mRNA_P-wetherbeei_contig55566.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55566.1.1
Unique NamemRNA_P-wetherbeei_contig55566.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A3B9NXU9_9PROT (DUF218 domain-containing protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A3B9NXU9_9PROT)

HSP 1 Score: 158 bits (399), Expect = 2.810e-45
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y  APEYG DTVS  TLER+R+ A+LQR +G PI+ +GGKP   D+SEAAQMK  L Q+F   V+W E  S NT E+AR +R  L QA IDRI LVTHA HM RA  AF+ AGFRVV A T ++T +   +L F+P+A  L  S+    E++G+ WY L+
Sbjct:   89 YFHAPEYGGDTVSIYTLERLRFAAKLQRETGKPILTTGGKPLGNDSSEAAQMKEVLEQEFVVPVQWTEGASNNTFENARLSREMLKQAGIDRIYLVTHAWHMARAVQAFQTAGFRVVPAPTAYTTRYRVDLLAFVPNANALHDSRTFLHELIGMLWYQLK 248          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A521XSU0_9PROT (YdcF family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XSU0_9PROT)

HSP 1 Score: 155 bits (391), Expect = 4.760e-44
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y  APEYG+DTV+  TL R+R+ A++QR +G P++V+GGKP   D SEA QMK+ L Q+F+  V+W E+ S NT+++AR +   L +A I R+ LVTHA HM R+ + FE AGF V+ A TGF+T +   +LNFLP A  L  S     E++GL W+ LR
Sbjct:   91 YFHAPEYGSDTVNDATLVRMRYAAKIQRDTGKPLLVTGGKPQGNDLSEAQQMKSVLEQEFKVAVRWTEDASDNTLQNARYSYQMLQEAGIKRVYLVTHAWHMPRSVMVFESAGFEVIPAPTGFTTYYRITLLNFLPGADALGRSWVFIHELIGLLWFRLR 250          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A7Y3NKR6_9PROT (YdcF family protein n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y3NKR6_9PROT)

HSP 1 Score: 155 bits (391), Expect = 5.030e-44
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 YQGAPEYG-TDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y  APEY   DTVS  TL+RIR+GA+LQR +G PI++SGGKP     SEA QM+A L Q+FQ  V+W E+ S NT E+ARN+   L    I +I LVTHA HM RA  +F QAGF VVEA T F T   PG++ F+P A+ L  S     E++GL WY ++
Sbjct:   89 YFHAPEYADNDTVSYLTLQRIRYGAKLQRATGKPILISGGKPVGGQTSEAGQMRAVLEQEFQVAVRWTEDDSNNTAENARNSYRILHPLGIQKIYLVTHAWHMPRAARSFRQAGFTVVEAPTAFVTFSRPGLMAFVPRAESLHDSSIFMHELVGLLWYRIK 249          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A512LAF0_9PROT (DUF218 domain-containing protein n=1 Tax=Sulfuriferula plumbiphila TaxID=171865 RepID=A0A512LAF0_9PROT)

HSP 1 Score: 154 bits (390), Expect = 6.200e-44
Identity = 80/160 (50.00%), Postives = 106/160 (66.25%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y   PEYG DT+    LER+R+GARL R++GLPI+V+GGKP A   S+A  M+AAL QDF+  V+W E  S  T ++ARN+   LA  RI RI LVTHA H+ RA  AFE+AGFRV+ A TGF+      +++F+P  +GL+ S     E +GL WY L+
Sbjct:   89 YFDTPEYGGDTIDSLALERLRYGARLARMTGLPILVTGGKP-AGGKSQARLMQAALEQDFRVPVRWAEAHSATTWDNARNSYTLLAPTRIRRIFLVTHAWHLPRAVYAFEKAGFRVIPAGTGFTFAKTTRVMDFIPQPRGLQASYYAMHEAIGLIWYRLK 247          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A1G0EB15_9PROT (DUF218 domain-containing protein n=2 Tax=unclassified Nitrosomonadales TaxID=1660158 RepID=A0A1G0EB15_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.590e-43
Identity = 87/169 (51.48%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 YQGAPEY-GTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLRLFASKQKA 504
            Y  APEY G DTV+G+TL  +R+GA+LQR +G P++VSGGKP   + SEA QM+A L Q+F+  V+W+E+ S NT+E+AR +   L +A I RI LVTHA HM RA   F  AGF VVEA TGF+T H    L FLP A+ L  S+  F E +GL WY ++L  S  +A
Sbjct:   89 YFRAPEYAGQDTVNGSTLLHLRYGAKLQRETGHPVLVSGGKPQGNELSEAQQMRAVLEQEFRIPVRWIEDASDNTLENARYSFQILQKADIRRIYLVTHAWHMPRAAHIFRHAGFEVVEAPTGFTTRHRIDPLAFLPRAESLCGSKIFFHEAIGLLWYRVKLALSDFQA 257          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A522X6A4_9PROT (YdcF family protein n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A522X6A4_9PROT)

