mRNA_P-wetherbeei_contig5532.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5532.2.1
Unique NamemRNA_P-wetherbeei_contig5532.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5532.2.1 vs. uniprot
Match: A0A835Z076_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z076_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.620e-13
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  645 VVALDAGAAAQ--AGDDLLVLVRPNNAREHGKLEAVQIAAARAGGLHVPVVLVNPELSCYHGRHETLFRPNLLADFRTCFHLDLAAARYDRRRSVAVLRRYPRAYELY 962
            +V +DA  AAQ  A D++L+LVRPNNA    KLE VQ    +A    V V +VNPEL  Y   + T  RP +L+DF   F +D AA   ++   VA+L+RYPR +ELY
Sbjct:    5 IVRIDALGAAQVAADDEMLLLVRPNNAVTWKKLEQVQELLVQATNKGVCVAMVNPELQSYAAVNGTTCRPMVLSDFAATFCIDPAAFVLNQEVHVALLKRYPREWELY 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5532.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z076_9STRA2.620e-1346.30DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5532contigP-wetherbeei_contig5532:1666..3410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1663
Hectar predicted targeting categoryother localisation
Exons2
Cds size897
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.6604204-UTR-P-wetherbeei_contig5532:1665..18861683186824.6604204-UTR-P-wetherbeei_contig5532:1665..1886Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5532 1666..1886 +
1683186824.6926365-UTR-P-wetherbeei_contig5532:2865..34101683186824.6926365-UTR-P-wetherbeei_contig5532:2865..3410Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5532 2866..3410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.6721365-CDS-P-wetherbeei_contig5532:1886..26331683186824.6721365-CDS-P-wetherbeei_contig5532:1886..2633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5532 1887..2633 +
1683186824.6827574-CDS-P-wetherbeei_contig5532:2715..28651683186824.6827574-CDS-P-wetherbeei_contig5532:2715..2865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5532 2716..2865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5532.2.1prot_P-wetherbeei_contig5532.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5532 1887..2865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5532.2.1

>prot_P-wetherbeei_contig5532.2.1 ID=prot_P-wetherbeei_contig5532.2.1|Name=mRNA_P-wetherbeei_contig5532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
MLPPFPSLDPQVDIRLPALARDAEDGARAAQEDPLLLDIVGKMAATWAMR
GSGRVRVALNSVVVAAAARNSLAASPNGPGSSGSSSQGESSGAAPPGRRA
SASSFPANAAATAASAAATAGRGIDGRRRLGRSAAVRPDVRVVALDAGAA
AQAGDDLLVLVRPNNAREHGKLEAVQIAAARAGGLHVPVVLVNPELSCYH
GRHETLFRPNLLADFRTCFHLDLAAARYDRRRSVAVLRRYPRAYELYFKL
LCDLACFAHLYSYRPSRTVARTTCSRSWGGSTSESTRISQARPASRSD*
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mRNA from alignment at P-wetherbeei_contig5532:1666..3410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5532.2.1 ID=mRNA_P-wetherbeei_contig5532.2.1|Name=mRNA_P-wetherbeei_contig5532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1745bp|location=Sequence derived from alignment at P-wetherbeei_contig5532:1666..3410+ (Phaeothamnion wetherbeei SAG_119_79)
