mRNA_P-wetherbeei_contig5573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5573.1.1 vs. uniprot
Match: D7G643_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G643_ECTSI) HSP 1 Score: 183 bits (464), Expect = 6.440e-44 Identity = 233/806 (28.91%), Postives = 311/806 (38.59%), Query Frame = 1
Query: 1 HVAWKGAREALMACATYGRGYEGLSAKEIAALVKIYGAQRIQATWRGQAPRRRFSRTLLAIGKALRCERELLQRLRRRAFEEWVRCHRAQLDMFGSIRWRFHRWRRXXXXXXXXXXXXXXXXXXXXXXXXXXNARRSGRDKARLLKRVWRTYVILRHFREWDGVVAQHHRPLKRAEALARVWQRXXXXXXXXXXXXXXXXXXXXXXAWLGGGLRLRQRLLLRLAQATAAVWRYAAAARRRAREGAILHFRSYYLLSEIARRRVKGALGGLLLPPSTNFAAGAXXXXXXXXXXXXXXXXXXXISGASGTGAGA----PAVPPFVSDSSAGRTSVPGAAGAXXXXXXXXXXXXXXXXXXXXSGTGNVSMGKDGXXXXXXXXXXXXXXXXSVFFSGSDGSVDSQREAEAPPLLLVSGRPHPDALFLAPPLPDIPGDVDALSICLVSLNMAAACHTVWQHYSKKARLAAVANFQIYRRAAPYVLAALRRNAQWRRRRRCAVHHDARRVQRLFLRAWRAAARQRVLMRKEIVTP---------RSSMLSDEEEEKNAVAV-----AAAAVAGXXXXXXXXXXXXXXXXXXICSEGRNPYDEDCAERRLQADAVAVAVAAGRVV--LAGQRRRRRLDAXXXXXXXXXXXXXXXXXXKFMRDVGRDTEEARRRAGEFAEKFLEYAAANLLRTMQGIHAELRRRRDDDLLRQVLRGWRLVRLERQSVSLCNRRRLRRWLAICGRLRYLHRGMPVFATLRTKRGVWSAWLSAMSDRYQFTTPGLLIDLRRRRLLLAAYDKLLADRGIVAPGRYAP 2358
H+ + ++AL+ACA YGR ++ L+A ++ ++ Y AQRI A WRG PRRRF+ +LA+ + + ER + RR AF W HR+++++ R F RWR N R S RDKA+ L++V+ T +++RHFR W+ V R + RA+ + RL+ + + R+R G + +G XXXXX AS T G A P S + R V G A K XXXXXXXXXXXX P + V GRP+ +F D GDV AC + H+ KK L A NF +YRR P VLA LR A R+R R A + DARRVQ+ +L+AW Q +R+ I R+SM EE + + AA A A G N DED RR Q + ++ + R+V + + DA KF+ G A +A F F +YAA NL+ + I + R LR+ LR WR R SV L NR+RLR WL ICGRLRYL RGMP+F LR K V+ L + R + TP L LRRRR LL Y +LL +RG V PGRYAP
Sbjct: 620 HILLRRPKDALVACAKYGRDFQNLTAAQVVLALRAYAAQRIHAQWRGWGPRRRFAPKILALRRLVERERAIRVARRREAFGGWKAAHRSKMELMRGTRRAFRRWRIESERMAKTSALFRGTFWPLYVWRRWANYRISSRDKAKFLRKVYLTVILVRHFRAWNAVTETGQRLVGRADRASDT--------------------------------RLKTKA------------------------------------DRLFRQRPGGHHSRHTTHGGSGSPSGPSARRDDAFDNRNHGXXXXXXXXASRTSLGGMPEESATEPSDSPRNESRVGVEGDRTA-----------------------------KPQNSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIAVLGRPN-YVVFPGLRDTDFGGDVP-------DGGATFACEVLRDHFEKKEVLKARVNFLLYRRLGPQVLARLRIKANERQRSRYAAYVDARRVQKKYLKAWHFVVIQTAAVRRGITGEAMVMTLDQVRASMRKGSLEEDDVTGMESHPLAAGATANFAGGVGATLGESTELGSGDLLCGVNQLDEDRKIRRRQVERTSIR--SSRLVDRTVSLKEQSVQDAENTAAWVSARKVRERALAKFLIREGARARSADEKAQVFVAGFQQYAAENLVNVVARIFYTVVDGRKSVTLRKTLRQWRSWYNIRMSVQLYNRQRLRNWLRICGRLRYLWRGMPLFRLLRVKWSVFHRLLELTNHRMLYGTPDLPATLRRRRELLLDYSRLLQERGFV-PGRYAP 1317
BLAST of mRNA_P-wetherbeei_contig5573.1.1 vs. uniprot
Match: A0A6H5JB91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB91_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.120e-37 Identity = 244/875 (27.89%), Postives = 332/875 (37.94%), Query Frame = 1
