAHRWGFMEF---------GNLMFQNGSYTPRAAYGRSKLANLLFTYELQRRFEAAGVDAMAVAAHPGTAGTGLADHM--FDRWYLRPLKKLVFLGIQTPKQGAQPSLRAATDP 256          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A7S3Y5K9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5K9_HETAK)

HSP 1 Score: 143 bits (360), Expect = 3.400e-35
Identity = 109/315 (34.60%), Postives = 154/315 (48.89%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDE-------FPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQT-DGARVINLSSVMHRFGST--DWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAPMDDLIKLNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWIGVAASDASLPRDYVTRERRLW 1163
            N GIG R+A  L + G  V++  R+  +G      I +E       FP   +  GR+     DL D ES+  F       +  +DVLIN+AG      +K    ++F   FLG F+LT  LL+ ++    GAR+IN+SSV+HRF  +  D+EA+A G  +            + Y ++KLAM++FT+ELRRR +  G   +A AV PG V++ IW +  G   A L      LFL+ D GA P ++ A AP   L      H         LY  PY       +PFE+LGP+ G   S  SLP +       LW
Sbjct:   52 NCGIGFRSAAWLSKMGATVILACRSTERGLAAEKAIKEELETPLASFP--YRDTGRVVFHKLDLGDFESIRSFASTICQGYMNIDVLINNAGLNDGKMTKQGLDEVFGVNFLGHFLLTILLLEKLKNNFRGARIINVSSVVHRFSPSKPDFEASANGMDK-----------MHNYQNSKLAMVLFTKELRRRLK--GTQVSAYAVSPGAVRSEIWRSWRGLPRAALNAAMAALFLDTDQGAAPSIHCAAAPPAAL----GTH---------LYHCPYLTAPACPLPFEMLGPYAGALPSRPSLPDNEPEISADLW 338          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A847SMC3_9ARCH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Methanomassiliicoccus sp. TaxID=2528041 RepID=A0A847SMC3_9ARCH)

HSP 1 Score: 140 bits (354), Expect = 1.130e-34
Identity = 92/245 (37.55%), Postives = 133/245 (54.29%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGT--TLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGWGRGALDVCSLNVFP--NGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAP 971
            N+GIG   A  L Q+G  V++  RN  K      EI    P      G++E+M  DL+DL+SV +F   FR ++ RLD+LIN+AG   T  G++K  ++Q F    LG F LT  LLD +  T GAR++ +SS  HR G+ D++           D+ S   +     Y  +KLA L+FT EL+RR  + G S  A+A HPG+ +T    N+     A++ ++  I+  + D GA P LYAAT P
Sbjct:   24 NSGIGWHTARVLAQKGATVIIACRNMQKANTAADEIRAFNP-----SGKVEVMPLDLSDLDSVREFEALFRERYDRLDLLINNAGIMFTPQGKTKQGFEQQFGTNHLGHFALTGILLDKLNGTPGARIVTVSSGAHRMGNIDFD-----------DLNSERDYSPYRAYGQSKLANLLFTYELQRRLIATGQSTLAVAAHPGSTRT----NLTRHSNAFVKLLDRIISQKSDMGALPTLYAATEP 248          
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Match: A0A1U7NRS2_9DEIO (Oxidoreductase/Short-chain dehydrogenase n=3 Tax=Deinococcus TaxID=1298 RepID=A0A1U7NRS2_9DEIO)

