mRNA_P-wetherbeei_contig5538.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5538.2.1
Unique NamemRNA_P-wetherbeei_contig5538.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5538.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5538contigP-wetherbeei_contig5538:2130..3024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size897
Hectar predicted targeting categoryother localisation
Exons1
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.2814527-UTR-P-wetherbeei_contig5538:2129..22891683186825.2814527-UTR-P-wetherbeei_contig5538:2129..2289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5538 2130..2289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.2904093-CDS-P-wetherbeei_contig5538:2289..30241683186825.2904093-CDS-P-wetherbeei_contig5538:2289..3024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5538 2290..3024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5538.2.1prot_P-wetherbeei_contig5538.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5538 2290..3024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5538.2.1

>prot_P-wetherbeei_contig5538.2.1 ID=prot_P-wetherbeei_contig5538.2.1|Name=mRNA_P-wetherbeei_contig5538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MFAVLNTRGASSERDGSSATLVNLLIRGKQKEGGREEEAASSHAFLRELF
AHASEVQPANLTPDLPVSLGVPRFSQQALLAGVMALLPREEQTPCITTAR
WLWSMWVLQRECIVSLSLLLQKVGAEPVVNGMHGLLAVSGGRGLPNSATP
LLFAAFARRLLEVGYGTSSSSGGQTARDVLDGLCCGRDHFSGTTREGAAV
AQRACLAVLAALCGNTSHGEGGGCGGGGGSGSASNHELDRFCRRQ
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mRNA from alignment at P-wetherbeei_contig5538:2130..3024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5538.2.1 ID=mRNA_P-wetherbeei_contig5538.2.1|Name=mRNA_P-wetherbeei_contig5538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=895bp|location=Sequence derived from alignment at P-wetherbeei_contig5538:2130..3024+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAAAAGAGGAACGTAGAGCCTCCCCCCTGTGCGATGGTCTCTTGCTCC
CATAACCTCCGCCAGGCAGCGCCGTGAGCGTCTGTTTCCGTGGTCGACAA
GCGTTTGCTGTTCGAAATTATTATCTCTTTGGTCCATTTTCGCGCGCTTT
TCATTACCGCATGTTCGCGGTTCTCAACACGCGCGGAGCAAGCAGTGAGC
GCGATGGAAGCTCGGCCACCCTGGTAAACCTGCTTATACGGGGGAAACAA
AAGGAGGGGGGGAGGGAGGAGGAAGCTGCTTCTTCGCACGCCTTTCTTCG
AGAGCTCTTTGCGCATGCTTCCGAGGTGCAACCCGCGAACTTGACGCCAG
ATCTTCCCGTCTCGCTGGGGGTGCCGCGATTCAGCCAGCAGGCGTTGCTC
GCTGGCGTGATGGCTTTGCTGCCGAGGGAAGAGCAAACACCGTGCATCAC
AACCGCCAGGTGGCTATGGTCGATGTGGGTGCTTCAGCGGGAGTGCATCG
TGTCCCTGAGCCTCTTGCTGCAAAAAGTGGGCGCCGAGCCAGTCGTGAAT
GGAATGCACGGCCTGTTGGCTGTCTCCGGTGGCCGAGGGCTCCCCAACAG
CGCCACACCACTGCTGTTCGCCGCGTTCGCACGGCGACTCCTTGAAGTTG
GCTATGGGACGAGCTCCTCTTCTGGCGGGCAGACGGCACGGGACGTCCTC
GACGGCCTCTGCTGCGGTCGCGATCATTTCAGCGGCACTACTCGCGAGGG
GGCAGCAGTTGCACAGCGCGCCTGCCTGGCCGTCCTGGCCGCCCTTTGCG
GGAACACTTCTCATGGGGAGGGGGGCGGTTGCGGTGGTGGCGGTGGCAGC
GGCAGCGCTTCCAATCATGAGCTTGACCGCTTCTGCCGTCGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5538:2130..3024+

>mRNA_P-wetherbeei_contig5538.2.1 ID=mRNA_P-wetherbeei_contig5538.2.1|Name=mRNA_P-wetherbeei_contig5538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig5538:2130..3024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGCGGTTCTCAACACGCGCGGAGCAAGCAGTGAGCGCGATGGAAG
CTCGGCCACCCTGGTAAACCTGCTTATACGGGGGAAACAAAAGGAGGGGG
GGAGGGAGGAGGAAGCTGCTTCTTCGCACGCCTTTCTTCGAGAGCTCTTT
GCGCATGCTTCCGAGGTGCAACCCGCGAACTTGACGCCAGATCTTCCCGT
CTCGCTGGGGGTGCCGCGATTCAGCCAGCAGGCGTTGCTCGCTGGCGTGA
TGGCTTTGCTGCCGAGGGAAGAGCAAACACCGTGCATCACAACCGCCAGG
TGGCTATGGTCGATGTGGGTGCTTCAGCGGGAGTGCATCGTGTCCCTGAG
CCTCTTGCTGCAAAAAGTGGGCGCCGAGCCAGTCGTGAATGGAATGCACG
GCCTGTTGGCTGTCTCCGGTGGCCGAGGGCTCCCCAACAGCGCCACACCA
CTGCTGTTCGCCGCGTTCGCACGGCGACTCCTTGAAGTTGGCTATGGGAC
GAGCTCCTCTTCTGGCGGGCAGACGGCACGGGACGTCCTCGACGGCCTCT
GCTGCGGTCGCGATCATTTCAGCGGCACTACTCGCGAGGGGGCAGCAGTT
GCACAGCGCGCCTGCCTGGCCGTCCTGGCCGCCCTTTGCGGGAACACTTC
TCATGGGGAGGGGGGCGGTTGCGGTGGTGGCGGTGGCAGCGGCAGCGCTT
CCAATCATGAGCTTGACCGCTTCTGCCGTCGCCAG
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