mRNA_P-wetherbeei_contig5544.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5544.1.1
Unique NamemRNA_P-wetherbeei_contig5544.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A7S2WS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS98_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.860e-35
Identity = 72/144 (50.00%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 STLGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLAT---QAAVA----AYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            S +G S R +V  AV  ALLVRRD   L WV+G++ NA L+KVLK+L+N +RPEG+   DPGMPSSHA SLFFL +++  A +   P   PL P  T    A +A    AYA +ASAWRV  GYH+  Q++VG V G+    LW
Sbjct:   43 SAIGSSARILVGSAVAVALLVRRDAAALGWVLGALLNAVLAKVLKRLINQSRPEGARSDDPGMPSSHAQSLFFLASFLAAAAQFWEPLPSPLLPTYTAGHSAGIAVLLLAYAWLASAWRVGAGYHTAPQVLVGGVVGSLTGMLW 186          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: K8Z811_NANGC (Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z811_NANGC)

HSP 1 Score: 123 bits (309), Expect = 4.970e-32
Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 AWSTLGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIAL--RHGS---PAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            A+  LG STRW VA  V   LLVRRD   + + +G++ NA L K+LK+L+   RP+G+ L+DPGMPSSHAM+LF++  ++  AL  + G    P W PLD L T A    Y  +ASAWRV  G H++AQI+VGA  G      W
Sbjct:  126 AFQLLGKSTRWTVASLVAVMLLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGIGVLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILVGAGVGGGVGLAW 269          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A6U4CT78_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CT78_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.690e-31
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   13 LGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVI-----------IALRHGSPAWC-PLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            +G ST+W V+G V AAL++RRD   LA+V+GSV NA  SK+LK+LLN  RP+ +   DPGMPSSHA SLFF+G Y +           +A   G PA   P   LA    + AY    + WRV VGYH+  Q+ VGAV G+A +  W
Sbjct:   35 IGRSTKWTVSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILAYISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGW 181          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A7S3XLH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLH0_HETAK)

HSP 1 Score: 120 bits (302), Expect = 1.000e-30
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    4 WSTLGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDL--QDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGT 399
            ++ +G STRW VA +V  +L+  RDP TL+ VIGSV NA LSK+LKK++N +RPE  +   +  GMPSSHAMSLFF   ++ I        WCP++PL     +  YAVIASAWRV    H+  Q+  GA+ GT
Sbjct:  103 FNAIGKSTRWTVALSVAFSLVTLRDPATLSMVIGSVCNAVLSKILKKIVNQSRPELGEAVKESSGMPSSHAMSLFFFAGFLSIEAITNLATWCPVNPLIVVCFLYTYAVIASAWRVFSELHTLPQVAAGALCGT 236          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A0G4EJI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJI9_VITBC)

HSP 1 Score: 120 bits (302), Expect = 2.180e-30
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   16 GLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGS--PAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            GLS R++V+G V  AL++RRD     WVIGS+ NA L KVLK+L NH+RP+ + + DPGMPSSHAMSL FL   +I A+      PAW  LD       V++YA++++ WRVR   H++ Q+ VG   G     +W
Sbjct:  134 GLSARFLVSGLVFLALVMRRDAAVTVWVIGSLLNAVLGKVLKRLFNHSRPDEATVSDPGMPSSHAMSLSFLSVSLIRAIIDADRLPAWWRLDKRWAVVLVSSYALLSAVWRVRANLHTSEQVAVGGAVGGTVGLVW 269          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: D7FNW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.950e-29
Identity = 61/135 (45.19%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   13 LGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            LG ST+W VAGAVG AL+ R D +TL +V+GS+ NA  SKVLKK +N  RP+G+ L DPGMPSSHAM+   LG Y                           A+ AS WRV+ G+H+  Q+ VGA  G   + LW
Sbjct:   18 LGSSTQWAVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDPGMPSSHAMTQTLLGMY---------------------------ALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLW 125          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A4D9CV92_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV92_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.970e-26
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   61 LLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIAL--RHGS---PAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            LLVRRD   + + +G++ NA L K+LK+L+   RP+G+ L+DPGMPSSHAM+LF++  ++  AL  + G    P W PLD L T A    Y  +ASAWRV  G H++AQI++GA  G      W
Sbjct:    2 LLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGIGMLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILIGAGVGGGVGLAW 125          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A7S1XLD3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLD3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.420e-26
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   37 VAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVI-----------IALRHGSPAWC-PLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            V+G V AAL++RRD   LA+V+GSV NA  SK+LK+LLN  RP+ +   DPGMPSSHA SLFF+G Y +           +A   G PA   P   LA    + AY    + WRV VGYH+  Q+ VGAV G+A +  W
Sbjct:   70 VSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILAYISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGW 208          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: L1JU71_GUITC (acidPPc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JU71_GUITC)

