mRNA_P-wetherbeei_contig55560.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55560.1.1
Unique NamemRNA_P-wetherbeei_contig55560.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: A0A6N7H234_9HYPH (AAA family ATPase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6N7H234_9HYPH)

HSP 1 Score: 311 bits (798), Expect = 5.020e-105
Identity = 165/173 (95.38%), Postives = 166/173 (95.95%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VLK QMP+GPDE RFFGAILDALGMPFSPRDRIATKQDTAVRLMRAT VRLLVIDELHNLLSGT MQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRF PFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSA EGVLGEIIAIV RAAVLAV
Sbjct:  100 VLKVQMPSGPDEGRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATKVRLLVIDELHNLLSGTTMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFEPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAAEGVLGEIIAIVIRAAVLAV 272          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: UPI001FFF4BCE (TniB family NTP-binding protein n=1 Tax=Bradyrhizobium sp. 200 TaxID=2782665 RepID=UPI001FFF4BCE)

HSP 1 Score: 296 bits (757), Expect = 7.750e-99
Identity = 155/173 (89.60%), Postives = 163/173 (94.22%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VLK QMP+GPDE RFFGAILDALG+PF PRDRIA KQ+ AVRLMRAT V+LLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSD+QLVNRF P+PLPLWTDD+EYRRLLSTLEAVLPLRKPSHLTDPAMAARILSA EGVLGEIIAIV RAAV A+
Sbjct:   97 VLKVQMPSGPDEGRFFGAILDALGLPFGPRDRIAAKQEAAVRLMRATKVQLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDEQLVNRFEPWPLPLWTDDEEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAAEGVLGEIIAIVIRAAVKAI 269          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: UPI001BA911DF (ATP-binding protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001BA911DF)

HSP 1 Score: 291 bits (744), Expect = 7.820e-97
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VLK QMPAGPDE RFFGAIL+ALGMP+  RDR+A KQDTAVR+MRATG RLLVIDELHNLLSGTA+QQRRLLNVLRWLGNELQIPLVGVGT EALRAIRSD+QLVNRF PF LPLWTDDDEYRRLLSTLEAVLPLRKPSHL DPAMA RIL+A EGVLGEIIAIV R+AV+AV
Sbjct:   99 VLKIQMPAGPDEGRFFGAILEALGMPYGARDRVAAKQDTAVRIMRATGTRLLVIDELHNLLSGTALQQRRLLNVLRWLGNELQIPLVGVGTPEALRAIRSDEQLVNRFEPFALPLWTDDDEYRRLLSTLEAVLPLRKPSHLADPAMAGRILTAAEGVLGEIIAIVVRSAVVAV 271          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: A0A521QER1_9HYPH (Transposase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A521QER1_9HYPH)

HSP 1 Score: 290 bits (743), Expect = 1.150e-96
Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            V++ QMP GPDE RFFGAILDALGMPFSPRDRIATKQDTAVR+MRA G RLLVIDELHNLLSGT+MQQRRLLN+LRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRF P  LPLWTDDDEYRRLLSTLEAVLPLRKPSHL D AM ARILSA EGVLGEIIA+V RAAV AV
Sbjct:  100 VVRMQMPPGPDEGRFFGAILDALGMPFSPRDRIATKQDTAVRVMRAMGARLLVIDELHNLLSGTSMQQRRLLNLLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFEPLALPLWTDDDEYRRLLSTLEAVLPLRKPSHLGDSAMVARILSASEGVLGEIIAVVVRAAVRAV 272          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: UPI001FE6487F (TniB family NTP-binding protein n=1 Tax=Bradyrhizobium diversitatis TaxID=2755406 RepID=UPI001FE6487F)

HSP 1 Score: 290 bits (741), Expect = 2.160e-96
Identity = 149/173 (86.13%), Postives = 162/173 (93.64%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            V+K QMP+GPDE RFFGAILDALGMPFSPRDRIA KQDTAVR+MRA G R+LVIDELHN+LSG+AMQQRRLLN+LRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRF P+PLPLW+DD+EYRRLLSTLEAVLPLRKPSHL D A+AARILSA EGVLGE+IAI+ RAAV AV
Sbjct:   98 VVKVQMPSGPDEGRFFGAILDALGMPFSPRDRIAAKQDTAVRVMRAAGTRMLVIDELHNVLSGSAMQQRRLLNLLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFQPYPLPLWSDDEEYRRLLSTLEAVLPLRKPSHLADTALAARILSASEGVLGEMIAIIIRAAVRAV 270          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: A0A7W5Z7M2_9HYPH (Uncharacterized protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7W5Z7M2_9HYPH)

