mRNA_P-wetherbeei_contig5546.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5546.2.1
Unique NamemRNA_P-wetherbeei_contig5546.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5546.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5546contigP-wetherbeei_contig5546:811..1902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.2648637-CDS-P-wetherbeei_contig5546:810..13951683186826.2648637-CDS-P-wetherbeei_contig5546:810..1395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5546 811..1395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.2739775-UTR-P-wetherbeei_contig5546:1395..19021683186826.2739775-UTR-P-wetherbeei_contig5546:1395..1902Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5546 1396..1902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5546.2.1prot_P-wetherbeei_contig5546.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5546 811..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5546.2.1

>prot_P-wetherbeei_contig5546.2.1 ID=prot_P-wetherbeei_contig5546.2.1|Name=mRNA_P-wetherbeei_contig5546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MDPPMAPPRPHAAVRAGLSGGSDSPPARYNGAFKAGQARLALDSASPAPP
RSVKRAKRGEPAPFRRAPPYGQNVTFAMEAPSPMLASRSAGLRDASRGEE
LDPAAATAAAATAAAAGAANAEFYNHRHQYERHVPDTPMRRPAFGSWSPP
PSPLPSPPSPGALHADDHKGAGSQDEAYYGLRGGGGGDGAGGMDD
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mRNA from alignment at P-wetherbeei_contig5546:811..1902-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5546.2.1 ID=mRNA_P-wetherbeei_contig5546.2.1|Name=mRNA_P-wetherbeei_contig5546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig5546:811..1902- (Phaeothamnion wetherbeei SAG_119_79)
CAACTTCAGCTTTTGGAATGCAGTATGGATTCTAAAAGCTCCTGTGCTCT
GATTACCAGAGGTTTGGATCACGCCTGCAGCCAGGTGCAAACAACCAGCT
GCTTCGCCAACCTTCGCCGCGAAAGCCGAACGTGCTGGCCTCTTCTATCT
TTCTTTCTTCCGCCGCCGCCGCCGCCTTCGAGTACGAGGGTCTGATTCTA
ACCGCAAATCATCAACTGCCACCTTGAGAAAACCTTGGGGAATAAAGAAA
GCGAGCACGTACGACCACATATTAACTAGACTCGTAAAGACCGCGAGCTT
ATCATCGTCCTGGCTGCGGGAGAGGTGATATTTTGGCAAAGAAAGGTATA
AAATTTTGGCGCGAAAAAGGAAACCTCACTTGGAGGAAGAGGGAAGGTTG
GAGAACGAAGTGCAGAGGCTTACGATTGTACTCGTGGGCCAGGCCTGGGA
AAGGCACCGCAGTATCTCTATAAACCTTGAGGAAAAAAGGATTTGCGAGT
GGAATCCATGGATCCTCCTATGGCGCCGCCGCGGCCGCACGCGGCGGTGC
GTGCAGGTTTAAGTGGAGGCTCTGACAGCCCTCCCGCGAGGTACAACGGC
GCATTCAAAGCGGGACAGGCGCGCTTGGCGCTCGATAGTGCGTCTCCGGC
GCCACCCCGCTCCGTCAAGCGCGCCAAGAGAGGGGAGCCGGCGCCCTTCC
GACGAGCGCCGCCGTACGGCCAAAACGTCACCTTTGCGATGGAGGCACCG
TCGCCGATGCTGGCGTCGCGATCTGCGGGCTTGCGGGATGCCTCGCGCGG
AGAGGAGCTCGACCCGGCAGCAGCGACGGCGGCGGCTGCCACAGCGGCCG
CGGCTGGCGCCGCCAACGCCGAGTTCTACAACCACCGGCACCAGTACGAG
CGGCACGTGCCTGACACCCCCATGCGTCGACCCGCGTTCGGCTCGTGGTC
GCCGCCACCCTCGCCCCTGCCCTCGCCGCCATCGCCCGGTGCTCTGCACG
CGGACGACCACAAAGGCGCAGGGAGCCAAGACGAGGCCTACTACGGCTTG
CGCGGCGGCGGCGGTGGCGATGGCGCCGGTGGGATGGACGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5546:811..1902-

>mRNA_P-wetherbeei_contig5546.2.1 ID=mRNA_P-wetherbeei_contig5546.2.1|Name=mRNA_P-wetherbeei_contig5546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig5546:811..1902- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCTCCTATGGCGCCGCCGCGGCCGCACGCGGCGGTGCGTGCAGG
TTTAAGTGGAGGCTCTGACAGCCCTCCCGCGAGGTACAACGGCGCATTCA
AAGCGGGACAGGCGCGCTTGGCGCTCGATAGTGCGTCTCCGGCGCCACCC
CGCTCCGTCAAGCGCGCCAAGAGAGGGGAGCCGGCGCCCTTCCGACGAGC
GCCGCCGTACGGCCAAAACGTCACCTTTGCGATGGAGGCACCGTCGCCGA
TGCTGGCGTCGCGATCTGCGGGCTTGCGGGATGCCTCGCGCGGAGAGGAG
CTCGACCCGGCAGCAGCGACGGCGGCGGCTGCCACAGCGGCCGCGGCTGG
CGCCGCCAACGCCGAGTTCTACAACCACCGGCACCAGTACGAGCGGCACG
TGCCTGACACCCCCATGCGTCGACCCGCGTTCGGCTCGTGGTCGCCGCCA
CCCTCGCCCCTGCCCTCGCCGCCATCGCCCGGTGCTCTGCACGCGGACGA
CCACAAAGGCGCAGGGAGCCAAGACGAGGCCTACTACGGCTTGCGCGGCG
GCGGCGGTGGCGATGGCGCCGGTGGGATGGACGAT
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