mRNA_P-wetherbeei_contig5534.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5534.1.1
Unique NamemRNA_P-wetherbeei_contig5534.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5534contigP-wetherbeei_contig5534:1359..3782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1749
Hectar predicted targeting categoryother localisation
Exons3
Cds size1416
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.9636805-UTR-P-wetherbeei_contig5534:1358..16901683186824.9636805-UTR-P-wetherbeei_contig5534:1358..1690Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5534 1359..1690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.9728599-CDS-P-wetherbeei_contig5534:1690..23531683186824.9728599-CDS-P-wetherbeei_contig5534:1690..2353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5534 1691..2353 -
1683186824.980982-CDS-P-wetherbeei_contig5534:2818..31931683186824.980982-CDS-P-wetherbeei_contig5534:2818..3193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5534 2819..3193 -
1683186824.9891067-CDS-P-wetherbeei_contig5534:3404..37821683186824.9891067-CDS-P-wetherbeei_contig5534:3404..3782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5534 3405..3782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5534.1.1prot_P-wetherbeei_contig5534.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5534 1691..3782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5534.1.1

>prot_P-wetherbeei_contig5534.1.1 ID=prot_P-wetherbeei_contig5534.1.1|Name=mRNA_P-wetherbeei_contig5534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=472bp
PEVAAAAEAAAAAETAAAAAATAAGGNSIGEDSKAEGHRCRRTRRLRSPA
AGPADTTADAAAAAAEVAVTGTGAGGSAAAAAPPVVRGWQQPLSSLRTRG
NGNGGTGSAAIGSPLSVLSIVNFVAQECIGEVLAGGQQQFAKRNGRHCRD
DRGGVGSIGTGGVGSVGSVGDGGSRGSSDGGDPPHGPFHPFSGDYHAGGE
AEEEWEQRRQQRRRWRCGPSEGSSAYSSSPGSKMDHATHLLDWCLSRAKE
QVEDSGIFLVYELVSDRNLFYCCQEYSPERARRAAADWNAVVPMVRACPG
LLALFPGGPLRARLLAASCGVRGRSGSGGGGGGNGGGNGGGGSGDGHVND
NVGGGGTGGGGGGGLVDPASYACLVEAWGVCRRNTAGGELLPPALRLEEE
APLSPTDLERVSGISAVIRRVVSRCLEWTPPLLSSQFLAPPTLPALLALP
ALPPPVPPLPSLPASPTQRQF*