HSP 1 Score: 283 bits (724), Expect = 8.260e-94
Identity = 146/173 (84.39%), Postives = 159/173 (91.91%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            V+K QMP GPDE RFFGAIL ALGMPFSPRDRIATKQDTAVR+M+A G R+LVIDELHN+LSG+AMQQRRLLN+LRWLGNEL+IPLVGVGTAEALRAIRSDDQLVNRF P PLPLW+DDDEYRRLLSTLEAVLPLRKPSHL D A+A R+LSA EGVLGE+IA+V RAAV AV
Sbjct:   98 VVKVQMPPGPDEGRFFGAILHALGMPFSPRDRIATKQDTAVRIMQAMGARMLVIDELHNVLSGSAMQQRRLLNLLRWLGNELRIPLVGVGTAEALRAIRSDDQLVNRFEPHPLPLWSDDDEYRRLLSTLEAVLPLRKPSHLADSALAGRVLSASEGVLGEMIAVVIRAAVRAV 270          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: UPI0018C282E4 (TniB family NTP-binding protein n=1 Tax=Methylosinus sp. H3A TaxID=2785786 RepID=UPI0018C282E4)

HSP 1 Score: 280 bits (716), Expect = 1.360e-92
Identity = 143/173 (82.66%), Postives = 158/173 (91.33%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            V+K QMP GPDE RFFGAILDA+GMPFSPRDRIATKQD  VR+MR+TG R+LVIDELHN+LSG+AMQQRRLLN+LRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRF P PLPLW+DD EYRRLL+TLEAVLPLRKPSHL + A+ ARILSA EGVLGE+IA++ RAAV AV
Sbjct:   98 VVKVQMPPGPDEGRFFGAILDAIGMPFSPRDRIATKQDAVVRVMRSTGTRMLVIDELHNVLSGSAMQQRRLLNLLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFEPHPLPLWSDDGEYRRLLNTLEAVLPLRKPSHLAESALGARILSASEGVLGEMIAVIIRAAVRAV 270          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: M5FB08_9HYPH (TniB family protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=M5FB08_9HYPH)

HSP 1 Score: 279 bits (713), Expect = 4.130e-92
Identity = 144/173 (83.24%), Postives = 154/173 (89.02%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VL+ QMP GPDE R FGAILD LG+PF PRDRIA KQD AVR+MRAT  RLLVIDELHNLLSGT+MQQRRLLN+LRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRF PF LP+W DD+EYRRLL+TLEA LPLRKPSHL DP MA RIL+A EGVLGEIIA+V RAAVLAV
Sbjct:  100 VLRVQMPPGPDEGRLFGAILDGLGVPFGPRDRIAAKQDIAVRMMRATDTRLLVIDELHNLLSGTSMQQRRLLNLLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFEPFALPVWEDDEEYRRLLATLEAALPLRKPSHLNDPVMAGRILAAAEGVLGEIIAVVVRAAVLAV 272          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: UPI000C30426D (TniB family NTP-binding protein n=1 Tax=Bosea sp. FBZP-16 TaxID=2065382 RepID=UPI000C30426D)

HSP 1 Score: 260 bits (664), Expect = 1.130e-84
Identity = 133/173 (76.88%), Postives = 153/173 (88.44%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VLK QMP GPDE RFFGAILDALGMP +P  R+A KQD A+R++R TGVR+LVIDELHNLLSG+A+QQRRLLN+LRWLGNELQI LVGVGTAEALRAIRSDDQL NRF PFPLPLW DDD +RRLLSTLEAVLPLR+ S L +PA+A+RIL+  EGVLGEI+++V RAAV+A+
Sbjct:  100 VLKVQMPPGPDECRFFGAILDALGMPHAPHGRVAAKQDAALRVLRDTGVRVLVIDELHNLLSGSALQQRRLLNLLRWLGNELQIALVGVGTAEALRAIRSDDQLANRFEPFPLPLWDDDDGFRRLLSTLEAVLPLRRASGLAEPAIASRILAGSEGVLGEIVSMVVRAAVMAI 272          
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Match: A0A8G2WVN2_PSEAI (Transposase n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A8G2WVN2_PSEAI)