HSP 1 Score: 141 bits (356), Expect = 1.610e-34
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 3
Query:  249 NAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFGEISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDAGTTLP--GRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMHRFGSTDWEAAALGW-GRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFRSAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPVLYAATAP 971
            N+G+G   A  L Q G  VVM  RN  K E   G I    P G     ++  M  DL DL+SV  F  DF+ +F+RLD+L+N+AG  +P  G +   ++  F    LG F LT  L+D++  T  ARV+NLSS+ HRFG  +++   L W GR           P  Y  +KLA L+FT EL+RR ++AG +  A+A HPG   T + G     G      +  ++    + GA P +YAATAP
Sbjct:   98 NSGLGYETARALAQHGATVVMACRNAQKAEAAAGRILATGPRG-----KVIPMSLDLGDLDSVRAFADDFKGRFERLDLLVNNAGIMVPPQGETAQGFETQFGVNHLGHFALTAQLIDVLNATPDARVVNLSSIAHRFGKIEFDD--LNWKGR------EYKPMP-AYGQSKLANLLFTYELQRRLQAAGKTTVAVAAHPGYAATGLQGEGMNDG------LMGLIAQTQEMGALPSMYAATAP 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig558.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5W3_9STRA6.400e-6042.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF30_9STRA1.370e-5839.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBW3_ECTSI1.710e-5336.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6L3ERR4_9CHLR6.280e-4038.71SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A835YP27_9STRA5.000e-3832.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7Y3BU72_9DELT1.180e-3640.33SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000289A7103.260e-3540.24oxidoreductase n=1 Tax=Salinibacterium sp. PAMC 21... [more]
A0A7S3Y5K9_HETAK3.400e-3534.60Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A847SMC3_9ARCH1.130e-3437.55SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1U7NRS2_9DEIO1.610e-3438.11Oxidoreductase/Short-chain dehydrogenase n=3 Tax=D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig558contigP-wetherbeei_contig558:3778..7492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBW3
PFAMsadh_short
Model size1289
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K11153
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.68e-55
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.1.1.300
Descriptionoxidation-reduction process
Cds size1089
