mRNA_P-wetherbeei_contig55570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55570.1.1
Unique NamemRNA_P-wetherbeei_contig55570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: A0A523PHN8_9PROT (VWA domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PHN8_9PROT)

HSP 1 Score: 129 bits (324), Expect = 1.070e-31
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVST-LAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMV-ALLCGAGAPQSARADWWRTPDQAGQAAFEQQDYQGAA 522
            +TDG     + RA+   A+++  LSV G+GT++GAP+PD SG FI  A G +V+  L ++ L+ LA  GRGIY   R DD DV   L  + ++ H  NA R   L   +WRE GPWLLL L+P A LAFRRGVL+++V A L     P +A ADWW T DQA +  FEQ D+ GAA
Sbjct:  201 VTDGLQLAELDRAKKLIANSNARLSVFGVGTSEGAPIPDRSGGFITDAGGNIVVEPLRSSPLQELARVGRGIYQSIRNDDQDVEVFLRLWANNLHQRNA-RTTDLFAERWREFGPWLLLGLIPFAPLAFRRGVLMVVVTAGLAATVFPHTADADWWVTADQAARRRFEQGDFAGAA 375          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: UPI001BBE0659 (Tetratricopeptide repeat protein n=1 Tax=Methylomonas sp. TaxID=418 RepID=UPI001BBE0659)

HSP 1 Score: 125 bits (315), Expect = 3.240e-31
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA-DW---WRTPDQAGQAAFEQQDYQGAA 522
            +TDGAD D   +A        Y LSVL +G+ +GAP+P   G F+K A G +V++ LD+A+L  LA DG GI+    ADD D+  L    +     +  +   L   QW E GPWLLL +LP AAL FR+G+L L  ALLC    P+ A A DW   W+TPDQ GQ AF QQ +Q AA
Sbjct:    9 VTDGADADGARQAGRLLGG--YRLSVLALGSPEGAPIPLPGGGFLKDARGNIVLARLDSAALSQLAADGHGIFQQVTADDADIERLGGLFNQVKRNDPNQKTDLMLEQWHEAGPWLLLLVLPWAALHFRKGLLAL--ALLCLLPLPRPASALDWHSLWQTPDQRGQQAFRQQQFQQAA 182          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: F9ZXX9_METMM (Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Methylomonas methanica (strain MC09) TaxID=857087 RepID=F9ZXX9_METMM)

HSP 1 Score: 123 bits (309), Expect = 1.260e-29
Identity = 82/178 (46.07%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA-DW---WRTPDQAGQAAFEQQDYQGAA 522
            +TDGAD D++ +A+       Y LSVL MGT +GAP+P   G F+K + G +V++ LD+A L  LA  G GIY    ADD DV  L        + ++     L   QW+EVGPWLLL +LP AAL FR+G+L L   LLC    P+ A A DW   W T DQ  Q AF+QQ YQ AA
Sbjct:  198 VTDGADADSIHQAKRLLGD--YRLSVLAMGTPEGAPIP-VPGGFLKDSQGNIVVARLDSAELSQLASTGHGIYQPVTADDSDVDRLGSLFSQVKSNDSAEKTNLLLEQWKEVGPWLLLLVLPWAALRFRKGLLTL--GLLCLLPLPKPAAALDWQSLWHTQDQRAQQAFQQQQYQQAA 370          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: UPI00177E0245 (VWA domain-containing protein n=1 Tax=Methylomonas fluvii TaxID=1854564 RepID=UPI00177E0245)