HSP 1 Score: 153 bits (386), Expect = 3.000e-43
Identity = 85/165 (51.52%), Postives = 108/165 (65.45%), Query Frame = 1
Query:    1 YQGAPEY-GTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLRLFAS 492
            Y GAPEY G DTV+  TL R+R+GA+LQR +G P++V+GGKP     SEA QM+AAL QDF+  V+W E+ S NT E+AR +   L QA I RI LVTHA HM R+   F  AGF VVEA T F+T +   +  FLP+A+ L  S     E++GL WY +RL  S
Sbjct:   89 YFGAPEYAGQDTVNWLTLTRLRYGAKLQRETGKPVLVTGGKPLGGSLSEAQQMRAALEQDFRVPVRWTEDASDNTFENARYSFQILQQAGIKRIYLVTHAWHMPRSANVFRSAGFEVVEAPTAFTTRNQTDLFTFLPNAKSLYNSYFFAHEVIGLLWYRVRLAIS 253          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A1G0BDA5_9PROT (DUF218 domain-containing protein n=2 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1G0BDA5_9PROT)

HSP 1 Score: 152 bits (385), Expect = 3.700e-43
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y  APEYG DTVS  TL R+R+GARLQR +G PI+V+GGKP     SEA QMK AL QDF   V+W+E+ S NT E+A  +R  L    I  I LVTHA HM RA   F +AGF VVEA T F+T +   +L FLP A  L  S     E++GL WY ++
Sbjct:   87 YFHAPEYGQDTVSAQTLSRLRYGARLQRTTGKPILVTGGKPLGNRLSEAQQMKIALEQDFGIPVRWIEDSSDNTYENAYRSRQMLQAQGIRTIYLVTHAWHMPRAADIFRRAGFEVVEAPTAFTTRYQTDLLAFLPRASSLHDSSIFMHELIGLLWYRVK 246          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A1F3WVQ7_9PROT (DUF218 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_56_24 TaxID=1797475 RepID=A0A1F3WVQ7_9PROT)

HSP 1 Score: 152 bits (385), Expect = 3.810e-43
Identity = 84/163 (51.53%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 YQGAPEY-GTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLRLF 486
            Y  APEY G DTV+G TL R+R+GA+LQR +G PI+V+GGKP     SEA QM+AAL QDF   V+W E+ S NT+E+AR     L +  I RI LVTHA HM RA L+F  AGF V+EA T F+T +   +L FLP A+ L  S+    E++GL WY    F
Sbjct:   89 YFRAPEYAGQDTVNGHTLLRLRYGAKLQRETGKPILVTGGKPLGNAISEAQQMRAALEQDFHVPVRWTEDASGNTLENARYTFQTLQKEGIRRIFLVTHAWHMPRAALSFRHAGFEVIEAPTAFTTRYQTDLLAFLPRAESLHDSKIFIHEVIGLLWYRFIKF 251          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A3D0LTU5_9PROT (DUF218 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3D0LTU5_9PROT)

HSP 1 Score: 152 bits (384), Expect = 5.240e-43
Identity = 84/160 (52.50%), Postives = 101/160 (63.12%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHLR 480
            Y  APEYG DTVS  TL R+R+ ARL RL+  PI+VSGGKP     SEAA M   L QDF   V+W+E  S NT E+A ++   L +A IDRI LVTHA HM RA++AF  AG RVV AATG++  HP   L  LP A  L  S   F E++G  WY L+
Sbjct:   86 YLNAPEYGGDTVSQATLVRLRYAARLYRLTHKPILVSGGKPDGGRQSEAALMAETLTQDFHVPVRWIEGDSNNTAENAADSARLLRRAGIDRIYLVTHAWHMPRAKMAFTHAGMRVVPAATGYTGTHPFSPLMLLPDAGALGNSAIAFHEVIGWAWYALK 245          
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Match: A0A1G4XD47_9PROT (Uncharacterized SAM-binding protein YcdF, DUF218 family n=3 Tax=Nitrosospira TaxID=35798 RepID=A0A1G4XD47_9PROT)