AAGACCGTGGACGACATTGCGCGTGAAGCCGCCGGAGCGTGTGCAGATAT
GGCGCGGGCGGGCCAGGATGGAAGCCGTTTTTTGGTGGGTCGCGTCTTGC
GGTATCGCGCAGGGAAAGCGAAGTAGCTCAGGGCTTGGTAGCTTGGAGCA
GCGTGTGATTACGTTCTACACCCCTCTCGACTATCAACGTGTCTGATGAT
CACCGTTGAAAAACTTGAAAAATGCTCCCTCCCTTTCCTTCGCTCGACCC
CCAGGTGGACATTCGGCTGCCGGCGCTGGCGCGGGACGCGGAGGACGGCG
CTCGGGCGGCGCAGGAGGACCCGCTGCTGCTCGACATCGTAGGGAAGATG
GCAGCGACGTGGGCGATGCGAGGCAGCGGCCGCGTCCGCGTCGCCCTCAA
CTCGGTGGTCGTCGCAGCGGCGGCGCGCAACAGCCTTGCCGCTTCGCCCA
ATGGCCCTGGAAGTAGTGGTAGCAGCAGTCAAGGCGAGTCCTCTGGGGCT
GCTCCGCCGGGGCGTCGAGCCTCCGCGTCGTCCTTCCCCGCAAACGCTGC
AGCCACCGCCGCCTCGGCCGCCGCCACCGCCGGCCGTGGCATAGACGGGC
GCCGTCGCCTGGGCCGGTCGGCGGCTGTCCGCCCGGACGTGCGCGTTGTG
GCGCTGGACGCCGGCGCGGCGGCGCAGGCCGGCGACGACCTGCTGGTGCT
GGTGCGGCCCAACAATGCCCGCGAGCACGGCAAGCTCGAGGCGGTGCAGA
TCGCCGCGGCGCGCGCCGGCGGCCTGCACGTGCCTGTCGTGCTCGTCAAC
CCGGAGCTGTCATGCTACCATGGCCGCCACGAGACGCTCTTCCGCCCAAA
TCTGCTGGCGGACTTTCGCACCTGCTTCCACCTCGACCTGGCGGCGGCGC
GCTACGACCGGCGGAGATCCGTTGCTGTCCTGCGGCGGTATCCGCGCGCC
TACGAGCTCTACTTCAAGGTATTGTCTCACTTTGTTCCTCTAATTTTTTG
CCATGTTTCGTTTCCTCCTCAGATTTCCCGTTTCTGGCTTTCATTAATAG
CTTCTTTGCGATCTTGCCTGTTTCGCGCACCTCTACTCCTACCGCCCTTC
TCGCACCGTCGCCAGGACGACCTGCAGCCGGAGCTGGGGTGGGTCTACTT
CGGAGTCGACCCGGATCTCCCAAGCGAGGCCCGCCTCAAGGAGCGATTAA
GGAGCAGCGGACTCGTCGACGACAGACCGCCAGAGCTCGAGCCCCGGTGC
CCTTGATGACTGATTGAAAGAGGCCCCCACGAAGTGAAGAGAATCTGACA
CGTAGCGCGCGAGGAAGGAAAGGGAGAGAAGATTCCTTTGTTGATAACCT
AGTTTCAGTTATCCCTTTTTATGGTACCAGCAGCGCAGAATAGCGGCGAG
GCGGAAGAAAAGAGAGGAGAGATGTGCGCGGCACATGTTTTGCCTGATGC
TGGTTGTGGCGTTCTGAGAAGGGAGAAGAGGAGAGGAAGTGGAGGTTTCA
CGCAAACGGGCGGACCTTGGTGCGTTTGGAACTCTGAAGGAAACGCCTCC
AGCTGGATTGGTGTTGCGGCTGCAATCCCTGAAGACTGCAGGAAAGCGTC
AACGTGCCGGCTCGCGCCGTTTTGATGCCGCTAAAGTACAGCAATGCGGG
CATGCCGAAGCTGACGGCGGGCCACAGCGTTCCCGTCGGCTGATTGAATT
AGATCGCAAGAAAAAGACAGCGAGATAAAATAAAAGAGATGTCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5532:1666..3410+

>mRNA_P-wetherbeei_contig5532.2.1 ID=mRNA_P-wetherbeei_contig5532.2.1|Name=mRNA_P-wetherbeei_contig5532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig5532:1666..3410+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCCTCCCTTTCCTTCGCTCGACCCCCAGGTGGACATTCGGCTGCC
GGCGCTGGCGCGGGACGCGGAGGACGGCGCTCGGGCGGCGCAGGAGGACC
CGCTGCTGCTCGACATCGTAGGGAAGATGGCAGCGACGTGGGCGATGCGA
GGCAGCGGCCGCGTCCGCGTCGCCCTCAACTCGGTGGTCGTCGCAGCGGC
GGCGCGCAACAGCCTTGCCGCTTCGCCCAATGGCCCTGGAAGTAGTGGTA
GCAGCAGTCAAGGCGAGTCCTCTGGGGCTGCTCCGCCGGGGCGTCGAGCC
TCCGCGTCGTCCTTCCCCGCAAACGCTGCAGCCACCGCCGCCTCGGCCGC
CGCCACCGCCGGCCGTGGCATAGACGGGCGCCGTCGCCTGGGCCGGTCGG
CGGCTGTCCGCCCGGACGTGCGCGTTGTGGCGCTGGACGCCGGCGCGGCG
GCGCAGGCCGGCGACGACCTGCTGGTGCTGGTGCGGCCCAACAATGCCCG
CGAGCACGGCAAGCTCGAGGCGGTGCAGATCGCCGCGGCGCGCGCCGGCG
GCCTGCACGTGCCTGTCGTGCTCGTCAACCCGGAGCTGTCATGCTACCAT
GGCCGCCACGAGACGCTCTTCCGCCCAAATCTGCTGGCGGACTTTCGCAC
CTGCTTCCACCTCGACCTGGCGGCGGCGCGCTACGACCGGCGGAGATCCG
TTGCTGTCCTGCGGCGGTATCCGCGCGCCTACGAGCTCTACTTCAAGCTT
CTTTGCGATCTTGCCTGTTTCGCGCACCTCTACTCCTACCGCCCTTCTCG
CACCGTCGCCAGGACGACCTGCAGCCGGAGCTGGGGTGGGTCTACTTCGG
AGTCGACCCGGATCTCCCAAGCGAGGCCCGCCTCAAGGAGCGATTAA
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