HSP 1 Score: 122 bits (306), Expect = 3.130e-29
Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA-DW---WRTPDQAGQAAFEQQDYQGAA 522
            +TDG D D   +A        Y LSVL MGT +GAP+      F+K +NG++V++ LD A+L  LA  GRGIY    A+D DV  L    +     N      L   QW E GPWLLL +LP AAL FR+G   L++ALLC    P+++ A DW   W+TPDQ  + AFEQQ YQ AA
Sbjct:  199 VTDGVDADVAEQAEHWLGD--YRLSVLAMGTPEGAPIQLKGAGFVKDSNGSIVVAKLDEAALSTLAQHGRGIYQPVTANDADVENLGRLFNSAETGNENLDNNLLLQQWDEKGPWLLLLVLPWAALQFRKG---LLLALLCLLPLPKNSYALDWQSLWQTPDQRAKQAFEQQQYQQAA 371          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: A0A522VMV2_9GAMM (VWA domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A522VMV2_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 8.540e-29
Identity = 79/170 (46.47%), Postives = 102/170 (60.00%), Query Frame = 1
Query:   64 YTLSVLGMGTADGAPV-------------PDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAAN-AERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARADW---WRTPDQAGQAAFEQQDYQGAA 522
            Y +SVLG+GTA GAPV             P   G F+K  +GA+++S L+AA+L+ALA  G G YL    D+ D+ +L    D   AA  AE   +    QW+++GPWLLLPLLPLAALAFRRGVLV+ V +L    +  +A  +W   W+TPDQ  Q A  QQDY  AA
Sbjct:  218 YAVSVLGVGTAQGAPVAAPGGGFPEALVIPRGRGGFLKTDDGAIIVSKLNAAALQALATAGGGRYLAVANDNSDIQSLQQSFDRRMAAQGAEDAGQTLLDQWQDMGPWLLLPLLPLAALAFRRGVLVMAVLVLALPWSNDAAAWEWRDLWQTPDQQAQQAMRQQDYAAAA 387          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: A0A1W9JW37_9PROT (VWFA domain-containing protein n=1 Tax=Proteobacteria bacterium ST_bin11 TaxID=1978759 RepID=A0A1W9JW37_9PROT)

HSP 1 Score: 120 bits (302), Expect = 1.120e-28
Identity = 79/178 (44.38%), Postives = 103/178 (57.87%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA-DW---WRTPDQAGQAAFEQQDYQGAA 522
            +TDG D +   +A        Y LSVLGMGTA+GAP+      F+K +NGA+V++ LD  +L  LA  GRGIY    A+D DV  L    +   A +      L   QW E GPWLLL ++P AAL FR+G   L++A+LC    P+++ A DW   W+TPDQ    AFEQQ YQ AA
Sbjct:  199 VTDGVDANVAEQAEHWVGD--YRLSVLGMGTAEGAPIQLQGAGFLKDSNGAIVLAKLDETALSTLANHGRGIYQPVTANDADVENLGRLFNSADADSKNLDSNLLLQQWDEKGPWLLLLVIPWAALQFRKG---LLLAVLCLLPLPKNSYALDWQSLWQTPDQQALQAFEQQQYQQAA 371          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: A0A661GCB4_9GAMM (VWFA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GCB4_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 2.170e-28
Identity = 75/168 (44.64%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA--DWWRTPDQAGQAAFE 498
            ITDG    A  RA +    A YTLSVLG+GT DGAP+P A G F+   +G L +  L+ +SL+ LA  G G Y    ADD D+  L   L  +  + AE    LAT +W+E GPWLLL L+PLAA+AFRRG+++++V  L     P  A    D W+T DQ  Q   E
Sbjct:  198 ITDGGTSPAAERAAEELRDAGYTLSVLGVGTKDGAPIPRAGGGFVTDRSGNLAVPRLEESSLRRLAASGGGRYATMTADDSDIDAL---LSGETGSGAESDNALATDRWQEEGPWLLLLLVPLAAMAFRRGLVLVLVVFLMPVTKPAHASVWDDLWQTRDQQAQQLLE 362          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: A0A7C1Z3E6_9GAMM (VWA domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7C1Z3E6_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 2.280e-28
Identity = 81/181 (44.75%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERL---EKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARA----DWWRTPDQAGQAAFEQQDYQGAA 522
            I DG + +AMA+A+    +  Y LS+LG+GTA+GAP+   SG F+K   G +V+  LD++ L +LA  G GIY    +DDGD+  L   + + +AA  E+     K    QW E GPWLLL LLPLAAL FR+G+L++ V +L     PQ + A    D W+TPDQ GQ AF+ Q Y+ AA
Sbjct:  200 IADGINANAMAQAKSILGN--YKLSILGIGTAEGAPIKLTSGGFLKDEQGNIVVPKLDSSQLASLAQIGDGIYQTISSDDGDIQNL---IANSNAAVTEQTMEDSKHLVEQWAEQGPWLLLLLLPLAALYFRKGLLIVPVIVLMNY--PQDSYAFEWQDLWKTPDQQGQQAFDHQQYEQAA 373          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: Q0EXM8_9PROT (TPR domain protein n=3 Tax=Mariprofundus ferrooxydans TaxID=314344 RepID=Q0EXM8_9PROT)

