mRNA_P-wetherbeei_contig55455.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55455.1.1
Unique NamemRNA_P-wetherbeei_contig55455.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: D7FPX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX2_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-21
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            RRGGEFKLW   ALQGV +++ AVEVLK LK H D DVR+V+ ELLYIA+AP+LALN ++FV FPD   +
Sbjct:  162 RRGGEFKLWAAQALQGVNRNNQAVEVLKSLKSHRDFDVRKVSAELLYIAQAPQLALNGEDFVDFPDTSGI 231          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A835ZHV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.610e-16
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAF 192
            RRGGEFKLWL  ALQGV  +D AV +L+ ++ H D+DVR VA+ELLYIA APKL L + + V F
Sbjct:  154 RRGGEFKLWLAQALQGVLDNDGAVTLLRSMRTHPDRDVRTVAKELLYIATAPKLDLEAADLVTF 217          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: M1VAQ1_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VAQ1_CYAM1)

HSP 1 Score: 68.9 bits (167), Expect = 4.550e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            R GGE+ LWL  AL    ++  A EVL+RL++H D+DVRQVA  LL+I +AP+L L  ++FV   D D++
Sbjct:  208 RLGGEYLLWLAQALDAQGKNARAQEVLRRLQYHKDRDVRQVAESLLFILQAPRLRLGPESFVKI-DLDAL 276          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A7J7ICZ3_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICZ3_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 1.570e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFV 186
            R GGE+ LWL  AL    ++  A EVL+RL +H D DVR+VA  LLYI +AP+L L  ++FV
Sbjct:  197 RLGGEYLLWLAQALDAQGKNTRAQEVLRRLHYHRDNDVRRVAENLLYILQAPRLRLGPESFV 258          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: B0JPJ9_MICAN (Uncharacterized protein n=75 Tax=Chroococcales TaxID=1118 RepID=B0JPJ9_MICAN)

HSP 1 Score: 58.9 bits (141), Expect = 3.950e-9
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            R GGE ++WL++A QG+ + + A E+ K+L  H    +R+ A+ LLYI EAP+L    +     PD D +
Sbjct:   42 REGGEIQIWLISAHQGLGEGEKASEICKQLITHPIYQIREQAKRLLYIIEAPRLKRPDEWMTKIPDLDKL 111          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A2T1LYE3_9CHRO (Uncharacterized protein n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1LYE3_9CHRO)

HSP 1 Score: 55.5 bits (132), Expect = 8.320e-8
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            R+GGE + W+VTA QG+ + + A  + ++L  H   D+R  A+++LYI EAP+L    +     PD + +
Sbjct:   42 RQGGEIQTWIVTAYQGMDKVEEATSLCRQLTTHPIYDIRNRAKQILYILEAPRLQRPPEWMSKIPDLEKL 111          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A8J7DA46_9CYAN (Tetratricopeptide repeat protein n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7DA46_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.740e-7
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 GGEFKLWLVTALQ-GVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            GGE ++WLV A   G RQ D A+ + +RL  H D + +Q ++ LLYI EAP+LAL  +     PD   +
Sbjct:   45 GGEIQMWLVNAYAAGGRQAD-AIALCRRLTRHPDTETKQQSKRLLYILEAPRLALKPEWVTQIPDLSGL 112          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A8J2X818_9CHRO (Uncharacterized protein n=1 Tax=Chroococcus sp. FPU101 TaxID=1974212 RepID=A0A8J2X818_9CHRO)

HSP 1 Score: 53.5 bits (127), Expect = 4.540e-7
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            R GGE + WLVTA Q + + D A  + ++L  H   D+R  A+++LYI EAP+L          PD + +
Sbjct:   42 RSGGEIQTWLVTAYQAMGKLDEATSLCRQLTTHPIYDIRNQAKQILYILEAPRLQRPDAWMSKIPDLEKL 111          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: Q31N44_SYNE7 (Uncharacterized protein n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=Q31N44_SYNE7)

HSP 1 Score: 52.8 bits (125), Expect = 1.070e-6
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    7 GGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            G E + WL TA Q +   + A  V ++L  H  ++ RQ+A +LLYI EAP+L   +D  V  PD  S+
Sbjct:   46 GAEIRYWLATAYQAIGDIEAAKTVCRQLAKHPLREQRQLAAQLLYILEAPRLERRADWQVEIPDLTSL 113          
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Match: A0A3G6X1W3_SYNEL (Uncharacterized protein n=2 Tax=Synechococcus elongatus TaxID=32046 RepID=A0A3G6X1W3_SYNEL)

