mRNA_P-wetherbeei_contig55515.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig55515.1.1
Unique Name	mRNA_P-wetherbeei_contig55515.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A530BK97_9HYPH (Aminomethyl transferase family protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530BK97_9HYPH)

HSP 1 Score: 307 bits (786), Expect = 4.150e-104
Identity = 150/163 (92.02%), Postives = 157/163 (96.32%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYAN+RRMEKSLRLQNADLLTEYNLLEADL RPKVKE DF GKAKHLE+RAR+HQPAMLCTLVMTENTD+KGVARYPVG MPV DPATGETLVDELGRRSFTTSVAYGPT+GKNIALAYLPW+YCQEGRKL VEYFGETYPVEVAG+GYKPLYDPENLKPRS
Sbjct:   87 ETYANTRRMEKSLRLQNADLLTEYNLLEADLARPKVKENDFCGKAKHLEYRAREHQPAMLCTLVMTENTDSKGVARYPVGTMPVQDPATGETLVDELGRRSFTTSVAYGPTIGKNIALAYLPWAYCQEGRKLQVEYFGETYPVEVAGVGYKPLYDPENLKPRS 249

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A530Y6H8_9HYPH (Aminomethyl transferase family protein (Fragment) n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A530Y6H8_9HYPH)

HSP 1 Score: 300 bits (767), Expect = 6.930e-102
Identity = 145/163 (88.96%), Postives = 154/163 (94.48%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNLLEADL RPKVKEADF GKAKHL++RAR HQPAMLCTLVMT+N D++GVARYPVG MPVMDP TGETLVDELGRRSFTTSVAYGPT+GKNIALAYLPW+YCQEG KL VEYFGETYPVEVA +GY+PLYDPENLKPRS
Sbjct:   42 ETYANSRRMEKSLRLQNADLLTEYNLLEADLARPKVKEADFSGKAKHLDYRARAHQPAMLCTLVMTDNVDSRGVARYPVGTMPVMDPQTGETLVDELGRRSFTTSVAYGPTIGKNIALAYLPWAYCQEGHKLDVEYFGETYPVEVAAVGYRPLYDPENLKPRS 204

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A530RAX7_9HYPH (Aminomethyl transferase family protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530RAX7_9HYPH)

HSP 1 Score: 300 bits (769), Expect = 1.900e-100
Identity = 145/163 (88.96%), Postives = 154/163 (94.48%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNLLEADL RPKVKEADF GKAKHLE+RAR HQPAMLCTLVMT+N D++GVARYPVG MPVMDP TGETLVDELGRRSFTTS+AYGPT+GKNIALAYLPW+YCQEGRKL VEYFGETYPVEVA +GY+PLYDPENL PRS
Sbjct:  161 ETYANSRRMEKSLRLQNADLLTEYNLLEADLARPKVKEADFSGKAKHLEYRARAHQPAMLCTLVMTDNVDSRGVARYPVGTMPVMDPQTGETLVDELGRRSFTTSIAYGPTIGKNIALAYLPWAYCQEGRKLNVEYFGETYPVEVAAVGYRPLYDPENLNPRS 323

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A806NEB6_BRUSS (Aminomethyltransferase folate-binding domain protein n=2 Tax=Brucella TaxID=234 RepID=A0A806NEB6_BRUSS)

HSP 1 Score: 298 bits (763), Expect = 2.440e-99
Identity = 144/163 (88.34%), Postives = 154/163 (94.48%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYAN+RRMEKSLRLQNADLLTEYNLLEADL RPKVKEADFRGKAKHLE++AR+HQPAMLCTLVMT+N D  GVARYPVGIMPV+DP TGETLVD LGRRSFTTSVAYGPT+GKNIALAYLPW+YCQ GRKL VEYFG+TYPVEVA +GYKPLYDPENLKPRS
Sbjct:  175 ETYANTRRMEKSLRLQNADLLTEYNLLEADLARPKVKEADFRGKAKHLEYKAREHQPAMLCTLVMTDNVDKNGVARYPVGIMPVLDPETGETLVDALGRRSFTTSVAYGPTIGKNIALAYLPWAYCQPGRKLHVEYFGQTYPVEVAAVGYKPLYDPENLKPRS 337