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mRNA from alignment at P-wetherbeei_contig5534:1359..3782-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5534.1.1 ID=mRNA_P-wetherbeei_contig5534.1.1|Name=mRNA_P-wetherbeei_contig5534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2424bp|location=Sequence derived from alignment at P-wetherbeei_contig5534:1359..3782- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGGTCGCCGCCGCCGCCGAGGCCGCCGCCGCCGCCGAAACTGCCGC
CGCAGCAGCAGCAACGGCAGCTGGCGGAAACTCTATTGGAGAAGACTCCA
AAGCAGAAGGGCACCGCTGCCGGCGAACAAGGAGGTTGCGGTCGCCGGCG
GCTGGTCCCGCCGACACTACCGCGGACGCTGCCGCCGCTGCCGCCGAAGT
AGCGGTAACCGGCACGGGTGCCGGTGGCAGCGCTGCTGCCGCGGCACCGC
CAGTGGTCCGGGGGTGGCAGCAGCCACTGTCATCGCTGCGGACACGTGGT
AACGGCAACGGCGGCACCGGCTCTGCCGCCATCGGCTCTCCGCTTTCCGT
GCTCTCTATCGTTAATTTTGTGGCCCAAGTAAGACCTCCTCTCATCTTTC
TTTTCCAACATTTCATGGAGGTTAAACTTAGAATTTCTCCCTTTGTTTTC
CATGACTTCTCGCTTCGGCTCGCCTTCCCTTTTAAGATATTTGGTGATCC
CGTCTTTGCTCCGTCTGCCTCCGACCCTGGCCGGTCCTCGCCCGCCCGCC
CGTTCTCCTTGTGGTGGGGCGAGCAATCGTGCACGACAGGAATGCATTGG
AGAAGTGCTTGCTGGGGGCCAGCAGCAGTTTGCTAAAAGGAACGGGCGGC
ACTGCCGCGATGACCGCGGTGGCGTCGGCAGCATCGGCACCGGCGGCGTC
GGCAGTGTCGGCAGCGTTGGTGACGGCGGGAGCAGGGGCAGCAGCGACGG
TGGCGACCCCCCACACGGCCCGTTCCACCCATTCTCCGGGGACTACCACG
CGGGTGGCGAGGCGGAAGAGGAGTGGGAGCAGCGGCGGCAGCAAAGGCGG
CGGTGGCGGTGTGGGCCATCCGAAGGGAGCTCGGCCTATTCGTCTTCGCC
GGGCTCGAAGATGGATCACGCGACCCATCTCCTGGACTGGTGCCTCTCCC
GGGCTAAGGAGCAGGTGCGGCGCAGCGCGACGCGATGCGGCGTGGCCATG
GAAATATATTCCTCTTGCTCGCTTGCCTTTTTTTAACTGTGCCGCGGCAC
AGGTACTTTATACCCGAAATGGCGATAGAAAGGTTCGCCGCGGTTTGTTT
GGTGTAGCTGCTGCTGGTGGCGACTTTACCAGATGCTGTCTAAGCCCGTG
TGTTCTACGCTGCATCGGGTGGCTTCCCTTCCACGCCAGATTTGTCACTC
TTTTCTCCACAGCGGATGTGCCTTTCGAGAGATGACCCGCCATTCTGTTA
CGCTCTTCCTGCGCTTGCGACCCTTCGGCCAAATAAGGGCTGGGTGCAGC
CACCGGGTTTTGTATCACACCCGCCTGCCTGCCCGGCCGGGTCCCGAAAT
CGCCGAAAACCATCGAAACTGCCACCGTTTCCCCTCCTCCTTCCTTTGCA
TCTTTCTCCCTCTCCTCGTCTGCTGGCAGGTGGAAGATTCCGGCATCTTT
CTGGTCTACGAGTTGGTGTCCGACCGCAACCTGTTCTACTGCTGCCAGGA
ATACTCCCCGGAGCGGGCACGGCGGGCGGCAGCGGACTGGAACGCCGTCG
TGCCGATGGTGCGGGCGTGCCCCGGCCTCCTCGCCCTTTTCCCCGGAGGG
CCGCTGCGGGCCCGACTGCTGGCGGCGAGCTGCGGCGTCCGCGGTCGCAG
CGGCAGCGGCGGCGGCGGCGGCGGTAACGGCGGCGGTAACGGCGGCGGCG
GTAGCGGCGATGGCCACGTTAATGACAACGTCGGCGGCGGTGGTACCGGC
GGCGGTGGCGGTGGCGGCCTTGTGGACCCAGCGTCGTACGCATGCCTGGT
GGAGGCATGGGGCGTCTGCCGCCGCAACACGGCGGGCGGAGAGTTGCTGC
CGCCGGCGCTGCGGCTGGAGGAAGAAGCGCCGCTCTCCCCGACGGACCTC
GAGCGCGTTTCGGGAATCAGTGCCGTCATTCGGCGGGTCGTGTCGCGTTG
CCTGGAATGGACGCCGCCGCTGCTCTCGTCTCAGTTTCTGGCGCCGCCAA