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig558.2.1prot_P-wetherbeei_contig558.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig558 3978..7492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.608815-UTR-P-wetherbeei_contig558:3777..39771683186830.608815-UTR-P-wetherbeei_contig558:3777..3977Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig558 3778..3977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.6192837-CDS-P-wetherbeei_contig558:3977..41091683186830.6192837-CDS-P-wetherbeei_contig558:3977..4109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 3978..4109 +
1683186830.6303582-CDS-P-wetherbeei_contig558:4390..45561683186830.6303582-CDS-P-wetherbeei_contig558:4390..4556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 4391..4556 +
1683186830.6410944-CDS-P-wetherbeei_contig558:4971..52521683186830.6410944-CDS-P-wetherbeei_contig558:4971..5252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 4972..5252 +
1683186830.652578-CDS-P-wetherbeei_contig558:5604..57361683186830.652578-CDS-P-wetherbeei_contig558:5604..5736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 5605..5736 +
1683186830.6703823-CDS-P-wetherbeei_contig558:6740..68171683186830.6703823-CDS-P-wetherbeei_contig558:6740..6817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 6741..6817 +
1683186830.680701-CDS-P-wetherbeei_contig558:7191..74921683186830.680701-CDS-P-wetherbeei_contig558:7191..7492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 7192..7492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig558.2.1

>prot_P-wetherbeei_contig558.2.1 ID=prot_P-wetherbeei_contig558.2.1|Name=mRNA_P-wetherbeei_contig558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
MRREHCLFTRFDELQLNAGIGTRAAGRLVQRGYHVVMTTRNKTKGERVFG
EISDEFPEGVKQGGRLELMLCDLNDLESVAQFVLDFRSKFQRLDVLINDA
GTTLPGRSKDNYQQLFQAGFLGAFVLTRGLLDLIEQTDGARVINLSSVMH
RFGSTDWEAAALGWGRGALDVCSLNVFPNGYADAKLAMLMFTEELRRRFR
SAGVSATAIAVHPGTVKTAIWGNVGGFGAAYLVVIKDILFLEPDDGAFPV
LYAATAPMDDLIKLNKEHDPLAPDHPPLYLEPYWLPFGLTIPFELLGPWI
GVAASDASLPRDYVTRERRLWDAAHMLAELARLRRHKKADLQLRSSSSSS
SPLSGEDGEKAER
back to top

mRNA from alignment at P-wetherbeei_contig558:3778..7492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig558.2.1 ID=mRNA_P-wetherbeei_contig558.2.1|Name=mRNA_P-wetherbeei_contig558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3715bp|location=Sequence derived from alignment at P-wetherbeei_contig558:3778..7492+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTGGGGTTTCCCCTTTTCAACCCCGTCCTACCGAACGTCGACGGGA CAGGAAAGGTCGCCATCGTTGTCGGAGCGACGTCCGGTGTGTGCTGCCGG GGATTTCTGTTCCGGGTCGGGAAGAAGGATTGCAATGCGTTGAAGGCTAC GACATGTGAACTGCTATCTAGGAAGGAAGATTTTGAATGCGTTGTCATCG ATGCGGCGCGAGCATTGCCTTTTCACCAGATTTGATGAACTGCAACTGAA