Query: 1 HVAWKGAREALMACATYGRGYEGLSAKEIAALVKIYGAQRIQATWRGQAPRRRFSRTLLAIGKALRCERELLQRLRRRAFEEWVRCHRAQLDMFGSIRWRFHRWRRXXXXXXXXXXXXXXXXXXXXXXXXXXNARRSGRDK--------------------ARLLKRVWRTYVILRHFREWDGVVAQHHRPLKRAEALARVWQRXXXXXXXXXXXXXXXXXXXXXXAWLGGGLRLRQRLLLRLAQATAAVWRYAAAARRRAREGAILHFRSYYLLSEIARRR-VKGALGGLLLPPSTNFAAGAXXXXXXXXXXXXXXXXXXXISGASGTGAGAPAVPPFVSDS---SAGRTSVPGAAGAXXXXXXXXXXXXXXXXXXXXSGTGNVSMGKDGXXXXXXXXXXXXXXXXSVFFSGSDGSVDSQREAEAPPLLLVSGRPHPDALFLAPPLPDIPGDVDALSICLVSLNMAAACHTVWQHYSKKARLAAVANFQIYRRAAPYVLAALRRNAQWRRRRRCAVHHDARRVQRLFLRAWR------AAARQRVLMRKEIVT---PRSSMLSDEEEEKNAVAV-----AAAAVAGXXXXXXXXXXXXXXXXXXICSEGRNPYDEDCAERRLQADAVAVAVAA----------GRVVLAGQ----RRRRRLDAXXXXXXXXXXXXXXXXXXKFMRDVGRDTEEARRRA-------------------------------------GEFAEKFLEYAAANLLRTMQGIHAELRRRRDDDLLRQVLRGWRLVRLERQSVSLCNRRRLRRWLAICGRLRYLHRGMPVFATLRTKRGVWSAWLSAMSDRYQFTTPGLLIDLRRRRLLLAAYDKLLADRGIVAPGRYAP 2358
H+ + ++AL+ACA YGR ++ L+A ++ ++ Y AQRIQA WRG PRRRF+ +LA+ + + ER + RR AF W HR+++++ R F RWR N R S RDK A+ L+ V+ T +++RHFR W+ V R + RA+ + RL ++RY A AR + HFRSYYLL E+ RR + GG L + G SG+ +G A D+ SA A+ SG G V + XXXXXXXXXXXX PP+ ++ GRP+ + P L D D + AC + H+ KK L A NF +YR VLA LR A R+R R A + DARRVQ+ +L+AW AA R+ V ++T R+SM EE + + AA A A G N DED RR Q + ++ + ++VL + + + DA KF+ G A +A G A + +YAA NL+ + I + R LR+ LR WR R SV L NR+RLR WL ICGRLRYL RGMP+F LR K V+ L + R + TP L LRRRR LL Y +LL +RG V PGRYAP
Sbjct: 560 HILLRRPKDALVACAKYGRDFQNLTAAQVVLALRAYAAQRIQAQWRGWGPRRRFAPKILALRRLVERERAIRVARRREAFCGWKAAHRSRMELMRGTRRAFLRWRIESERMAKTSALFRGTFWPLYVWRRWANYRISSRDKVWRYFLSKSRVTTVMFGGGQAKFLREVYLTVILVRHFRAWNVVTGTGQRLVGRADRASNT----------------------------------------RLKTKADRLFRYWAFARATCARRSDAHFRSYYLLGEMDRRHTLTDKRGGRHL----HGRGDNKGNNKRVRQRPGGHHSRYTTHGGSGSRSGLSAGGDDAFDNRNHSAXXXXXXNASRTSRGGTPEESATEPSNSPRNESGVG-VEGDRTTKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPIAVL-GRPN---YVVFPGLRDTNFGED-----VPDGGATFACEVLRDHFEKKEVLKARVNFLLYR-----VLARLRIKANERQRSRYAAYIDARRVQKKYLKAWHFVIVQTAAVRRGVTGEVMVMTLNQVRASMQKGSPEEGDLTGMEGHPLAAGATANFAGGAGATLGECTELGSGDLLCGVNQLDEDRKIRRRQVERTSIRSSRVCTWDRTPCLEQLVLVDRTVSLKEQSVQDAENTAAWVSARKVRERALAKFLIREGARARSADEKAQVFVAGFKARATATCPPSVLARFLFRSNQSSLDLDRGGAMAPREEQYAAENLVNVVARIFYTVVDGRRSVTLRKTLRQWRSWYNIRLSVQLYNRQRLRNWLRICGRLRYLWRGMPLFRVLRVKWSVFHRLLELTNHRMLYGTPDLPATLRRRRELLLDYSRLLQERGFV-PGRYAP 1374 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5573.1.1 >prot_P-wetherbeei_contig5573.1.1 ID=prot_P-wetherbeei_contig5573.1.1|Name=mRNA_P-wetherbeei_contig5573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=786bp HVAWKGAREALMACATYGRGYEGLSAKEIAALVKIYGAQRIQATWRGQAPback to top mRNA from alignment at P-wetherbeei_contig5573:749..3800+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5573.1.1 ID=mRNA_P-wetherbeei_contig5573.1.1|Name=mRNA_P-wetherbeei_contig5573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3052bp|location=Sequence derived from alignment at P-wetherbeei_contig5573:749..3800+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5573:749..3800+ >mRNA_P-wetherbeei_contig5573.1.1 ID=mRNA_P-wetherbeei_contig5573.1.1|Name=mRNA_P-wetherbeei_contig5573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2358bp|location=Sequence derived from alignment at P-wetherbeei_contig5573:749..3800+ (Phaeothamnion wetherbeei SAG_119_79)back to top |