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A4R0PES3_9HYPH (FAD-dependent oxidoreductase n=1 Tax=Oricola cellulosilytica TaxID=1429082 RepID=A0A4R0PES3_9HYPH)

HSP 1 Score: 312 bits (799), Expect = 6.660e-99
Identity = 152/163 (93.25%), Postives = 158/163 (96.93%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNL EADL RPKVKEADFRGKAKHLE+RAR+HQPAMLCTLVMT+NTDA GVARYPVGIMPVMDP TGETLVDELGRRSFTTSVAYGPT+GKNIALAYLPW+YCQEGRKL VEYFGETYPVEVAG+GYKPLYDPENLKPRS
Sbjct:  691 ETYANSRRMEKSLRLQNADLLTEYNLYEADLARPKVKEADFRGKAKHLEYRAREHQPAMLCTLVMTDNTDANGVARYPVGIMPVMDPETGETLVDELGRRSFTTSVAYGPTIGKNIALAYLPWNYCQEGRKLSVEYFGETYPVEVAGVGYKPLYDPENLKPRS 853

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: B9TKP0_RICCO (Fad oxidoreductase, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9TKP0_RICCO)

HSP 1 Score: 296 bits (759), Expect = 9.880e-99
Identity = 144/163 (88.34%), Postives = 154/163 (94.48%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNLLEADL RPKVK+ADFRGKAKHLE+RAR+HQPAMLCTLV+T+N DA GVARYPVGI+PVMDP TGETLVD+LGRRSFTTS+AYGPT+GKNIALAYLPWSY QEGRKL VEYFGE YPVEV G+GYKPLYD ENLKPRS
Sbjct:  175 ETYANSRRMEKSLRLQNADLLTEYNLLEADLARPKVKDADFRGKAKHLEYRAREHQPAMLCTLVVTDNIDANGVARYPVGILPVMDPETGETLVDDLGRRSFTTSIAYGPTIGKNIALAYLPWSYAQEGRKLQVEYFGEIYPVEVVGVGYKPLYDAENLKPRS 337

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A4S5JF05_9HYPH (FAD-dependent oxidoreductase n=6 Tax=Sinorhizobium/Ensifer group TaxID=227292 RepID=A0A4S5JF05_9HYPH)

HSP 1 Score: 311 bits (796), Expect = 1.840e-98
Identity = 151/163 (92.64%), Postives = 157/163 (96.32%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNLLEADL RPKVKEADFRGKAKHLEHRAR HQPAMLCTLVMTEN D+KGVARYPVGI+PVMDP TGETLVDELGRRSFTTS+AYGPT+GKNIALAYLPWSYCQ GRKL VEYFGETYPVEVAG+GYKPLYDPENLKPR+
Sbjct:  691 ETYANSRRMEKSLRLQNADLLTEYNLLEADLARPKVKEADFRGKAKHLEHRARPHQPAMLCTLVMTENVDSKGVARYPVGILPVMDPETGETLVDELGRRSFTTSIAYGPTIGKNIALAYLPWSYCQVGRKLKVEYFGETYPVEVAGVGYKPLYDPENLKPRT 853

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A2W4R1T3_9PROT (Dehydrogenase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4R1T3_9PROT)

HSP 1 Score: 295 bits (755), Expect = 2.090e-98
Identity = 143/163 (87.73%), Postives = 153/163 (93.87%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRR+EKSLRLQNADLLTEYNL EADL RPKVKEADFRGKAKHLE++AR HQPAMLCTLVMT+NTD+KGVARYPVG MPV+DP TGE LVDELGRRS+TTSVAYGPT+GKNIALAYLPWSYCQEGRKL VEYF E +PVEVA +GYKPLYDPENLKPRS
Sbjct:  155 ETYANSRRLEKSLRLQNADLLTEYNLFEADLARPKVKEADFRGKAKHLEYKARPHQPAMLCTLVMTDNTDSKGVARYPVGNMPVLDPDTGEVLVDELGRRSYTTSVAYGPTIGKNIALAYLPWSYCQEGRKLEVEYFAERFPVEVAAVGYKPLYDPENLKPRS 317