HSP 1 Score: 104 bits (260), Expect = 2.730e-25
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   22 STRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            +TRW+V+    A L+ RRD  T+A + G++ NA L K+LK+LL   RP+G+ + DPGMPSSHAMSLFFL  Y+  A+   +  W         +++  ++  ++AWRVR G+H+ AQI+VG+V G      W
Sbjct:   28 NTRWLVSLTAAAFLIWRRDAVTIAAIGGALGNAALGKLLKRLLAEKRPDGAPVSDPGMPSSHAMSLFFLSLYLSAAINVWTD-WPMAARTIVTSSLLIFSTYSAAWRVRAGFHTPAQILVGSVLGGFNGMAW 158          
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Match: A0A8J5XDL5_DIALT (acidPPc domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDL5_DIALT)

HSP 1 Score: 100 bits (248), Expect = 1.220e-23
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    4 WSTLGLS-TRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLLNHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLATQAAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW 417
            W  L L+ TR+VV+ A   AL+ R D      V G+V NA  +K+LK+L+   RP GS L DPGMPSSHA SLFF   ++ +AL    PA+     L + AA+ A A  A+  RV  G+H+ AQ+ VGA+ G + + +W
Sbjct:   13 WWRLWLAQTRYVVSLAAFCALVARDDARVTFCVAGAVGNALGNKLLKRLIAQARPSGSALHDPGMPSSHASSLFFFAAFIALALLRHPPAY----GLPSAAALVALAACAARHRVAAGFHTPAQVAVGALVGASAATIW 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5544.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WS98_9STRA2.860e-3550.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K8Z811_NANGC4.970e-3247.22Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochlo... [more]
A0A6U4CT78_9STRA8.690e-3146.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XLH0_HETAK1.000e-3048.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4EJI9_VITBC2.180e-3046.32Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D7FNW3_ECTSI1.950e-2945.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CV92_9STRA1.970e-2645.97Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XLD3_9STRA2.420e-2646.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1JU71_GUITC2.730e-2542.42acidPPc domain-containing protein n=1 Tax=Guillard... [more]
A0A8J5XDL5_DIALT1.220e-2343.17acidPPc domain-containing protein n=1 Tax=Diacrone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5544contigP-wetherbeei_contig5544:625..1545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNW3
PFAMsPAP2
Model size417
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00003,RC02120,RC03389,RC03391
KEGG koko:K07252,ko:K19737
KEGG ReactionR01004,R11216,R11218,R11220
KEGG Pathwayko00510,map00510
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006629,GO:0006638,GO:0006639,GO:0006651,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008195,GO:0008610,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046339,GO:0046460,GO:0046463,GO:0046486,GO:0047874,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue3.19e-30
EggNOG OGsCOG0671@1|root,KOG3146@2759|Eukaryota
EC2.1.1.320,3.6.1.43
Descriptiondolichyldiphosphatase activity
Cds size417
COG categoryI
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.046219-CDS-P-wetherbeei_contig5544:624..8371683186826.046219-CDS-P-wetherbeei_contig5544:624..837Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5544 625..837 +
1683186826.0604901-CDS-P-wetherbeei_contig5544:993..11121683186826.0604901-CDS-P-wetherbeei_contig5544:993..1112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5544 994..1112 +
1683186826.070616-CDS-P-wetherbeei_contig5544:1460..15451683186826.070616-CDS-P-wetherbeei_contig5544:1460..1545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5544 1461..1545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5544.1.1prot_P-wetherbeei_contig5544.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5544 625..1545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5544.1.1

