mRNA_P-wetherbeei_contig55340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55340.1.1
Unique NamemRNA_P-wetherbeei_contig55340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55340.1.1 vs. uniprot
Match: UPI00199B104B (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI00199B104B)

HSP 1 Score: 140 bits (352), Expect = 1.030e-36
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   73 SHQGEPFLATATLASLPEERIADECLSMGPQSDAPGAELPFLDAARLKLDATRNKVEIRTDTPVNSPGVELVLRVQCAGAPLYARHFTVLIPPA 354
            S QGEPFLA A LASLPEE I+  CLSMGP+SDAPG+E+PFL  A LKLDA RN V I TD PV  P + LVLRVQCAGAPLYARHF+ LIPPA
Sbjct:    3 SRQGEPFLAVANLASLPEENISSACLSMGPESDAPGSEMPFLAKANLKLDAARNLVTITTDEPVAIPALALVLRVQCAGAPLYARHFSALIPPA 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00199B104B1.030e-3673.40Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55340contigP-wetherbeei_contig55340:56..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size357
Hectar predicted targeting categorysignal peptide
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.0120337-CDS-P-wetherbeei_contig55340:55..4121683186825.0120337-CDS-P-wetherbeei_contig55340:55..412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55340 56..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55340.1.1prot_P-wetherbeei_contig55340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55340 56..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55340.1.1

>prot_P-wetherbeei_contig55340.1.1 ID=prot_P-wetherbeei_contig55340.1.1|Name=mRNA_P-wetherbeei_contig55340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
ALAVLFTLISATAAPVDLWRLSVLSHQGEPFLATATLASLPEERIADECL
SMGPQSDAPGAELPFLDAARLKLDATRNKVEIRTDTPVNSPGVELVLRVQ
CAGAPLYARHFTVLIPPAS
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mRNA from alignment at P-wetherbeei_contig55340:56..412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55340.1.1 ID=mRNA_P-wetherbeei_contig55340.1.1|Name=mRNA_P-wetherbeei_contig55340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig55340:56..412- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCTGTGTTGTTCACTCTCATTTCCGCAACCGCCGCCCCGGTAGA
CCTCTGGCGACTGAGCGTGTTGTCGCATCAGGGCGAGCCCTTTCTGGCGA
CCGCCACGCTGGCTTCCCTCCCCGAGGAACGTATTGCCGACGAGTGCCTG
TCGATGGGCCCGCAAAGCGATGCGCCGGGCGCGGAACTGCCTTTCCTCGA
TGCCGCGCGCCTGAAACTCGACGCCACGCGCAATAAAGTCGAAATCCGCA
CCGATACGCCGGTGAACAGCCCGGGCGTTGAACTGGTGCTGCGCGTGCAG
TGCGCCGGCGCGCCGCTCTACGCGCGTCATTTCACGGTACTGATTCCACC
TGCGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55340:56..412-

>mRNA_P-wetherbeei_contig55340.1.1 ID=mRNA_P-wetherbeei_contig55340.1.1|Name=mRNA_P-wetherbeei_contig55340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig55340:56..412- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCTGTGTTGTTCACTCTCATTTCCGCAACCGCCGCCCCGGTAGA
CCTCTGGCGACTGAGCGTGTTGTCGCATCAGGGCGAGCCCTTTCTGGCGA
CCGCCACGCTGGCTTCCCTCCCCGAGGAACGTATTGCCGACGAGTGCCTG
TCGATGGGCCCGCAAAGCGATGCGCCGGGCGCGGAACTGCCTTTCCTCGA
TGCCGCGCGCCTGAAACTCGACGCCACGCGCAATAAAGTCGAAATCCGCA
CCGATACGCCGGTGAACAGCCCGGGCGTTGAACTGGTGCTGCGCGTGCAG
TGCGCCGGCGCGCCGCTCTACGCGCGTCATTTCACGGTACTGATTCCACC
TGCGTCC
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