HSP 1 Score: 119 bits (299), Expect = 3.390e-28
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAAN--AERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVA--LLCGAGAPQSARADWWRTPDQAGQAAFEQQDYQGAA 522
            +TDG D DA A A++ AA A + LS+LG+GT +GAP+P + G F++   G +V+  L    L ALA  G GIY   RADD DV  L       H A    E    + T QWRE GPWL+L +LPL AL FRRGVL+L++   L   + A  S   D W+TPDQ GQA  +Q   + AA
Sbjct:  202 LTDGVDADATAVAKELAA-AGHHLSILGVGTTEGAPIPLSDGGFLQDKQGNIVIPRLQKEQLAALAAAGGGIYQQMRADDLDVERLPGL----HPARDTGETRSHMQTDQWREEGPWLVLLMLPLLALVFRRGVLLLLIVVPLAMPSQAHASTWRDLWQTPDQQGQALMQQGSAKAAA 374          
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Match: UPI00131CCF0D (VWA domain-containing protein n=1 Tax=Paraglaciecola sp. L1A13 TaxID=2686359 RepID=UPI00131CCF0D)

HSP 1 Score: 119 bits (299), Expect = 3.430e-28
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 1
Query:    1 ITDGADEDAMARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDAASLKALAGDGRGIYLDSRADDGDVSTLAHY--LDDDHAANAERLEKLATSQWREVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARADWW----RTPDQAGQAAFEQQDYQGAA 522
            ITDG + + +       AS+SY LSVL +GTADGAP+   +GDF+K   GA+V+  L A++L+ LA  G G Y+  R DD D+  L +   L  +     E  EK    +W+E+GP+LLL L+PLAA  FRRG+L L    L   G   +A ADWW    +T DQ GQ AF+Q D+  AA
Sbjct:  202 ITDGIENNQVTEVSKLLASSSYRLSVLAVGTADGAPIQLINGDFLKDGTGAVVVPRLRASNLQTLARKGGGRYVTMRTDDSDIEYLKNQTRLSSEQEKENEADEKFG-DKWQEMGPYLLLLLVPLAAYGFRRGLLGLFALFLLFPGYTPTASADWWDDMWQTKDQQGQHAFKQGDFNTAA 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523PHN8_9PROT1.070e-3147.73VWA domain-containing protein n=1 Tax=Proteobacter... [more]
UPI001BBE06593.240e-3145.51Tetratricopeptide repeat protein n=1 Tax=Methylomo... [more]
F9ZXX9_METMM1.260e-2946.07Tetratricopeptide TPR_1 repeat-containing protein ... [more]
UPI00177E02453.130e-2944.94VWA domain-containing protein n=1 Tax=Methylomonas... [more]
A0A522VMV2_9GAMM8.540e-2946.47VWA domain-containing protein n=1 Tax=Methylococca... [more]
A0A1W9JW37_9PROT1.120e-2844.38VWFA domain-containing protein n=1 Tax=Proteobacte... [more]
A0A661GCB4_9GAMM2.170e-2844.64VWFA domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A7C1Z3E6_9GAMM2.280e-2844.75VWA domain-containing protein n=2 Tax=root TaxID=1... [more]
Q0EXM8_9PROT3.390e-2845.51TPR domain protein n=3 Tax=Mariprofundus ferrooxyd... [more]
UPI00131CCF0D3.430e-2843.89VWA domain-containing protein n=1 Tax=Paraglacieco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55570contigP-wetherbeei_contig55570:2..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog857087.Metme_0108
PFAMsTPR_1,TPR_2,VWA_2
Model size522
Max annot lvl135618|Methylococcales
KEGG koko:K07114
KEGG TC1.A.13.2.2,1.A.13.2.3
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.39e-28
EggNOG OGsCOG0457@1|root,COG2304@1|root,COG0457@2|Bacteria,COG2304@2|Bacteria,1MW51@1224|Proteobacteria,1RMD3@1236|Gammaproteobacteria,1XEC7@135618|Methylococcales
Descriptionvon Willebrand factor, type A
Cds size495
COG categoryS
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.5894394-UTR-P-wetherbeei_contig55570:1..281683186827.5894394-UTR-P-wetherbeei_contig55570:1..28Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55570 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.6021078-CDS-P-wetherbeei_contig55570:28..5231683186827.6021078-CDS-P-wetherbeei_contig55570:28..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55570 29..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55570.1.1prot_P-wetherbeei_contig55570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55570 29..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55570.1.1

