mRNA_P-wetherbeei_contig55456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55456.1.1
Unique NamemRNA_P-wetherbeei_contig55456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55456.1.1 vs. uniprot
Match: A0A523P1T2_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P1T2_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 4.390e-8
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    1 KSVSSATASKLIIEPRVSAMVSFSADRTRDVARITLRNVVMLGTTIYDLPLASLDRNLIDSVVELVTTQGRSFYALSIAAAQQ 249
            +S S A  +K+ IEP V A ++ SA+       ITLRNV++LGTT Y+L    +DR+ IDS+  L++ Q  +FY L    + Q
Sbjct:  131 RSASGAGVNKVTIEPTVPAALTVSANPRVGAITITLRNVLLLGTTQYELASERMDRSFIDSLTGLISGQLSAFYTLGTKVSSQ 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A523P1T2_9PROT4.390e-840.96Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55456contigP-wetherbeei_contig55456:2..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.187212-CDS-P-wetherbeei_contig55456:1..2651683186826.187212-CDS-P-wetherbeei_contig55456:1..265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55456 2..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55456.1.1prot_P-wetherbeei_contig55456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55456 2..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55456.1.1

>prot_P-wetherbeei_contig55456.1.1 ID=prot_P-wetherbeei_contig55456.1.1|Name=mRNA_P-wetherbeei_contig55456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
KSVSSATASKLIIEPRVSAMVSFSADRTRDVARITLRNVVMLGTTIYDLP
LASLDRNLIDSVVELVTTQGRSFYALSIAAAQQRKLS*
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mRNA from alignment at P-wetherbeei_contig55456:2..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55456.1.1 ID=mRNA_P-wetherbeei_contig55456.1.1|Name=mRNA_P-wetherbeei_contig55456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig55456:2..265+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAGCGTGTCCTCGGCCACTGCCAGCAAACTTATCATCGAGCCGCGGGT
GTCAGCCATGGTCAGTTTCAGCGCCGACCGCACACGCGATGTGGCGCGCA
TCACTTTGCGTAATGTAGTGATGCTGGGCACCACCATCTATGATTTGCCG
CTGGCAAGCCTGGACCGCAATCTTATCGACTCAGTGGTCGAACTCGTCAC
CACCCAGGGGCGTAGTTTCTACGCCCTCAGCATTGCCGCCGCCCAGCAGC
GCAAGCTCAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55456:2..265+

>mRNA_P-wetherbeei_contig55456.1.1 ID=mRNA_P-wetherbeei_contig55456.1.1|Name=mRNA_P-wetherbeei_contig55456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig55456:2..265+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAGCGTGTCCTCGGCCACTGCCAGCAAACTTATCATCGAGCCGCGGGT
GTCAGCCATGGTCAGTTTCAGCGCCGACCGCACACGCGATGTGGCGCGCA
TCACTTTGCGTAATGTAGTGATGCTGGGCACCACCATCTATGATTTGCCG
CTGGCAAGCCTGGACCGCAATCTTATCGACTCAGTGGTCGAACTCGTCAC
CACCCAGGGGCGTAGTTTCTACGCCCTCAGCATTGCCGCCGCCCAGCAGC
GCAAGCTCAGCTGA
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