mRNA_P-wetherbeei_contig5555.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5555.1.1
Unique NamemRNA_P-wetherbeei_contig5555.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5555contigP-wetherbeei_contig5555:2267..3551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size947
Hectar predicted targeting categoryother localisation
Exons3
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.2222648-UTR-P-wetherbeei_contig5555:2266..23401683186827.2222648-UTR-P-wetherbeei_contig5555:2266..2340Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5555 2267..2340 -
1683186827.233446-UTR-P-wetherbeei_contig5555:2503..25051683186827.233446-UTR-P-wetherbeei_contig5555:2503..2505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5555 2504..2505 -
1683186827.2535307-UTR-P-wetherbeei_contig5555:3030..31621683186827.2535307-UTR-P-wetherbeei_contig5555:3030..3162Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5555 3031..3162 -
1683186827.2699564-UTR-P-wetherbeei_contig5555:3337..35511683186827.2699564-UTR-P-wetherbeei_contig5555:3337..3551Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5555 3338..3551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.243506-CDS-P-wetherbeei_contig5555:2505..30301683186827.243506-CDS-P-wetherbeei_contig5555:2505..3030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5555 2506..3030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5555.1.1prot_P-wetherbeei_contig5555.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5555 2506..3030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5555.1.1

>prot_P-wetherbeei_contig5555.1.1 ID=prot_P-wetherbeei_contig5555.1.1|Name=mRNA_P-wetherbeei_contig5555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MTTTGKRCMYYRDGASLGGCISMTAGGCISRARLFATAGTIDAAAALYTL
ADRGRRKISAGWCSKTPTSQWIITFRDCTTSGSGDAVMLHETTSRSKNVL
FEDNAANRGVWGAVCVNGRTVSFEQCDFRSNVTVNAGGVYVRGSIVRTAK
KIFFDASYTTASFNERTFERNNGT*
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mRNA from alignment at P-wetherbeei_contig5555:2267..3551-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5555.1.1 ID=mRNA_P-wetherbeei_contig5555.1.1|Name=mRNA_P-wetherbeei_contig5555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1285bp|location=Sequence derived from alignment at P-wetherbeei_contig5555:2267..3551- (Phaeothamnion wetherbeei SAG_119_79)
CAGCCCAGAGAACGCCACGGGACTGCAAGAAGCGTTGCTGTCGAACAAGG
CCGACAGTAACTCGGAGCTGAACGTCATGTGGCGGGGAGGTGCGGTAGTC
AGGACGGCCATCATGCTGCCCACCCTCGGCAACTTGCGCCTCAATGTCCG
GGGCGAAGACACACTCACGGCGGAGGCCTTGGGTTCTGGCATCGACTGAC
TTTTCACCTACTGGGTGAGTAGGATTACGCCCTTTTGTCTGATTTCCACC
TCCGCGCTCTCCGGGACGGCTTAGAATTCTTCTCTTGGCCGAATATGCGA
AGGGGAGTCAGGATGCTTCACATATTGCACACCTTGACACAGTTTTGCTT
CGCATGCCGCACCGCTCAATCTTTCCTTCAAATCGGCAGGGCTCAACCAC
TGAAAATGATGATGCTTTGACTGCGGACACCGTGCAAAACACAGTTCAAG
ACTTGCAATATCCACTGCTGGAGGACCTCTACGACATTAAGAACAGCAAC
GCGACCCTCACCCTCATCGACATGACCACCACCGGCAAGCGCTGCATGTA
CTACAGGGACGGCGCTTCTCTCGGCGGGTGCATCTCCATGACTGCAGGCG
GCTGCATATCGAGAGCGCGGTTGTTCGCGACTGCTGGAACGATTGATGCG
GCGGCGGCGCTGTATACACTCGCGGACCGTGGAAGGCGGAAGATATCGGC
GGGATGGTGCTCAAAAACGCCGACGTCCCAATGGATTATCACCTTTCGCG
ACTGCACCACCAGCGGGTCGGGCGACGCCGTCATGCTGCATGAAACAACT
TCGAGGTCCAAGAACGTGCTTTTTGAGGATAACGCCGCAAATCGCGGAGT
ATGGGGTGCTGTGTGTGTCAACGGCAGAACGGTGTCTTTCGAACAGTGTG
ATTTCAGAAGCAACGTGACAGTAAATGCTGGCGGCGTATATGTTCGGGGC
TCGATTGTGAGGACTGCGAAGAAGATTTTCTTTGACGCCTCATACACGAC
GGCATCGTTTAACGAGCGTACCTTTGAGCGCAACAACGGGACATAACGGT
AAGAGGGACATGTGAGAGACCGATTTTGCGTGTTTTCCTCCTCCGATACC
TTAACGGGCTGCAATCTTTCACTGCAGGTCCAGTGCTCCACCGCAACCTA
AGCAAGAATGCTTGCACCCAACTACGAATTCCAAAATGCACCAAAAAATT
GTTGGCGGCAGGCGGTCGCGGCGCGCTGCATCTGGAAGCTCACGTTGCAG
CTTCGGTCGCGAACAGCAGATTATTTAGCAGTATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5555:2267..3551-

>mRNA_P-wetherbeei_contig5555.1.1 ID=mRNA_P-wetherbeei_contig5555.1.1|Name=mRNA_P-wetherbeei_contig5555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig5555:2267..3551- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCACCGGCAAGCGCTGCATGTACTACAGGGACGGCGCTTCTCT
CGGCGGGTGCATCTCCATGACTGCAGGCGGCTGCATATCGAGAGCGCGGT
TGTTCGCGACTGCTGGAACGATTGATGCGGCGGCGGCGCTGTATACACTC
GCGGACCGTGGAAGGCGGAAGATATCGGCGGGATGGTGCTCAAAAACGCC
GACGTCCCAATGGATTATCACCTTTCGCGACTGCACCACCAGCGGGTCGG
GCGACGCCGTCATGCTGCATGAAACAACTTCGAGGTCCAAGAACGTGCTT
TTTGAGGATAACGCCGCAAATCGCGGAGTATGGGGTGCTGTGTGTGTCAA
CGGCAGAACGGTGTCTTTCGAACAGTGTGATTTCAGAAGCAACGTGACAG
TAAATGCTGGCGGCGTATATGTTCGGGGCTCGATTGTGAGGACTGCGAAG
AAGATTTTCTTTGACGCCTCATACACGACGGCATCGTTTAACGAGCGTAC
CTTTGAGCGCAACAACGGGACATAA
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