mRNA_P-wetherbeei_contig55383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55383.1.1
Unique NamemRNA_P-wetherbeei_contig55383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55383.1.1 vs. uniprot
Match: UPI001068FE5C (hypothetical protein n=1 Tax=Microvirga pakistanensis TaxID=1682650 RepID=UPI001068FE5C)

HSP 1 Score: 61.2 bits (147), Expect = 5.410e-9
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:   16 RNELETARKMWVEEASDQSIRLIGKALADLEAGISQSLQQVLAPFIGKLIPLAAMDELEKILECALKDDFKGSLFLSGPEDLVAGLKTRLEQREIDVIAEVLPG--MELKARGSNFSITTRIKGWID 390
            R EL   R++WVE+ + Q    I  A+ DLE+ +S+   ++LA  I + +   A+ E  K L   L  D    L ++GPEDL+ G++  L  R  D + E +P   +E+     + +I T++  W+D
Sbjct:   32 REELAVQREIWVEQEARQVASQIIDAIDDLESLLSERAARILASVIPEALRQNAITEFNKALSAILAGDVSPLLKVTGPEDLLKGIRDGLALR--DRVVEFVPSDVVEVTLVAGDTTIQTQLGPWVD 156
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BLAST of mRNA_P-wetherbeei_contig55383.1.1 vs. uniprot
Match: A0A4U8YUP2_METTU (Flagellar assembly protein FliH n=2 Tax=Methylocella tundrae TaxID=227605 RepID=A0A4U8YUP2_METTU)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-6
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:   37 RKMWVEEASDQSIRLIGK---ALADLEAGISQSLQQVLAPFIGKLIPLAAMDELEKILECALKDDFKGSLFLSGPEDLVAGLKTRLEQREIDVIAEVLPGMELKARGSNFSITTRIKGWIDGV 396
            R  W +   D+  RL  K   ALA++E  I  S  ++L PF+ +     A+DEL + L+  L       + ++GPEDL+A L+TRL       +    P M+++       I +RI+ WI  +
Sbjct:   89 RDRWTQ---DEGARLGAKMEAALAEIETRIGASAARILRPFLVRQAGRKAIDELAESLKQMLSGSRNPLVEITGPEDLLAALQTRLAGSAACAVWTPGPTMDVRIIADQTLIESRIQAWIQRI 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001068FE5C5.410e-931.50hypothetical protein n=1 Tax=Microvirga pakistanen... [more]
A0A4U8YUP2_METTU2.000e-630.89Flagellar assembly protein FliH n=2 Tax=Methylocel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55383contigP-wetherbeei_contig55383:2..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog420324.KI911965_gene616
Model size414
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.73e-09
EggNOG OGs2E8ME@1|root,332YW@2|Bacteria,1NAM9@1224|Proteobacteria,2V4ZU@28211|Alphaproteobacteria,1JWJC@119045|Methylobacteriaceae
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.3389614-CDS-P-wetherbeei_contig55383:1..4151683186825.3389614-CDS-P-wetherbeei_contig55383:1..415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55383 2..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55383.1.1prot_P-wetherbeei_contig55383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55383 2..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55383.1.1

>prot_P-wetherbeei_contig55383.1.1 ID=prot_P-wetherbeei_contig55383.1.1|Name=mRNA_P-wetherbeei_contig55383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
LRASHRNELETARKMWVEEASDQSIRLIGKALADLEAGISQSLQQVLAPF
IGKLIPLAAMDELEKILECALKDDFKGSLFLSGPEDLVAGLKTRLEQREI
DVIAEVLPGMELKARGSNFSITTRIKGWIDGVHGAGP*
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mRNA from alignment at P-wetherbeei_contig55383:2..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55383.1.1 ID=mRNA_P-wetherbeei_contig55383.1.1|Name=mRNA_P-wetherbeei_contig55383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig55383:2..415+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCGGGCCAGTCACAGGAATGAGCTGGAAACCGCGCGTAAAATGTGGGT
GGAAGAGGCAAGCGACCAGTCGATCAGGCTGATTGGCAAGGCTCTAGCGG
ATTTGGAAGCAGGGATCAGCCAGTCATTGCAGCAGGTGCTTGCGCCATTC
ATTGGAAAGTTGATTCCGCTGGCTGCAATGGATGAACTTGAGAAAATCCT
TGAGTGCGCCCTGAAGGACGACTTCAAGGGGTCGCTTTTCCTGTCAGGCC
CCGAGGACCTGGTTGCGGGACTCAAAACCCGGTTGGAGCAAAGGGAGATT
GATGTCATTGCGGAAGTTCTCCCGGGCATGGAGCTCAAGGCAAGGGGCAG
CAATTTTTCCATAACAACCCGCATCAAGGGCTGGATTGATGGCGTCCACG
GCGCAGGCCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55383:2..415+

>mRNA_P-wetherbeei_contig55383.1.1 ID=mRNA_P-wetherbeei_contig55383.1.1|Name=mRNA_P-wetherbeei_contig55383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig55383:2..415+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCGGGCCAGTCACAGGAATGAGCTGGAAACCGCGCGTAAAATGTGGGT
GGAAGAGGCAAGCGACCAGTCGATCAGGCTGATTGGCAAGGCTCTAGCGG
ATTTGGAAGCAGGGATCAGCCAGTCATTGCAGCAGGTGCTTGCGCCATTC
ATTGGAAAGTTGATTCCGCTGGCTGCAATGGATGAACTTGAGAAAATCCT
TGAGTGCGCCCTGAAGGACGACTTCAAGGGGTCGCTTTTCCTGTCAGGCC
CCGAGGACCTGGTTGCGGGACTCAAAACCCGGTTGGAGCAAAGGGAGATT
GATGTCATTGCGGAAGTTCTCCCGGGCATGGAGCTCAAGGCAAGGGGCAG
CAATTTTTCCATAACAACCCGCATCAAGGGCTGGATTGATGGCGTCCACG
GCGCAGGCCCATGA
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