TGCAGGTATCGGGACGCGGGCTGCGGGACGCCTCGTCCAGCGAGGGTACC ACGTCGTGATGACGACGCGGAATAAGACAAAGGTGCGCCCAATTTGGCTT AACTACATCATACTGCATTCAACAGACCGTATCGGGGCATTTCTTTGTGT CCCTCTTTCTCCTTTCTCTAATGGAAGAAGCGTTACCCCCATTCATCCTC CTCCTGCCAGAAGAATCCTTTCCTCCATCTTCCTCCCAGCGGAACACGCC TCTGTCTTCCTTCTCAGTGCAACAAGCAAGACAATACCACCCCGCGCCGC GCCACCGAAGAAAGACAGAACGGCCCCCTCTTTGCCTACGAACTCGAACA AAATCCGTACCAGGGCGAGCGCGTCTTCGGCGAGATCAGCGACGAGTTTC CCGAGGGGGTCAAGCAGGGCGGTCGTCTGGAGCTGATGCTATGCGACCTG AACGACCTCGAGTCGGTGGCGCAGTTCGTGCTCGACTTCCGCAGCAAGTT TCAGCGGCTCGACGTCCTCATCAACGACGGCGAGTCAGCGAAGCCAGTCA GTCCATTTGTCTGTTGGGCCGTCGTTGGTATGTGTTTCTTGGCGTCCAGC GGCAGCGTTTGAGTCGAGCAACAGTGTTTGGATGTTAGCGGGATCTCGAG AATTGCTTCGGCAGGCGGGCGATGGTGGCGGCGCTCTAACCCTTGTGCCT CCCTGAAAAGACTCGTCTTTTACCGACTCAATCTCCTACTGCCACCGCCA CCACTGCCGCCACACATTGCTGCTGCCGCTGCCTTCGTTGCCAACGCCGC CGCTACTGTTGCCGCCGCGCCGCCCCTGCCGCCCCTGCCGCCCCTGCCGC CCCTGCCGCCCCTGCCGCCCCTGCCGCCCCTGCCGCCCCTGCCGCCCCTG CCGCCCCTGCCGCCCCATCCCTCAAAACCGCCATGCGACCTCAGCCGGCA CGACCCTACCCGGACGCAGCAAGGACAACTACCAGCAGCTCTTCCAGGCC GGCTTCCTCGGCGCCTTTGTTCTGACGCGCGGCCTCCTAGACTTGATCGA GCAGACCGATGGCGCCCGCGTTATCAACCTGTCATCGGTCATGCACCGCT TCGGCTCCACCGACTGGGAGGCGGCAGCGCTCGGGTGGGGCCGCGGTGCG CTAGACGTCTGCAGCCTCAACGTGTTTCCGAACGGCTACGCGGACGCCAA GCTCGCTATGCTCATGTTCACCGAAGTGAGATGAATGATTCCATTCGTGA AGTCTTTTCCGGACTCGCCTGGAAAACTGGTATCAGGCATAGTGCTTTTC AAACCCTGTTGCCTGCAAGGGGGGCGCTCTTTCACGAAGGACGCGCGAAC TCTGTCTAGGGGTACCCTTCTTCTCACTTATAGAAAGAAGGGCTCCTCAC GTCGTTGAAAGAAGTGCGGCTGCCACCACTGCCACCGCTGTCGTCCCGCT GCCGCTGCCGCCGCCTCCACCGCTGTCACCTCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCCGCTGCGACGGCTCCTACCTCCATCCGCTGCCGTTGCC GGCCCACTACTTCTGTTCATATCACAGGAGCTGCGGCGGCGCTTCCGCTC GGCAGGCGTGAGTGCGACGGCAATCGCCGTCCACCCGGGCACCGTCAAGA CCGCCATCTGGGGGAATGTCGGCGGTTTTGGGGCGGCCTACCTCGTGGTC ATCAAGGACGTGAGTGCTACCCCAATAGTACTGATAGCGGGCTGGGGGTA AGGGTAGATTCAAAACCGATCGGCGGATAGGTGGTGCGTTTAGAGCGATG TATTGCATTCGGGATATTTGGAGTGTGGTCATTTCGCCGCCGCGGTGCGG GCCCAGCAAAGCAGGCTTAAGGCAGCAGCGGGAAGCCATTGAAGAGCATC AGCTTTTCCGCCTTTCCCGGCCGCAGATACGCTTGTTTCCAAAGCTTTGC GTCCACAGAGCTCGCCTGCGTTCGCCGATGTTGTCTTCACATTCGCCCTC CTCGGGGTGGCAGCAGTTTGGGCACAGGTCGATATGGCACTTACCCGGGG CAGGCAGTTGTCCCACCTCGCCGCCCGGGCACGCCTTTGCGAGCCGTTTC CTTCCGGTCTTTGCGTGGCCACGTACCGTTTGCCGCAATGTAAAACGGCT CGGATGAACAGGCTGGCGCAGATGCTCCAGGCTGCCGAGGTGGTAAACAA GACATATGGCGAAGTGGTGCTACGATTCCCGAAACTTTTGGTTACCATCG GAGAACTATGTTGACGGTGTTGATGACATGGGGGGAGTTCAGAACGCTCT TTGGGGATGAAGCTTTGAAGACCGAAAAATGTATTTCCGGGAGGAAAGCA ACGATTAGGCCTCTGAAGTCGCCGCACTCCTGCCGACTCCAGTCAAAGAA