mRNA_P-wetherbeei_contig5553.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5553.1.1
Unique NamemRNA_P-wetherbeei_contig5553.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5553.1.1 vs. uniprot
Match: D8LL26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 7.470e-40
Identity = 84/212 (39.62%), Postives = 108/212 (50.94%), Query Frame = 1 
Query:  127 SVREWWAEEFRFRGFGIGFVKPIFRGTLLRPDMGVGLRLPLTVHFRTWEQQIRLPALSSSFFVFWPLSVQVSCSISYPVELVQGGLSAAGHRVLAVAAPRXXXXXXXXXXXXXXLFXXXXXXXXXXXXXXXXXXDGSISSGFGVEXXXXXXXXXXXXXXXXXXXXXMDMGHRPRASTVQRLGMSLSLRYSVQYGLQWWASPYFFLLPGVRVL 762
            + + WWAEEF FRGFGIGFVKP+FRG LLRPD+GVG+RLP+T+HFR+WE +  LP+++ S FV WP +VQVS ++SYP EL+Q   + A  +++  +                                                                          R R   VQRLG+S+ +RYS  YG QWW SPYFFLLPGVRVL
Sbjct:   78 ACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESREALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQV--------------------------------------------------------------------RRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVL 221
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BLAST of mRNA_P-wetherbeei_contig5553.1.1 vs. uniprot
Match: A0A835Z8S6_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.280e-25
Identity = 78/226 (34.51%), Postives = 103/226 (45.58%), Query Frame = 1 
Query:  127 SVREWWAEEFRFRGFGIGFVKPIFRGTLLR---PDMGVGLRLPLTVHFRTWEQQIRLPALSSSFFVFWPLSVQVSCSISYPVELVQGGLSAAGHRVLAVAAPRXXXXXXXXXXXXXXLFXXXXXXXXXXXXXXXXXXDGSISSGFGVEXXXXXXXXXXXXXXXXXXXXXMDMGHRPRASTVQRLGMSLSLRYSVQYGLQWWASPYFFLLPGVRVLAVLVVRLLAAI 795
            ++ +WW  EF FRGFG+G VKP+F G +LR    DMGVGLR+P+T HF  WE +  LP +SSS F FWPL VQ S ++S     +Q          LA+A                                      GS   G   +                            R +TV R+G+++S+R S +YGLQ WASPY FLLPGVR++   +   LA I
Sbjct:  310 ALAQWWEREFVFRGFGVGLVKPLFAGYMLRGNLSDMGVGLRMPITSHFNCWEARRDLPLISSSLFFFWPLKVQTSFTMSVASAQLQDWAGGVKGLWLALA----------------------DSFTAEGRRRAKIWLSGSGEGGAFAKKPVQ------------------------RRTTVTRVGVTVSVRLSAEYGLQVWASPYIFLLPGVRIITDALSSALALI 489
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BLAST of mRNA_P-wetherbeei_contig5553.1.1 vs. uniprot
Match: W7TMJ5_9STRA (Peroxin/Dysferlin domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMJ5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.380e-5
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  148 EEFRFRGFGIGFVKPIFRGTLLRPDMGVGLRLPLTVHFRTWEQQIRLPALSSSFFVFWPLSVQVSCSISYPVELV 372
            EE++F+GF +   K     +LL  D+G G  +PLT +F  WE+   LP ++S   +F+P  V    S SYP +LV
Sbjct:  301 EEYQFKGFAVTLTK-----SLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLV 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL26_ECTSI7.470e-4039.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8S6_9STRA2.280e-2534.51Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
W7TMJ5_9STRA3.380e-538.67Peroxin/Dysferlin domain protein n=1 Tax=Nannochlo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5553contigP-wetherbeei_contig5553:2..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size899
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000860.1
Cds size897
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.0218027-CDS-P-wetherbeei_contig5553:2..811683186827.0218027-CDS-P-wetherbeei_contig5553:2..81Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5553 3..81 -
1683186827.0332167-CDS-P-wetherbeei_contig5553:249..7311683186827.0332167-CDS-P-wetherbeei_contig5553:249..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5553 250..731 -