>prot_P-wetherbeei_contig5544.1.1 ID=prot_P-wetherbeei_contig5544.1.1|Name=mRNA_P-wetherbeei_contig5544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
AWSTLGLSTRWVVAGAVGAALLVRRDPETLAWVIGSVANATLSKVLKKLL
NHTRPEGSDLQDPGMPSSHAMSLFFLGTYVIIALRHGSPAWCPLDPLATQ
AAVAAYAVIASAWRVRVGYHSTAQIVVGAVAGTAFSCLW
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mRNA from alignment at P-wetherbeei_contig5544:625..1545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5544.1.1 ID=mRNA_P-wetherbeei_contig5544.1.1|Name=mRNA_P-wetherbeei_contig5544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig5544:625..1545+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTGGAGCACTCTGGGCCTGAGCACGCGCTGGGTCGTCGCTGGGGCTGT GGGCGCCGCTCTCCTTGTGCGGAGAGACCCCGAGACGCTGGCGTGGGTGA TTGGGAGCGTCGCCAATGCGACCCTTTCAAAGGTGCTGAAGAAGTTGCTC AACCACACGAGGCCGGAAGGCTCGGACCTGCAGGACCCGGGCATGCCAAG TTCGCACGCCATGGTACCTCGAGGAGAGAAAGAGTGCCGTGCTTTTGGTT GTTGGCTTGCGCTCTTGCTTTGGCCGTCGTATTTTGGCCTATTTAGCCAT TCACGTACTCGTGATTTACGATTCCATCCGGCTCGCACCCCTCCCACCAC CTCTTTGTCTTTTCCGCAGTCTCTCTTTTTCCTGGGCACGTATGTAATAA TAGCGCTCCGACACGGGAGCCCGGCATGGTGTCCACTGGACCCACTGGCG ACGCAGGCCGCCGTCGCCGCCTATGCTGTCATCGCTAGGTCTGTGAATGA CTGATTGATGCCGCCGCTACTGTGCCGCTTGCCACCGCCCGCCATCACTC TTTTTTCACTTTGGTTGGAGCAAGCGAGTTCCTCCGTGAAGCTGTTTTTG ACTTCAGGCTTCCGTTCACCTTTTGGTTACACTTGATTAGTCAGATTGTT TGCCTGGCACTATCTCGGCCTTTTGAGTTTCCTGCATATTGGAACTTCGA ACGCGCTAGGTGACCTCTGCATAGGTCCCCCCCTCTTGCCTTTACGGGGT GCCCTCTTTTTCCCCTATATCAAAACACAAACGGCCTGCGGCACTGCCTA CCTTCCGCATGCTTCCGTGGTGTCGTGCGCGAGCAGCGCATGGCGGGTCC GCGTCGGGTACCACTCGACCGCCCAGATTGTCGTCGGCGCCGTCGCAGGC ACCGCCTTTTCGTGCCTCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5544:625..1545+

>mRNA_P-wetherbeei_contig5544.1.1 ID=mRNA_P-wetherbeei_contig5544.1.1|Name=mRNA_P-wetherbeei_contig5544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig5544:625..1545+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTGGAGCACTCTGGGCCTGAGCACGCGCTGGGTCGTCGCTGGGGCTGT
GGGCGCCGCTCTCCTTGTGCGGAGAGACCCCGAGACGCTGGCGTGGGTGA
TTGGGAGCGTCGCCAATGCGACCCTTTCAAAGGTGCTGAAGAAGTTGCTC
AACCACACGAGGCCGGAAGGCTCGGACCTGCAGGACCCGGGCATGCCAAG
TTCGCACGCCATGTCTCTCTTTTTCCTGGGCACGTATGTAATAATAGCGC
TCCGACACGGGAGCCCGGCATGGTGTCCACTGGACCCACTGGCGACGCAG
GCCGCCGTCGCCGCCTATGCTGTCATCGCTAGCGCATGGCGGGTCCGCGT
CGGGTACCACTCGACCGCCCAGATTGTCGTCGGCGCCGTCGCAGGCACCG
CCTTTTCGTGCCTCTGG
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