HSP 1 Score: 152 bits (384), Expect = 5.380e-43
Identity = 78/159 (49.06%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAAQMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHALHMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFREILGLGWYHL 477
            Y  APEYG+DTV   +L+RIR+ A L R +G PI+ +GG P  +++SEAAQMKA L ++FQ  VKW E  S NT E+A  + + L +  I RI LVTHA HM RA   FEQAGF++V AAT ++T +   I  F+P+A  L+ S   F E++G+ WY L
Sbjct:   88 YYHAPEYGSDTVGRYSLQRIRYAAELHRRTGKPILATGGTPLGSESSEAAQMKAVLEKEFQVPVKWTEGASRNTRENAYKSFVILNRDEIRRIALVTHAWHMPRAAREFEQAGFKIVPAATAYTTRYKTDIFAFIPTAAALQKSSLFFHEVIGIAWYRL 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55566.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9NXU9_9PROT2.810e-4553.13DUF218 domain-containing protein n=1 Tax=Gallionel... [more]
A0A521XSU0_9PROT4.760e-4448.75YdcF family protein n=1 Tax=Betaproteobacteria bac... [more]
A0A7Y3NKR6_9PROT5.030e-4451.55YdcF family protein n=1 Tax=Gallionella sp. TaxID=... [more]
A0A512LAF0_9PROT6.200e-4450.00DUF218 domain-containing protein n=1 Tax=Sulfurife... [more]
A0A1G0EB15_9PROT1.590e-4351.48DUF218 domain-containing protein n=2 Tax=unclassif... [more]
A0A522X6A4_9PROT3.000e-4351.52YdcF family protein n=1 Tax=Gallionella sp. TaxID=... [more]
A0A1G0BDA5_9PROT3.700e-4351.88DUF218 domain-containing protein n=2 Tax=Nitrosomo... [more]
A0A1F3WVQ7_9PROT3.810e-4351.53DUF218 domain-containing protein n=1 Tax=Betaprote... [more]
A0A3D0LTU5_9PROT5.240e-4352.50DUF218 domain-containing protein n=1 Tax=Betaprote... [more]
A0A1G4XD47_9PROT5.380e-4349.06Uncharacterized SAM-binding protein YcdF, DUF218 f... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55566contigP-wetherbeei_contig55566:10..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1266925.JHVX01000007_gene2340
PFAMsDUF218
Model size513
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.97e-43
EggNOG OGsCOG1434@1|root,COG1434@2|Bacteria,1MVW8@1224|Proteobacteria,2VSTA@28216|Betaproteobacteria,372KI@32003|Nitrosomonadales
DescriptionDUF218 domain
Cds size513
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.456894-CDS-P-wetherbeei_contig55566:9..5221683186827.456894-CDS-P-wetherbeei_contig55566:9..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55566 10..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55566.1.1prot_P-wetherbeei_contig55566.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55566 10..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55566.1.1

>prot_P-wetherbeei_contig55566.1.1 ID=prot_P-wetherbeei_contig55566.1.1|Name=mRNA_P-wetherbeei_contig55566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
YQGAPEYGTDTVSGTTLERIRWGARLQRLSGLPIMVSGGKPYATDASEAA
QMKAALNQDFQANVKWLEEQSLNTMESARNARLQLAQARIDRIILVTHAL
HMRRARLAFEQAGFRVVEAATGFSTLHPPGILNFLPSAQGLELSQACFRE
ILGLGWYHLRLFASKQKAAQ*
back to top

mRNA from alignment at P-wetherbeei_contig55566:10..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55566.1.1 ID=mRNA_P-wetherbeei_contig55566.1.1|Name=mRNA_P-wetherbeei_contig55566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55566:10..522- (Phaeothamnion wetherbeei SAG_119_79)
TATCAGGGCGCGCCGGAATACGGCACCGATACAGTCTCCGGAACGACGCT GGAAAGAATTCGATGGGGGGCGCGGCTGCAGCGCCTGTCAGGGCTGCCGA TCATGGTTTCCGGAGGCAAACCGTATGCAACGGACGCCTCCGAAGCGGCC CAGATGAAAGCCGCCTTGAACCAGGACTTTCAGGCCAACGTTAAATGGCT GGAAGAGCAATCCCTGAACACCATGGAAAGCGCACGCAACGCCAGACTGC AACTAGCCCAGGCAAGAATCGATCGGATTATTCTGGTCACGCACGCGTTG CACATGCGGCGCGCGCGCCTGGCCTTCGAACAGGCAGGATTTCGCGTCGT TGAGGCAGCAACCGGGTTCTCCACGCTGCATCCGCCCGGCATCCTGAATT TTCTGCCGTCCGCGCAGGGTCTCGAACTCAGCCAGGCCTGCTTCCGCGAA ATCCTAGGCCTGGGCTGGTACCATTTGCGCCTCTTCGCAAGCAAGCAAAA GGCAGCGCAATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55566:10..522-

>mRNA_P-wetherbeei_contig55566.1.1 ID=mRNA_P-wetherbeei_contig55566.1.1|Name=mRNA_P-wetherbeei_contig55566.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55566:10..522- (Phaeothamnion wetherbeei SAG_119_79)
TATCAGGGCGCGCCGGAATACGGCACCGATACAGTCTCCGGAACGACGCT
GGAAAGAATTCGATGGGGGGCGCGGCTGCAGCGCCTGTCAGGGCTGCCGA
TCATGGTTTCCGGAGGCAAACCGTATGCAACGGACGCCTCCGAAGCGGCC
CAGATGAAAGCCGCCTTGAACCAGGACTTTCAGGCCAACGTTAAATGGCT
GGAAGAGCAATCCCTGAACACCATGGAAAGCGCACGCAACGCCAGACTGC
AACTAGCCCAGGCAAGAATCGATCGGATTATTCTGGTCACGCACGCGTTG
CACATGCGGCGCGCGCGCCTGGCCTTCGAACAGGCAGGATTTCGCGTCGT
TGAGGCAGCAACCGGGTTCTCCACGCTGCATCCGCCCGGCATCCTGAATT
TTCTGCCGTCCGCGCAGGGTCTCGAACTCAGCCAGGCCTGCTTCCGCGAA
ATCCTAGGCCTGGGCTGGTACCATTTGCGCCTCTTCGCAAGCAAGCAAAA
GGCAGCGCAATGA
back to top