HSP 1 Score: 51.2 bits (121), Expect = 4.100e-6
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = 1
Query:    7 GGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAEAPKLALNSDNFVAFPDFDSV 210
            G + + WL TA Q     + A    ++L  H  ++ RQ+A +LLYI EAPKLA  +D  V  PD  S+
Sbjct:   46 GADIRYWLATAYQASGDIEAARSACRQLANHPLREQRQLAAQLLYILEAPKLARRADWQVEIPDLTSL 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55455.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FPX2_ECTSI1.260e-2164.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHV4_9STRA1.610e-1660.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M1VAQ1_CYAM14.550e-1248.57Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A7J7ICZ3_9RHOD1.570e-1151.61Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
B0JPJ9_MICAN3.950e-938.57Uncharacterized protein n=75 Tax=Chroococcales Tax... [more]
A0A2T1LYE3_9CHRO8.320e-835.71Uncharacterized protein n=1 Tax=Aphanothece hegewa... [more]
A0A8J7DA46_9CYAN3.740e-742.03Tetratricopeptide repeat protein n=1 Tax=Romeria a... [more]
A0A8J2X818_9CHRO4.540e-737.14Uncharacterized protein n=1 Tax=Chroococcus sp. FP... [more]
Q31N44_SYNE71.070e-639.71Uncharacterized protein n=3 Tax=Synechococcus elon... [more]
A0A3G6X1W3_SYNEL4.100e-639.71Uncharacterized protein n=2 Tax=Synechococcus elon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55455contigP-wetherbeei_contig55455:7..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog402777.KB235898_gene5130
PFAMsDUF3153,TPR_19
Model size210
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.96e-10
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G6IQ@1117|Cyanobacteria,1HBJ8@1150|Oscillatoriales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008350.1
DescriptionSPTR Alr1246 protein
Cds size210
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.13884-CDS-P-wetherbeei_contig55455:6..1261683186826.13884-CDS-P-wetherbeei_contig55455:6..126Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55455 7..126 +
1683186826.1494462-CDS-P-wetherbeei_contig55455:427..5171683186826.1494462-CDS-P-wetherbeei_contig55455:427..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55455 428..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55455.1.1prot_P-wetherbeei_contig55455.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55455 7..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55455.1.1

>prot_P-wetherbeei_contig55455.1.1 ID=prot_P-wetherbeei_contig55455.1.1|Name=mRNA_P-wetherbeei_contig55455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
RRGGEFKLWLVTALQGVRQDDHAVEVLKRLKFHGDKDVRQVARELLYIAE
APKLALNSDNFVAFPDFDSV
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mRNA from alignment at P-wetherbeei_contig55455:7..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55455.1.1 ID=mRNA_P-wetherbeei_contig55455.1.1|Name=mRNA_P-wetherbeei_contig55455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=511bp|location=Sequence derived from alignment at P-wetherbeei_contig55455:7..517+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCGGCGGCGAGTTCAAGCTGTGGCTCGTGACGGCGCTGCAGGGTGT GCGGCAGGATGACCACGCCGTCGAGGTGCTGAAGCGGCTCAAGTTCCACG GCGACAAGGATGTCCGCCAGGTGCGTGATTCGTTTCGACTTGGGCTGGCT TGGTCGGGCAAAGGCCTGCAACCAAACTTTTTTTGTTTCATTTTAGCCTG AACAAGAAATGCCGTTGCGTTTTTCCTCGCTCTTTGCCGCGCGTGCTCGG CCCGGACTACCGCACTAGGAGCTTCCAAAAGCTGCTTTACTGGGAGCTTT CAAATGGGATGCTGCTGTTGCATGTTCCCAGTTTGTCTCCGATTCTCCGA TCTCGCTGCCGTTCCCAAGCGTTCTTACTCTGCTACCACCGCGAACAACG CGTTGCCCTCGGACCAACCAGGTGGCGCGCGAGCTTTTATACATCGCGGA GGCCCCCAAACTCGCCCTCAATTCCGACAACTTTGTCGCCTTTCCCGACT TTGACAGTGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55455:7..517+

>mRNA_P-wetherbeei_contig55455.1.1 ID=mRNA_P-wetherbeei_contig55455.1.1|Name=mRNA_P-wetherbeei_contig55455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig55455:7..517+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCGGCGGCGAGTTCAAGCTGTGGCTCGTGACGGCGCTGCAGGGTGT
GCGGCAGGATGACCACGCCGTCGAGGTGCTGAAGCGGCTCAAGTTCCACG
GCGACAAGGATGTCCGCCAGGTGGCGCGCGAGCTTTTATACATCGCGGAG
GCCCCCAAACTCGCCCTCAATTCCGACAACTTTGTCGCCTTTCCCGACTT
TGACAGTGTC
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