CGCTGCCTGCACTCTTGGCGCTGCCCGCACTGCCACCGCCAGTGCCGCCG
CTGCCGTCGCTGCCGGCATCGCCAACGCAGCGGCAATTTTGAACCTGTCT
TTTGACGCTGATGCCCGCGGCAGCACTACCGGATATGCCACTGCAGCCGC
TGTGCCCGTCTCAGGTTACTAGCAGTGTCACGTCAGGAACCCAGTAGTGG
CAGTGGCAGCACCCGGCTAATCAGGTCGGGTGAAAAGCTGGGCAGTCAAT
GGTTAGTAGCGTTCAAGATGTGCACCCTTTGGCAGATCTCAGATCTCAAA
ATTCGGAAATAGTCCATCCGGCTCTCTAAGATGTAATTACAATCAAACTT
CCCGCTAAGCTTCCGCTTAGATTTGCCGTTTTCCGGCCCTTGGCCACAAC
CCAAGGTCCGTATGCTCTGTTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5534:1359..3782-

>mRNA_P-wetherbeei_contig5534.1.1 ID=mRNA_P-wetherbeei_contig5534.1.1|Name=mRNA_P-wetherbeei_contig5534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1416bp|location=Sequence derived from alignment at P-wetherbeei_contig5534:1359..3782- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGGTCGCCGCCGCCGCCGAGGCCGCCGCCGCCGCCGAAACTGCCGC
CGCAGCAGCAGCAACGGCAGCTGGCGGAAACTCTATTGGAGAAGACTCCA
AAGCAGAAGGGCACCGCTGCCGGCGAACAAGGAGGTTGCGGTCGCCGGCG
GCTGGTCCCGCCGACACTACCGCGGACGCTGCCGCCGCTGCCGCCGAAGT
AGCGGTAACCGGCACGGGTGCCGGTGGCAGCGCTGCTGCCGCGGCACCGC
CAGTGGTCCGGGGGTGGCAGCAGCCACTGTCATCGCTGCGGACACGTGGT
AACGGCAACGGCGGCACCGGCTCTGCCGCCATCGGCTCTCCGCTTTCCGT
GCTCTCTATCGTTAATTTTGTGGCCCAAGAATGCATTGGAGAAGTGCTTG
CTGGGGGCCAGCAGCAGTTTGCTAAAAGGAACGGGCGGCACTGCCGCGAT
GACCGCGGTGGCGTCGGCAGCATCGGCACCGGCGGCGTCGGCAGTGTCGG
CAGCGTTGGTGACGGCGGGAGCAGGGGCAGCAGCGACGGTGGCGACCCCC
CACACGGCCCGTTCCACCCATTCTCCGGGGACTACCACGCGGGTGGCGAG
GCGGAAGAGGAGTGGGAGCAGCGGCGGCAGCAAAGGCGGCGGTGGCGGTG
TGGGCCATCCGAAGGGAGCTCGGCCTATTCGTCTTCGCCGGGCTCGAAGA
TGGATCACGCGACCCATCTCCTGGACTGGTGCCTCTCCCGGGCTAAGGAG
CAGGTGGAAGATTCCGGCATCTTTCTGGTCTACGAGTTGGTGTCCGACCG
CAACCTGTTCTACTGCTGCCAGGAATACTCCCCGGAGCGGGCACGGCGGG
CGGCAGCGGACTGGAACGCCGTCGTGCCGATGGTGCGGGCGTGCCCCGGC
CTCCTCGCCCTTTTCCCCGGAGGGCCGCTGCGGGCCCGACTGCTGGCGGC
GAGCTGCGGCGTCCGCGGTCGCAGCGGCAGCGGCGGCGGCGGCGGCGGTA
ACGGCGGCGGTAACGGCGGCGGCGGTAGCGGCGATGGCCACGTTAATGAC
AACGTCGGCGGCGGTGGTACCGGCGGCGGTGGCGGTGGCGGCCTTGTGGA
CCCAGCGTCGTACGCATGCCTGGTGGAGGCATGGGGCGTCTGCCGCCGCA
ACACGGCGGGCGGAGAGTTGCTGCCGCCGGCGCTGCGGCTGGAGGAAGAA
GCGCCGCTCTCCCCGACGGACCTCGAGCGCGTTTCGGGAATCAGTGCCGT
CATTCGGCGGGTCGTGTCGCGTTGCCTGGAATGGACGCCGCCGCTGCTCT
CGTCTCAGTTTCTGGCGCCGCCAACGCTGCCTGCACTCTTGGCGCTGCCC
GCACTGCCACCGCCAGTGCCGCCGCTGCCGTCGCTGCCGGCATCGCCAAC
GCAGCGGCAATTTTGA
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