mRNA_P-wetherbeei_contig55793.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1E4CHF9_9HYPH (YkuD domain-containing protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CHF9_9HYPH) HSP 1 Score: 134 bits (337), Expect = 1.490e-35 Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 1 IPAEQVPDTRSGPGSPLQSSWRFSLQ-------TDPRAAAPPVKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
+P+ +TR+ PL R +++ T PRA+AP R+Y L RL EI P A RL+A+F TAK AWPP E+A + IKDEK ++LHAR GGSW ++HRY VLAASG +GPKL+QGD+QVPEGVYG
Sbjct: 95 LPSPWSTETRAERVVPLLEPPRLAIRPPQASVWTSPRASAP-------LRDYRLARRLSEIGPGATRRLSARFGTAKVAWPPAEVAFVTIKDEKVVELHARPEGGSWKMVHRYPVLAASGKSGPKLQQGDRQVPEGVYG 226
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A101VKC3_9PROT (YkuD domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VKC3_9PROT) HSP 1 Score: 129 bits (323), Expect = 1.700e-33 Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 1
Query: 7 AEQVPDTRSGPGSPLQSSWRFSLQ-------TDPRA------AAPPVKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
A+++P + P SW +Q TD A A P KV +R Y+L+ RL+EISP A R+ KF + KA WPP E++L+AIKDE++L+L++R+ G+WT IHRYRVLAASGG+GPKL +GDKQVPEG+Y
Sbjct: 92 AKELPQVAASP-----QSWTVEVQENDSEPVTDSSASRRGQVAKKPAKVR--KRRYTLRERLKEISPSARARIIKKFASMKAVWPPTEVSLVAIKDERSLELYSRSGEGAWTFIHRYRVLAASGGSGPKLIRGDKQVPEGIY 226
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2S5MSN4_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MSN4_HYPSQ) HSP 1 Score: 127 bits (319), Expect = 7.400e-33 Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 118 VPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
+P++ SL RL +I P A RL AKF AKA W P E+AL+AIKDEK L+LHAR GGSWT IHRY VLAASG TGPKLR+GDKQVPEG+YG
Sbjct: 140 LPQKPASLTERLRQIGPTAQERLHAKFVAAKAPWRPAELALVAIKDEKVLELHARPAGGSWTFIHRYPVLAASGITGPKLRRGDKQVPEGIYG 232
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2W4KYP6_9PROT (YkuD domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KYP6_9PROT) HSP 1 Score: 122 bits (307), Expect = 1.620e-32 Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 151 LEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
+ EISP A RLA KFE A+A WPP E+ LIAIKDEKAL+L AR GG W IHRY VLAASGG GPKLRQGDKQVPEG+Y
Sbjct: 1 MAEISPGANARLARKFEAAEAPWPPHEVVLIAIKDEKALELFARPEGGEWKFIHRYPVLAASGGPGPKLRQGDKQVPEGIY 81
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A2W4TIV5_9PROT (YkuD domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TIV5_9PROT) HSP 1 Score: 120 bits (300), Expect = 4.850e-31 Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 127 RNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGS-WTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
R+ +L+ RL EISP A RL KF +AKAAWPP EIAL+AIKDEK ++L+AR + W +HRY VLAASGG GPKLRQGDKQVPEGVY
Sbjct: 31 RSPALEKRLAEISPGATARLWKKFSSAKAAWPPAEIALVAIKDEKVIELYARKEENTEWQFVHRYPVLAASGGPGPKLRQGDKQVPEGVY 120
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1Y1QVR2_9GAMM (Uncharacterized protein n=1 Tax=Thiothrix lacustris TaxID=525917 RepID=A0A1Y1QVR2_9GAMM) HSP 1 Score: 93.2 bits (230), Expect = 1.240e-20 Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 133 YSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
YS+ RLE+ A RLA F+ A A+PP I L+A KD K L+L+AR G+W + Y + AASG TGPKLR+GDKQVPEG+Y
Sbjct: 44 YSVVQRLEQFGTAAASRLAPYFQQAGVAFPPTAITLLAFKDSKRLELYARDPQGAWQQVRAYPIQAASGITGPKLREGDKQVPEGIY 130
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A656HFA3_THINJ (ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thiothrix nivea (strain ATCC 35100 / DSM 5205 / JP2) TaxID=870187 RepID=A0A656HFA3_THINJ) HSP 1 Score: 93.2 bits (230), Expect = 1.540e-20 Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 136 SLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVYG 396
+++ RLE+ A VRLA F+ A +PP IAL+A KD K L+L+A G+W + Y + AASG GPKLR+GD+QVPEG+YG
Sbjct: 42 TVEERLEQFGTAATVRLALHFQQADVPFPPAAIALLAFKDSKRLELYASNRQGAWRYVRHYPIQAASGAPGPKLREGDRQVPEGIYG 128
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A1Y1QAC8_9GAMM (Uncharacterized protein n=1 Tax=Thiothrix lacustris TaxID=525917 RepID=A0A1Y1QAC8_9GAMM) HSP 1 Score: 92.4 bits (228), Expect = 2.300e-20 Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 133 YSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
YS+ RLE+ A RLA F+ A A+PP I L+A KD K L+L+AR G+W + Y + AASG TGPKLR+GDKQVPEG+Y
Sbjct: 41 YSVVQRLEQFGTAAASRLAPHFQQAGVAFPPTAITLLAFKDSKRLELYARDPQGAWQQVLAYPIQAASGITGPKLREGDKQVPEGIY 127
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: A0A8B0SPD1_9GAMM (L,D-transpeptidase family protein n=1 Tax=Thiothrix fructosivorans TaxID=111770 RepID=A0A8B0SPD1_9GAMM) HSP 1 Score: 92.4 bits (228), Expect = 2.440e-20 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 106 VKVEVPRRNYSLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
VK+++ + YS+ RLE+ A RLA F+ A A+PP I L+A KD K L+L+AR G+W + Y + AASG GPKLR+GDKQVPEG+Y
Sbjct: 33 VKLQITSK-YSVAQRLEQFGTAASQRLAPHFQQAGVAFPPTSITLLAFKDSKRLELYARDPQGAWQQVQTYPIQAASGVLGPKLREGDKQVPEGIY 127
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Match: UPI0013D174BA (L,D-transpeptidase family protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D174BA) HSP 1 Score: 92.0 bits (227), Expect = 2.780e-20 Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 136 SLKTRLEEISPEAIVRLAAKFETAKAAWPPGEIALIAIKDEKALDLHARTNGGSWTLIHRYRVLAASGGTGPKLRQGDKQVPEGVY 393
++++ ++E P A +L FETA ++PP E+AL+AIK KAL++ A ++GG+W IH Y+V AASG GPKL +GD+QVPEGVY
Sbjct: 38 TVQSAIDEYGPNARKKLETYFETAGVSYPPSEVALLAIKQSKALEVWA-SDGGAWKKIHTYQVQAASGKLGPKLNEGDRQVPEGVY 122 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55793.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55793.1.1 >prot_P-wetherbeei_contig55793.1.1 ID=prot_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp IPAEQVPDTRSGPGSPLQSSWRFSLQTDPRAAAPPVKVEVPRRNYSLKTRback to top mRNA from alignment at P-wetherbeei_contig55793:126..521+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55793.1.1 ID=mRNA_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55793:126..521+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55793:126..521+ >mRNA_P-wetherbeei_contig55793.1.1 ID=mRNA_P-wetherbeei_contig55793.1.1|Name=mRNA_P-wetherbeei_contig55793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55793:126..521+ (Phaeothamnion wetherbeei SAG_119_79)back to top |