HSP 1 Score: 248 bits (633), Expect = 2.970e-81
Identity = 129/173 (74.57%), Postives = 147/173 (84.97%), Query Frame = 1
Query:    1 VLKAQMPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVIDELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLVNRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGEGVLGEIIAIVTRAAVLAV 519
            VLK QMPAGPDE RFFGAILD LGM   P++R+A +Q+ AVRLMR T VR+LVIDELHN+LSG  +QQRRLLN+LRWLGNELQIPLVGVGTAEALRAIRSDDQL NRF P  LPLW +D+ YRRLLSTLEA+LPLRKPS L  PA+A +I +  EGVLGEI++IVTRAA +AV
Sbjct:    9 VLKMQMPAGPDERRFFGAILDQLGMDHWPKERVAAQQNLAVRLMRTTDVRVLVIDELHNVLSGPVLQQRRLLNLLRWLGNELQIPLVGVGTAEALRAIRSDDQLANRFEPVALPLWDEDEAYRRLLSTLEALLPLRKPSGLAQPALAGKIFALSEGVLGEIVSIVTRAAAVAV 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55560.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7H234_9HYPH5.020e-10595.38AAA family ATPase n=2 Tax=Hyphomicrobiales TaxID=3... [more]
UPI001FFF4BCE7.750e-9989.60TniB family NTP-binding protein n=1 Tax=Bradyrhizo... [more]
UPI001BA911DF7.820e-9787.28ATP-binding protein n=3 Tax=Bacteria TaxID=2 RepID... [more]
A0A521QER1_9HYPH1.150e-9688.44Transposase n=2 Tax=Hyphomicrobiales TaxID=356 Rep... [more]
UPI001FE6487F2.160e-9686.13TniB family NTP-binding protein n=1 Tax=Bradyrhizo... [more]
A0A7W5Z7M2_9HYPH8.260e-9484.39Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
UPI0018C282E41.360e-9282.66TniB family NTP-binding protein n=1 Tax=Methylosin... [more]
M5FB08_9HYPH4.130e-9283.24TniB family protein n=3 Tax=Hyphomicrobiales TaxID... [more]
UPI000C30426D1.130e-8476.88TniB family NTP-binding protein n=1 Tax=Bosea sp. ... [more]
A0A8G2WVN2_PSEAI2.970e-8174.57Transposase n=1 Tax=Pseudomonas aeruginosa TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55560contigP-wetherbeei_contig55560:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1297569.MESS2_850020
PFAMsTniB
Model size519
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.22e-91
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,1QTSH@1224|Proteobacteria,2TW5V@28211|Alphaproteobacteria,43RWX@69277|Phyllobacteriaceae
DescriptionBacterial TniB protein
Cds size504
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.3644886-UTR-P-wetherbeei_contig55560:2..171683186827.3644886-UTR-P-wetherbeei_contig55560:2..17Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55560 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.3765879-CDS-P-wetherbeei_contig55560:17..5211683186827.3765879-CDS-P-wetherbeei_contig55560:17..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55560 18..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55560.1.1prot_P-wetherbeei_contig55560.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55560 18..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55560.1.1

>prot_P-wetherbeei_contig55560.1.1 ID=prot_P-wetherbeei_contig55560.1.1|Name=mRNA_P-wetherbeei_contig55560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MPAGPDESRFFGAILDALGMPFSPRDRIATKQDTAVRLMRATGVRLLVID
ELHNLLSGTAMQQRRLLNVLRWLGNELQIPLVGVGTAEALRAIRSDDQLV
NRFVPFPLPLWTDDDEYRRLLSTLEAVLPLRKPSHLTDPAMAARILSAGE
GVLGEIIAIVTRAAVLAV
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mRNA from alignment at P-wetherbeei_contig55560:3..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55560.1.1 ID=mRNA_P-wetherbeei_contig55560.1.1|Name=mRNA_P-wetherbeei_contig55560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55560:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
GTACTGAAGGCGCAAATGCCGGCTGGCCCTGACGAAAGCCGCTTCTTCGG CGCAATCCTCGATGCGCTGGGAATGCCGTTCAGTCCGCGCGATCGGATTG CCACCAAACAGGACACGGCGGTCCGCCTTATGCGCGCCACCGGAGTGCGG CTGCTGGTGATCGACGAGTTGCACAATCTGCTGTCGGGCACGGCCATGCA GCAACGGCGGCTGCTCAACGTGCTCCGCTGGCTCGGCAACGAATTGCAGA TTCCATTGGTTGGTGTCGGCACGGCTGAGGCGCTGCGCGCGATCCGCAGT GACGACCAACTCGTCAATCGGTTCGTGCCGTTCCCGCTACCGCTTTGGAC TGACGACGACGAATATCGCCGGCTGCTGAGTACGCTCGAGGCGGTGCTGC CGCTGCGCAAGCCATCGCACCTTACGGATCCCGCAATGGCGGCCCGTATC CTCTCAGCCGGCGAAGGCGTGCTCGGCGAGATCATCGCGATCGTCACTCG TGCAGCCGTGCTGGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55560:3..521+

>mRNA_P-wetherbeei_contig55560.1.1 ID=mRNA_P-wetherbeei_contig55560.1.1|Name=mRNA_P-wetherbeei_contig55560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig55560:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCTGGCCCTGACGAAAGCCGCTTCTTCGGCGCAATCCTCGATGC
GCTGGGAATGCCGTTCAGTCCGCGCGATCGGATTGCCACCAAACAGGACA
CGGCGGTCCGCCTTATGCGCGCCACCGGAGTGCGGCTGCTGGTGATCGAC
GAGTTGCACAATCTGCTGTCGGGCACGGCCATGCAGCAACGGCGGCTGCT
CAACGTGCTCCGCTGGCTCGGCAACGAATTGCAGATTCCATTGGTTGGTG
TCGGCACGGCTGAGGCGCTGCGCGCGATCCGCAGTGACGACCAACTCGTC
AATCGGTTCGTGCCGTTCCCGCTACCGCTTTGGACTGACGACGACGAATA
TCGCCGGCTGCTGAGTACGCTCGAGGCGGTGCTGCCGCTGCGCAAGCCAT
CGCACCTTACGGATCCCGCAATGGCGGCCCGTATCCTCTCAGCCGGCGAA
GGCGTGCTCGGCGAGATCATCGCGATCGTCACTCGTGCAGCCGTGCTGGC
GGTG
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