AGTTTGCTGAGAGGCGTGCTGAATCAGGCGGGCTCCGCGAGCAAAGGTAG TACCGCGGGGCAGCAAGATGCCGCGGAGGCGATTATTTATGTGTTCTACG AAATTGTTTGCGATGAGTTCTGGAAGTAAAGTTTGGAAACGACGCCAGAA ACGTCCGCCACTATGGTATCGACTTTTGACCGTGGGTCTTTTCGTTGATT TCGTGGTATTATATCAGTGATTTTCACAAGCACTGTGTCCGAGCAAATCC TCTCTGCCCTCATTGCTATTACCTTAATTTGCTCTCGTTCCATCGGATGC CCCGGCCTGGCAGATTCTCTTCCTGGAGCCAGATGACGGGGCCTTCCCGG TGCTGTACGCCGCTACCGCGCCCATGGACGATCTCATCAAGTGAGGATTC CTCGAGTTGATTAGCAATGAAGTTGTGATTACACTGGCAGCTGGCGGGTT GATTAGATGACTGCCCTTTTGTTCTGTTTTTGGAGTTGGTGGCGGCGCCA TGCGGTGGGGCCAACCTGAATTTGCTTGCGCTGGAGAATCCGAGGCGATT GTCTTGAAGCAGCTTGGTAGTCCTCTCTCTCTTCTGCGCCGTGACCCAAC CCCTTTTCTCTGCTGCAGCCTGCATCAACTCACCGCGGCCCAGCCCGCAT TCACCGACAGTTCACCGGTCTCCTCTCTATTTTCCTTCAGTTCGGCTTCC GCTGCCTGCCCCTGCTTTTCCGTTATCCCGGTTGACGGACTGACTATTTC TCTCCGCACTTCAGGCTCAACAAGGAGCACGACCCGCTGGCGCCGGACCA TCCGCCGCTCTACCTCGAGCCCTACTGGCTGCCCTTCGGCCTCACCATCC CCTTCGAACTGCTCGGCCCGTGGATCGGCGTCGCCGCCTCGGATGCGTCG CTGCCCCGTGATTATGTTACACGGGAGCGCAGGCTGTGGGACGCCGCGCA TATGCTGGCGGAACTGGCGCGCCTCCGCCGCCACAAGAAGGCGGATCTGC AGCTGCGGTCTTCATCATCGTCGTCGTCGCCGCTGTCGGGGGAGGATGGG GAGAAGGCGGAGAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig558:3778..7492+

>mRNA_P-wetherbeei_contig558.2.1 ID=mRNA_P-wetherbeei_contig558.2.1|Name=mRNA_P-wetherbeei_contig558.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig558:3778..7492+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGCGAGCATTGCCTTTTCACCAGATTTGATGAACTGCAACTGAA
TGCAGGTATCGGGACGCGGGCTGCGGGACGCCTCGTCCAGCGAGGGTACC
ACGTCGTGATGACGACGCGGAATAAGACAAAGGGCGAGCGCGTCTTCGGC
GAGATCAGCGACGAGTTTCCCGAGGGGGTCAAGCAGGGCGGTCGTCTGGA
GCTGATGCTATGCGACCTGAACGACCTCGAGTCGGTGGCGCAGTTCGTGC
TCGACTTCCGCAGCAAGTTTCAGCGGCTCGACGTCCTCATCAACGACGCC
GGCACGACCCTACCCGGACGCAGCAAGGACAACTACCAGCAGCTCTTCCA
GGCCGGCTTCCTCGGCGCCTTTGTTCTGACGCGCGGCCTCCTAGACTTGA
TCGAGCAGACCGATGGCGCCCGCGTTATCAACCTGTCATCGGTCATGCAC
CGCTTCGGCTCCACCGACTGGGAGGCGGCAGCGCTCGGGTGGGGCCGCGG
TGCGCTAGACGTCTGCAGCCTCAACGTGTTTCCGAACGGCTACGCGGACG
CCAAGCTCGCTATGCTCATGTTCACCGAAGAGCTGCGGCGGCGCTTCCGC
TCGGCAGGCGTGAGTGCGACGGCAATCGCCGTCCACCCGGGCACCGTCAA
GACCGCCATCTGGGGGAATGTCGGCGGTTTTGGGGCGGCCTACCTCGTGG
TCATCAAGGACATTCTCTTCCTGGAGCCAGATGACGGGGCCTTCCCGGTG
CTGTACGCCGCTACCGCGCCCATGGACGATCTCATCAAGCTCAACAAGGA
GCACGACCCGCTGGCGCCGGACCATCCGCCGCTCTACCTCGAGCCCTACT
GGCTGCCCTTCGGCCTCACCATCCCCTTCGAACTGCTCGGCCCGTGGATC
GGCGTCGCCGCCTCGGATGCGTCGCTGCCCCGTGATTATGTTACACGGGA
GCGCAGGCTGTGGGACGCCGCGCATATGCTGGCGGAACTGGCGCGCCTCC
GCCGCCACAAGAAGGCGGATCTGCAGCTGCGGTCTTCATCATCGTCGTCG
TCGCCGCTGTCGGGGGAGGATGGGGAGAAGGCGGAGAGG
back to top