mRNA_P-wetherbeei_contig55793.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55793.1.1
Unique NamemRNA_P-wetherbeei_contig55793.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1E4CHF9_9HYPH (YkuD domain-containing protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CHF9_9HYPH)

HSP 1 Score: 134 bits (337), Expect = 1.490e-35
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 IPAEQVPDTRSGPGSPLQSSWRFSLQ-------TDPRAAAPPVKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
            +P+    +TR+    PL    R +++       T PRA+AP        R+Y L  RL EI P A  RL+A+F TAK AWPP E+A + IKDEK ++LHAR  GGSW ++HRY VLAASG +GPKL+QGD+QVPEGVYG
Sbjct:   95 LPSPWSTETRAERVVPLLEPPRLAIRPPQASVWTSPRASAP-------LRDYRLARRLSEIGPGATRRLSARFGTAKVAWPPAEVAFVTIKDEKVVELHARPEGGSWKMVHRYPVLAASGKSGPKLQQGDRQVPEGVYG 226          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A101VKC3_9PROT (YkuD domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VKC3_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.700e-33
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    7 AEQVPDTRSGPGSPLQSSWRFSLQ-------TDPRA------AAPPVKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            A+++P   + P      SW   +Q       TD  A      A  P KV   +R Y+L+ RL+EISP A  R+  KF + KA WPP E++L+AIKDE++L+L++R+  G+WT IHRYRVLAASGG+GPKL +GDKQVPEG+Y
Sbjct:   92 AKELPQVAASP-----QSWTVEVQENDSEPVTDSSASRRGQVAKKPAKVR--KRRYTLRERLKEISPSARARIIKKFASMKAVWPPTEVSLVAIKDERSLELYSRSGEGAWTFIHRYRVLAASGGSGPKLIRGDKQVPEGIY 226          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2S5MSN4_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MSN4_HYPSQ)

HSP 1 Score: 127 bits (319), Expect = 7.400e-33
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  118 VPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
            +P++  SL  RL +I P A  RL AKF  AKA W P E+AL+AIKDEK L+LHAR  GGSWT IHRY VLAASG TGPKLR+GDKQVPEG+YG
Sbjct:  140 LPQKPASLTERLRQIGPTAQERLHAKFVAAKAPWRPAELALVAIKDEKVLELHARPAGGSWTFIHRYPVLAASGITGPKLRRGDKQVPEGIYG 232          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2W4KYP6_9PROT (YkuD domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KYP6_9PROT)

HSP 1 Score: 122 bits (307), Expect = 1.620e-32
Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  151 LEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            + EISP A  RLA KFE A+A WPP E+ LIAIKDEKAL+L AR  GG W  IHRY VLAASGG GPKLRQGDKQVPEG+Y
Sbjct:    1 MAEISPGANARLARKFEAAEAPWPPHEVVLIAIKDEKALELFARPEGGEWKFIHRYPVLAASGGPGPKLRQGDKQVPEGIY 81          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2W4TIV5_9PROT (YkuD domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TIV5_9PROT)

HSP 1 Score: 120 bits (300), Expect = 4.850e-31
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  127 RNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGS-WTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            R+ +L+ RL EISP A  RL  KF +AKAAWPP EIAL+AIKDEK ++L+AR    + W  +HRY VLAASGG GPKLRQGDKQVPEGVY
Sbjct:   31 RSPALEKRLAEISPGATARLWKKFSSAKAAWPPAEIALVAIKDEKVIELYARKEENTEWQFVHRYPVLAASGGPGPKLRQGDKQVPEGVY 120          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1Y1QVR2_9GAMM (Uncharacterized protein n=1 Tax=Thiothrix lacustris TaxID=525917 RepID=A0A1Y1QVR2_9GAMM)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-20
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  133 YSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            YS+  RLE+    A  RLA  F+ A  A+PP  I L+A KD K L+L+AR   G+W  +  Y + AASG TGPKLR+GDKQVPEG+Y
Sbjct:   44 YSVVQRLEQFGTAAASRLAPYFQQAGVAFPPTAITLLAFKDSKRLELYARDPQGAWQQVRAYPIQAASGITGPKLREGDKQVPEGIY 130          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A656HFA3_THINJ (ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thiothrix nivea (strain ATCC 35100 / DSM 5205 / JP2) TaxID=870187 RepID=A0A656HFA3_THINJ)

HSP 1 Score: 93.2 bits (230), Expect = 1.540e-20
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  136 SLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
            +++ RLE+    A VRLA  F+ A   +PP  IAL+A KD K L+L+A    G+W  +  Y + AASG  GPKLR+GD+QVPEG+YG
Sbjct:   42 TVEERLEQFGTAATVRLALHFQQADVPFPPAAIALLAFKDSKRLELYASNRQGAWRYVRHYPIQAASGAPGPKLREGDRQVPEGIYG 128          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1Y1QAC8_9GAMM (Uncharacterized protein n=1 Tax=Thiothrix lacustris TaxID=525917 RepID=A0A1Y1QAC8_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 2.300e-20
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  133 YSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            YS+  RLE+    A  RLA  F+ A  A+PP  I L+A KD K L+L+AR   G+W  +  Y + AASG TGPKLR+GDKQVPEG+Y
Sbjct:   41 YSVVQRLEQFGTAAASRLAPHFQQAGVAFPPTAITLLAFKDSKRLELYARDPQGAWQQVLAYPIQAASGITGPKLREGDKQVPEGIY 127          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A8B0SPD1_9GAMM (L,D-transpeptidase family protein n=1 Tax=Thiothrix fructosivorans TaxID=111770 RepID=A0A8B0SPD1_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 2.440e-20
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  106 VKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            VK+++  + YS+  RLE+    A  RLA  F+ A  A+PP  I L+A KD K L+L+AR   G+W  +  Y + AASG  GPKLR+GDKQVPEG+Y
Sbjct:   33 VKLQITSK-YSVAQRLEQFGTAASQRLAPHFQQAGVAFPPTSITLLAFKDSKRLELYARDPQGAWQQVQTYPIQAASGVLGPKLREGDKQVPEGIY 127          
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: UPI0013D174BA (L,D-transpeptidase family protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D174BA)

