mRNA_P-wetherbeei_contig55461.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55461.1.1
Unique NamemRNA_P-wetherbeei_contig55461.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55461.1.1 vs. uniprot
Match: A0A364WDX8_9SPHI (Uncharacterized protein n=2 Tax=Sphingobacteriaceae TaxID=84566 RepID=A0A364WDX8_9SPHI)

HSP 1 Score: 49.3 bits (116), Expect = 8.270e-5
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   46 FIENWRS-AGTAQLDISPKPQDGVSNAQITIFGNTITSGIPTFFINDGSGVSSAAHHNQALAGKG-DSYLNAQAGMLGVGTSSP 291
            F+ N  S +G   +DI+P P D VSNA I  F  + T+G     +  G+G  +    N  L+G G +SY+NA AG +G+GT+SP
Sbjct:   22 FVLNKASLSGNTLVDINPVPSDTVSNAYIRFFRGSKTTGGVYLQLCSGNGTYTI---NTNLSGNGANSYINALAGNVGIGTTSP 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55461.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A364WDX8_9SPHI8.270e-540.48Uncharacterized protein n=2 Tax=Sphingobacteriacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55461contigP-wetherbeei_contig55461:226..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.3216112-UTR-P-wetherbeei_contig55461:225..2461683186826.3216112-UTR-P-wetherbeei_contig55461:225..246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55461 226..246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.3300064-CDS-P-wetherbeei_contig55461:246..5161683186826.3300064-CDS-P-wetherbeei_contig55461:246..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55461 247..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55461.1.1prot_P-wetherbeei_contig55461.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55461 247..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55461.1.1

>prot_P-wetherbeei_contig55461.1.1 ID=prot_P-wetherbeei_contig55461.1.1|Name=mRNA_P-wetherbeei_contig55461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MYWHNQAAFIENWRSAGTAQLDISPKPQDGVSNAQITIFGNTITSGIPTF
FINDGSGVSSAAHHNQALAGKGDSYLNAQAGMLGVGTSSP
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mRNA from alignment at P-wetherbeei_contig55461:226..516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55461.1.1 ID=mRNA_P-wetherbeei_contig55461.1.1|Name=mRNA_P-wetherbeei_contig55461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig55461:226..516+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTCTAACAATTTCTTCGCAATGTATTGGCATAACCAAGCTGCATTCAT
TGAAAATTGGCGTTCCGCCGGCACAGCCCAACTCGATATTTCACCGAAGC
CTCAGGACGGGGTAAGCAACGCACAGATAACAATCTTCGGCAACACAATC
ACTTCCGGCATTCCGACGTTTTTCATCAACGACGGTTCCGGTGTGTCTAG
TGCTGCTCATCATAACCAAGCCTTGGCTGGTAAGGGTGATTCATACCTAA
ACGCGCAGGCCGGCATGCTGGGGGTTGGCACATCTTCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55461:226..516+

>mRNA_P-wetherbeei_contig55461.1.1 ID=mRNA_P-wetherbeei_contig55461.1.1|Name=mRNA_P-wetherbeei_contig55461.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig55461:226..516+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATTGGCATAACCAAGCTGCATTCATTGAAAATTGGCGTTCCGCCGG
CACAGCCCAACTCGATATTTCACCGAAGCCTCAGGACGGGGTAAGCAACG
CACAGATAACAATCTTCGGCAACACAATCACTTCCGGCATTCCGACGTTT
TTCATCAACGACGGTTCCGGTGTGTCTAGTGCTGCTCATCATAACCAAGC
CTTGGCTGGTAAGGGTGATTCATACCTAAACGCGCAGGCCGGCATGCTGG
GGGTTGGCACATCTTCGCCG
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