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BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A8I1P643_9HYPH (GcvT family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A8I1P643_9HYPH)

HSP 1 Score: 307 bits (786), Expect = 5.470e-97
Identity = 149/163 (91.41%), Postives = 156/163 (95.71%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYANSRRMEKSLRLQNADLLTEYNL EADL RPKVKEADFRGKAKHLE+RAR HQPAMLCTLVMT+N D+KG+ARYPVG MPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPW+YCQEGRKL VEYFGET+PVEVA +GYKPLYDPENLKPRS
Sbjct:  691 ETYANSRRMEKSLRLQNADLLTEYNLFEADLARPKVKEADFRGKAKHLEYRARPHQPAMLCTLVMTDNRDSKGIARYPVGTMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWAYCQEGRKLAVEYFGETFPVEVAAVGYKPLYDPENLKPRS 853

[Close]

BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Match: A0A3S3TA23_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. M2A.F.Ca.ET.039.01.1.1 TaxID=2496746 RepID=A0A3S3TA23_9HYPH)

HSP 1 Score: 301 bits (771), Expect = 7.910e-97
Identity = 147/163 (90.18%), Postives = 156/163 (95.71%), Query Frame = 1

Query:    1 ETYANSRRMEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPAMLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAYGPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPENLKPRS 489
            ETYAN+RRMEKSLRLQNADLLTEYNLLEADL RPKVK+ DF GKAKHLE+RAR+HQPAMLCTLVMTENTD+KGVARYPVG MPV DPA+GETLVDELGRRSFTTSVAYGPT+GKNIALAYLPW+YCQEG KL VEYFGETYPVEVAG+GYKPLYDPENLKPRS
Sbjct:  474 ETYANTRRMEKSLRLQNADLLTEYNLLEADLARPKVKDNDFCGKAKHLEYRAREHQPAMLCTLVMTENTDSKGVARYPVGTMPVQDPASGETLVDELGRRSFTTSVAYGPTIGKNIALAYLPWAYCQEGCKLQVEYFGETYPVEVAGVGYKPLYDPENLKPRS 636

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig55515.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A530BK97_9HYPH	4.150e-104	92.02	Aminomethyl transferase family protein (Fragment) ...	[more]
A0A530Y6H8_9HYPH	6.930e-102	88.96	Aminomethyl transferase family protein (Fragment) ...	[more]
A0A530RAX7_9HYPH	1.900e-100	88.96	Aminomethyl transferase family protein (Fragment) ...	[more]
A0A806NEB6_BRUSS	2.440e-99	88.34	Aminomethyltransferase folate-binding domain prote...	[more]
A0A4R0PES3_9HYPH	6.660e-99	93.25	FAD-dependent oxidoreductase n=1 Tax=Oricola cellu...	[more]
B9TKP0_RICCO	9.880e-99	88.34	Fad oxidoreductase, putative n=1 Tax=Ricinus commu...	[more]
A0A4S5JF05_9HYPH	1.840e-98	92.64	FAD-dependent oxidoreductase n=6 Tax=Sinorhizobium...	[more]
A0A2W4R1T3_9PROT	2.090e-98	87.73	Dehydrogenase (Fragment) n=1 Tax=Proteobacteria ba...	[more]
A0A8I1P643_9HYPH	5.470e-97	91.41	GcvT family protein n=1 Tax=Hyphomicrobiales bacte...	[more]
A0A3S3TA23_9HYPH	7.910e-97	90.18	FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig55515	contig	P-wetherbeei_contig55515:32..523 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1380391.JIAS01000011_gene5203
PFAMs	DAO,FAO_M,GCV_T,GCV_T_C
Model size	492
Max annot lvl	204441\|Rhodospirillales
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.66e-93
EggNOG OGs	COG0404@1\|root,COG0665@1\|root,COG0404@2\|Bacteria,COG0665@2\|Bacteria,1MUXJ@1224\|Proteobacteria,2TRGS@28211\|Alphaproteobacteria,2JP8Q@204441\|Rhodospirillales
Description	FAD dependent oxidoreductase central domain
Cds size	468
COG category	E