HSP 1 Score: 92.0 bits (227), Expect = 2.780e-20
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  136 SLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
            ++++ ++E  P A  +L   FETA  ++PP E+AL+AIK  KAL++ A ++GG+W  IH Y+V AASG  GPKL +GD+QVPEGVY
Sbjct:   38 TVQSAIDEYGPNARKKLETYFETAGVSYPPSEVALLAIKQSKALEVWA-SDGGAWKKIHTYQVQAASGKLGPKLNEGDRQVPEGVY 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E4CHF9_9HYPH1.490e-3551.08YkuD domain-containing protein n=2 Tax=unclassifie... [more]
A0A101VKC3_9PROT1.700e-3348.59YkuD domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A2S5MSN4_HYPSQ7.400e-3367.74Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A2W4KYP6_9PROT1.620e-3272.84YkuD domain-containing protein n=1 Tax=Proteobacte... [more]
A0A2W4TIV5_9PROT4.850e-3166.67YkuD domain-containing protein n=1 Tax=Proteobacte... [more]
A0A1Y1QVR2_9GAMM1.240e-2052.87Uncharacterized protein n=1 Tax=Thiothrix lacustri... [more]
A0A656HFA3_THINJ1.540e-2049.43ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thiothr... [more]
A0A1Y1QAC8_9GAMM2.300e-2052.87Uncharacterized protein n=1 Tax=Thiothrix lacustri... [more]
A0A8B0SPD1_9GAMM2.440e-2048.96L,D-transpeptidase family protein n=1 Tax=Thiothri... [more]
UPI0013D174BA2.780e-2051.16L,D-transpeptidase family protein n=1 Tax=Spartini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55793contigP-wetherbeei_contig55793:126..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog870187.Thini_3083
Preferred nameyafK
PFAMsYkuD
Model size396
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.53e-21
EggNOG OGsCOG3034@1|root,COG3034@2|Bacteria,1MXY6@1224|Proteobacteria,1RPXT@1236|Gammaproteobacteria
DescriptionErfK YbiS YcfS YnhG family protein
Cds size396
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.4841998-CDS-P-wetherbeei_contig55793:125..5211683186830.4841998-CDS-P-wetherbeei_contig55793:125..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55793 126..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55793.1.1prot_P-wetherbeei_contig55793.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55793 126..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55793.1.1

>prot_P-wetherbeei_contig55793.1.1 ID=prot_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
IPAEQVPDTRSGPGSPLQSSWRFSLQTDPRAAAPPVKVEVPRRNYSLKTR
LEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSW
TLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG
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mRNA from alignment at P-wetherbeei_contig55793:126..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55793.1.1 ID=mRNA_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55793:126..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCCAGCTGAACAAGTGCCCGATACCCGCTCCGGCCCGGGATCACCATT GCAGTCGAGTTGGCGCTTTTCACTGCAAACCGATCCTCGGGCCGCCGCGC CGCCGGTCAAGGTCGAAGTCCCCCGGCGCAACTATTCTCTCAAAACGCGC CTCGAAGAGATTTCGCCGGAAGCGATCGTTCGCCTGGCGGCCAAGTTCGA GACTGCGAAAGCGGCATGGCCGCCCGGCGAGATCGCCCTGATCGCCATCA AGGATGAAAAGGCTCTCGATCTGCACGCGCGAACGAACGGCGGTTCCTGG ACGCTGATCCATCGCTATCGCGTACTGGCCGCGAGTGGCGGCACGGGCCC CAAGCTGCGGCAAGGCGACAAGCAGGTGCCGGAGGGCGTGTATGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55793:126..521+

>mRNA_P-wetherbeei_contig55793.1.1 ID=mRNA_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55793:126..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCCAGCTGAACAAGTGCCCGATACCCGCTCCGGCCCGGGATCACCATT
GCAGTCGAGTTGGCGCTTTTCACTGCAAACCGATCCTCGGGCCGCCGCGC
CGCCGGTCAAGGTCGAAGTCCCCCGGCGCAACTATTCTCTCAAAACGCGC
CTCGAAGAGATTTCGCCGGAAGCGATCGTTCGCCTGGCGGCCAAGTTCGA
GACTGCGAAAGCGGCATGGCCGCCCGGCGAGATCGCCCTGATCGCCATCA
AGGATGAAAAGGCTCTCGATCTGCACGCGCGAACGAACGGCGGTTCCTGG
ACGCTGATCCATCGCTATCGCGTACTGGCCGCGAGTGGCGGCACGGGCCC
CAAGCTGCGGCAAGGCGACAAGCAGGTGCCGGAGGGCGTGTATGGG
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