>prot_P-wetherbeei_contig55570.1.1 ID=prot_P-wetherbeei_contig55570.1.1|Name=mRNA_P-wetherbeei_contig55570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MARARDAAASASYTLSVLGMGTADGAPVPDASGDFIKGANGALVMSHLDA
ASLKALAGDGRGIYLDSRADDGDVSTLAHYLDDDHAANAERLEKLATSQW
REVGPWLLLPLLPLAALAFRRGVLVLMVALLCGAGAPQSARADWWRTPDQ
AGQAAFEQQDYQGAA
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mRNA from alignment at P-wetherbeei_contig55570:2..523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55570.1.1 ID=mRNA_P-wetherbeei_contig55570.1.1|Name=mRNA_P-wetherbeei_contig55570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55570:2..523+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACCGACGGCGCCGACGAGGATGCCATGGCGCGTGCGCGCGACGCTGC AGCGTCGGCCAGCTATACCCTGAGCGTGCTCGGCATGGGCACTGCCGACG GTGCGCCGGTGCCCGATGCCAGCGGTGATTTCATCAAGGGTGCCAATGGT GCGCTGGTGATGAGTCATCTCGATGCCGCGAGTCTCAAAGCCCTCGCTGG CGATGGTCGCGGCATCTACCTCGACTCGCGCGCCGATGATGGCGACGTCA GTACCCTCGCCCACTATCTCGATGACGATCATGCGGCCAACGCCGAGCGC CTTGAGAAACTCGCTACCAGTCAGTGGCGCGAAGTCGGGCCGTGGCTGCT GTTGCCCTTGTTGCCGCTCGCCGCACTGGCGTTCCGGCGCGGCGTGCTGG TGCTGATGGTGGCGCTGCTGTGTGGCGCTGGCGCGCCGCAGTCGGCCCGC GCCGATTGGTGGCGCACCCCGGATCAGGCCGGCCAGGCGGCCTTTGAACA GCAGGACTACCAGGGCGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55570:2..523+

>mRNA_P-wetherbeei_contig55570.1.1 ID=mRNA_P-wetherbeei_contig55570.1.1|Name=mRNA_P-wetherbeei_contig55570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig55570:2..523+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTGCGCGCGACGCTGCAGCGTCGGCCAGCTATACCCTGAGCGT
GCTCGGCATGGGCACTGCCGACGGTGCGCCGGTGCCCGATGCCAGCGGTG
ATTTCATCAAGGGTGCCAATGGTGCGCTGGTGATGAGTCATCTCGATGCC
GCGAGTCTCAAAGCCCTCGCTGGCGATGGTCGCGGCATCTACCTCGACTC
GCGCGCCGATGATGGCGACGTCAGTACCCTCGCCCACTATCTCGATGACG
ATCATGCGGCCAACGCCGAGCGCCTTGAGAAACTCGCTACCAGTCAGTGG
CGCGAAGTCGGGCCGTGGCTGCTGTTGCCCTTGTTGCCGCTCGCCGCACT
GGCGTTCCGGCGCGGCGTGCTGGTGCTGATGGTGGCGCTGCTGTGTGGCG
CTGGCGCGCCGCAGTCGGCCCGCGCCGATTGGTGGCGCACCCCGGATCAG
GCCGGCCAGGCGGCCTTTGAACAGCAGGACTACCAGGGCGCGGCG
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