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186826.7744057-CDS-P-wetherbeei_contig55515:31..499	1683186826.7744057-CDS-P-wetherbeei_contig55515:31..499	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig55515 32..499 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186826.7876155-UTR-P-wetherbeei_contig55515:499..523	1683186826.7876155-UTR-P-wetherbeei_contig55515:499..523	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig55515 500..523 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig55515.1.1	prot_P-wetherbeei_contig55515.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig55515 32..499 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig55515:32..523-
coding sequence from alignment at P-wetherbeei_contig55515:32..523-

protein sequence of mRNA_P-wetherbeei_contig55515.1.1

>prot_P-wetherbeei_contig55515.1.1 ID=prot_P-wetherbeei_contig55515.1.1|Name=mRNA_P-wetherbeei_contig55515.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MEKSLRLQNADLLTEYNLLEADLQRPKVKEADFRGKAKHLEHRARKHQPA
MLCTLVMTENTDAKGVARYPVGIMPVMDPATGETLVDELGRRSFTTSVAY
GPTLGKNIALAYLPWSYCQEGRKLIVEYFGETYPVEVAGIGYKPLYDPEN
LKPRS*

mRNA from alignment at P-wetherbeei_contig55515:32..523-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig55515.1.1 ID=mRNA_P-wetherbeei_contig55515.1.1|Name=mRNA_P-wetherbeei_contig55515.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig55515:32..523- (Phaeothamnion wetherbeei SAG_119_79)
GAGACCTACGCCAACAGCCGCCGCATGGAAAAGAGCCTGCGCCTGCAGAA
CGCGGACCTGCTGACCGAATACAATCTGCTCGAGGCCGACCTGCAGCGCC
CGAAGGTCAAGGAAGCCGACTTCCGCGGCAAGGCGAAGCATTTGGAGCAC
CGCGCCCGCAAGCATCAGCCGGCCATGCTCTGCACCTTGGTGATGACCGA
GAACACCGATGCCAAGGGCGTTGCCCGCTATCCCGTCGGCATCATGCCGG
TGATGGACCCGGCGACCGGCGAGACGCTCGTCGACGAACTCGGCCGCCGC
TCCTTCACCACCTCGGTCGCCTACGGCCCGACCCTCGGCAAGAACATCGC
GCTCGCGTACCTGCCTTGGTCCTATTGCCAGGAAGGCCGCAAGCTGATCG
TCGAATATTTCGGCGAGACCTACCCGGTCGAAGTCGCCGGCATCGGCTAC
AAGCCGCTCTATGATCCGGAGAATTTGAAGCCCCGGAGCTAA

Coding sequence (CDS) from alignment at P-wetherbeei_contig55515:32..523-

>mRNA_P-wetherbeei_contig55515.1.1 ID=mRNA_P-wetherbeei_contig55515.1.1|Name=mRNA_P-wetherbeei_contig55515.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig55515:32..523- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAAGAGCCTGCGCCTGCAGAACGCGGACCTGCTGACCGAATACAA
TCTGCTCGAGGCCGACCTGCAGCGCCCGAAGGTCAAGGAAGCCGACTTCC
GCGGCAAGGCGAAGCATTTGGAGCACCGCGCCCGCAAGCATCAGCCGGCC
ATGCTCTGCACCTTGGTGATGACCGAGAACACCGATGCCAAGGGCGTTGC
CCGCTATCCCGTCGGCATCATGCCGGTGATGGACCCGGCGACCGGCGAGA
CGCTCGTCGACGAACTCGGCCGCCGCTCCTTCACCACCTCGGTCGCCTAC
GGCCCGACCCTCGGCAAGAACATCGCGCTCGCGTACCTGCCTTGGTCCTA
TTGCCAGGAAGGCCGCAAGCTGATCGTCGAATATTTCGGCGAGACCTACC
CGGTCGAAGTCGCCGGCATCGGCTACAAGCCGCTCTATGATCCGGAGAAT
TTGAAGCCCCGGAGCTAA