1683186827.0434191-CDS-P-wetherbeei_contig5553:971..13071683186827.0434191-CDS-P-wetherbeei_contig5553:971..1307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5553 972..1307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5553.1.1prot_P-wetherbeei_contig5553.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5553 3..1307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5553.1.1

>prot_P-wetherbeei_contig5553.1.1 ID=prot_P-wetherbeei_contig5553.1.1|Name=mRNA_P-wetherbeei_contig5553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
SATAAEVAAADAVEAVAAAAFAAREAAKRLRRSQQLRRLRSPSVREWWAE
EFRFRGFGIGFVKPIFRGTLLRPDMGVGLRLPLTVHFRTWEQQIRLPALS
SSFFVFWPLSVQVSCSISYPVELVQGGLSAAGHRVLAVAAPRRSSSSAVA
APSGGGLFGGGGSGDGGSGGGGPGGGDGSISSGFGVEGGSFGGGGNSGGG
GFGGGGGGMDMGHRPRASTVQRLGMSLSLRYSVQYGLQWWASPYFFLLPG
VRVLAVLVVRLLAAIAVARKWVRINGYGRPRRIIGGLASALVPGFACSV
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mRNA from alignment at P-wetherbeei_contig5553:2..1307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5553.1.1 ID=mRNA_P-wetherbeei_contig5553.1.1|Name=mRNA_P-wetherbeei_contig5553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1306bp|location=Sequence derived from alignment at P-wetherbeei_contig5553:2..1307- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCGACCGCAGCGGAAGTCGCCGCCGCCGATGCCGTCGAGGCGGTCGC
GGCGGCTGCCTTCGCCGCGCGGGAGGCGGCGAAGCGGCTGCGGCGGTCGC
AGCAGCTGCGGCGGCTGCGTTCGCCCAGCGTGCGGGAGTGGTGGGCGGAA
GAGTTCCGATTTCGGGGCTTCGGGATTGGCTTTGTCAAGCCGATCTTCCG
GGGCACGCTGCTGCGCCCGGACATGGGTGTCGGGCTGCGGCTGCCGCTGA
CGGTGCACTTCCGCACTTGGGAGCAGCAGATAAGGCTACCGGCGCTGTCG
TCGTCCTTCTTCGTCTTCTGGCCGCTCTCCGTCCAGGTGCGTGGCGAAAT
CCTTTTTCAACAACTGGAGGAAGGGATGCCTCCGTTGGGTTTACCTAAAC
ATTGTTGAAAGCAGTGGTCGCAGGAAAACGTAATGGCCGGGTGTATGGAT
TTGACGGACGCTCGCCCGCTGGCGTTCTGAATTTGACGTGTGCCAAAAAA
GACGCTCATAATGTCTGCCTTTGGTTATCGGTATCACCGCCCCTGTTTCC
TCGCACCATTTTCACGGCCAGCGCAGGTGAGCTGCTCCATCTCCTACCCT
GTGGAGCTCGTGCAGGGCGGCCTCTCCGCCGCGGGCCACCGCGTGCTGGC
TGTCGCCGCGCCCCGCCGCTCCTCCTCCTCCGCCGTCGCAGCGCCTTCCG
GCGGCGGCCTCTTCGGCGGCGGCGGCTCCGGCGATGGCGGCTCCGGCGGC
GGCGGTCCCGGTGGCGGTGATGGCAGCATCAGCAGCGGATTTGGCGTCGA
AGGCGGTTCTTTCGGTGGCGGCGGCAACTCCGGTGGCGGCGGATTCGGCG
GCGGCGGCGGCGGCATGGACATGGGGCACCGGCCCCGTGCATCGACCGTC
CAGCGGCTTGGCATGAGTCTGTCGCTGCGCTACTCGGTGCAGTACGGGCT
GCAGTGGTGGGCATCTCCATACTTCTTCCTGCTACCTGGCGTGCGCGTGC
TGGCGGTGCTCGTGGTGCGGCTCCTCGCCGCCATTGCCGTCGCGCGCAAG
TGGGTCAGGTCAGTACGAGACACTTTTGTACGTGCATGTTCTCTTTCGGT
GTCAATTTCCCAAAGTCCTCATATTAAAGTGTCGGCTTTTCCTAAGCTGC
CAATTGCTGCTCAAAGGGCTTCACTTTATGTGTAAACTTTTAAGGGCTTT
AATTTTCTGTGGGCCTAAAATCCCAGGATAAACGGATATGGCCGGCCAAG
GAGGATCATTGGCGGGCTGGCGTCGGCGCTGGTGCCGGGTTTTGCTTGCT
CCGTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5553:2..1307-

>mRNA_P-wetherbeei_contig5553.1.1 ID=mRNA_P-wetherbeei_contig5553.1.1|Name=mRNA_P-wetherbeei_contig5553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig5553:2..1307- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCGACCGCAGCGGAAGTCGCCGCCGCCGATGCCGTCGAGGCGGTCGC
GGCGGCTGCCTTCGCCGCGCGGGAGGCGGCGAAGCGGCTGCGGCGGTCGC
AGCAGCTGCGGCGGCTGCGTTCGCCCAGCGTGCGGGAGTGGTGGGCGGAA
GAGTTCCGATTTCGGGGCTTCGGGATTGGCTTTGTCAAGCCGATCTTCCG
GGGCACGCTGCTGCGCCCGGACATGGGTGTCGGGCTGCGGCTGCCGCTGA
CGGTGCACTTCCGCACTTGGGAGCAGCAGATAAGGCTACCGGCGCTGTCG
TCGTCCTTCTTCGTCTTCTGGCCGCTCTCCGTCCAGGTGAGCTGCTCCAT
CTCCTACCCTGTGGAGCTCGTGCAGGGCGGCCTCTCCGCCGCGGGCCACC
GCGTGCTGGCTGTCGCCGCGCCCCGCCGCTCCTCCTCCTCCGCCGTCGCA
GCGCCTTCCGGCGGCGGCCTCTTCGGCGGCGGCGGCTCCGGCGATGGCGG
CTCCGGCGGCGGCGGTCCCGGTGGCGGTGATGGCAGCATCAGCAGCGGAT
TTGGCGTCGAAGGCGGTTCTTTCGGTGGCGGCGGCAACTCCGGTGGCGGC
GGATTCGGCGGCGGCGGCGGCGGCATGGACATGGGGCACCGGCCCCGTGC
ATCGACCGTCCAGCGGCTTGGCATGAGTCTGTCGCTGCGCTACTCGGTGC
AGTACGGGCTGCAGTGGTGGGCATCTCCATACTTCTTCCTGCTACCTGGC
GTGCGCGTGCTGGCGGTGCTCGTGGTGCGGCTCCTCGCCGCCATTGCCGT
CGCGCGCAAGTGGGTCAGGATAAACGGATATGGCCGGCCAAGGAGGATCA
TTGGCGGGCTGGCGTCGGCGCTGGTGCCGGGTTTTGCTTGCTCCGTT
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