mRNA_P-wetherbeei_contig55196.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55196.1.1
Unique NamemRNA_P-wetherbeei_contig55196.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: UPI001C3D6C4A (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D6C4A)

HSP 1 Score: 219 bits (559), Expect = 1.800e-67
Identity = 122/171 (71.35%), Postives = 139/171 (81.29%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLAA 513
            SP L  I+R MNL SDN IAETL K +GA+G+G GTTAAG AR R  L  RGI+ P DRLVDGSGLSRANR++AA++VRLIAAADAD  WG  L+ SLA+GG+GTL+ RF +GPAT+RVRAKTGYL+ VSAMAGRVVSR G  YAFAL+ NS DI GARA QDRVVTLLAA
Sbjct:  219 SPRLRAIVRQMNLESDNTIAETLMKGIGAHGAGRGTTAAGAARIREHLERRGILGPGDRLVDGSGLSRANRLSAATLVRLIAAADADRAWGGPLVHSLARGGEGTLVRRFTSGPATKRVRAKTGYLDCVSAMAGRVVSRRGQRYAFALVANSCDIWGARAAQDRVVTLLAA 389          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: UPI001C3E8159 (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E8159)

HSP 1 Score: 215 bits (547), Expect = 8.540e-66
Identity = 118/170 (69.41%), Postives = 137/170 (80.59%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLA 510
            SPPL  I+R MNLASDNFIAETL K VGA G      AAG ARTR LL  RG++ P DRLVDGSGLSRANR++A ++V ++AAAD D TWGAALISSLA+GG+GTLI RF TG AT+RVRAKTGYL+GVS+MAGRVVSRGG  YAFA+  N++DI  ARA Q+RVV +LA
Sbjct:  219 SPPLRTIVRTMNLASDNFIAETLVKGVGAAGXXXXXXAAGTARTRELLESRGMLAPGDRLVDGSGLSRANRLSARTLVGVVAAADDDDTWGAALISSLARGGEGTLIRRFTTGVATKRVRAKTGYLDGVSSMAGRVVSRGGQRYAFAVEANTADIAAARAVQERVVVMLA 388          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A1H6FM16_THEAL (D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (Penicillin-binding protein 4) n=2 Tax=Thermoleophilum album TaxID=29539 RepID=A0A1H6FM16_THEAL)

HSP 1 Score: 114 bits (286), Expect = 8.430e-27
Identity = 80/171 (46.78%), Postives = 104/171 (60.82%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGG-QGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLA 510
            SPPL +I+R  N  SDNF AE L K +    +  G+T  G+   RA+L   G VQP  +LVDGSGLSRANR + + +VRL+  A   P WG   + SL   G +GTL  RF +GPA  R RAKTG L GV+A++G   +R G  Y F+L+ N +    ARAT++ VV  LA
Sbjct:  312 SPPLSLIVRVTNRDSDNFFAEMLLKQLATRAATPGSTELGLRIERAVLQRLG-VQP--KLVDGSGLSRANRASPSEIVRLLRNALRRP-WGPQWLRSLPLAGREGTLRRRFRSGPARGRCRAKTGTLTGVTALSGYCRARSGERYWFSLLANGTPTARARATEEAVVQALA 478          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A7V9EZG0_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7V9EZG0_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 9.220e-23
Identity = 73/171 (42.69%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQ-GTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLA 510
            SP +  +    N +SDNF+AETL KD+     G GTT  G AR  A    R  +    RLVDGSGLSR NR +  ++ RL+ A         A   SL+  G+ GTL  R   GPA  R R KTG L+GVSA++G   +R G  Y F+++MN  +  GARA QDR++  +A
Sbjct:  258 SPSMARLAALTNKSSDNFLAETLMKDLAMQADGRGTTTGG-ARIAAAFASR--LGGRARLVDGSGLSRGNRASPFAVARLLMALRGRQDEFPAFFDSLSIAGRDGTLGPRMRRGPARNRCRGKTGTLSGVSAVSGYCKARSGDTYVFSILMNGVNPFGARALQDRMLQAIA 425          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A537Z3R5_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537Z3R5_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 3.070e-22
Identity = 73/174 (41.95%), Postives = 97/174 (55.75%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGG-QGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDIL--GARATQDRVVTLLAA 513
            SPPL  ++R M+  SDNF AE L K +GA     GT+AAG A    +LT+ G+     R+VDGSGLSR +R+ A ++  L+  A  DPT    L+++L   G  GTL  R   GPA   V AKTG  +  SA++G V  R    Y FA++ N   +    AR  QDR   +LAA
Sbjct:  249 SPPLSAVVRFMDRESDNFTAEMLLKQLGAIELERGTSAAGAAVVSRVLTEAGVPMTGVRIVDGSGLSRLDRLTANALTALLHVAWTDPTIKPVLLAALPVAGVSGTLADRMRRGPARGHVAAKTGTTSDASALSGFVRDR----YVFAVVQNGHPLSYWWARVAQDRFPQVLAA 418          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A7V9M8M2_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9M8M2_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 7.040e-22
Identity = 74/171 (43.27%), Postives = 94/171 (54.97%), Query Frame = 1
Query:    7 PLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQ-GTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDI--LGARATQDRVVTLLA 510
            PL  +LR MN  SDNF AE L K +G   +  GTT AG A  R +L ++ I     R+VDGSGLSR NR+  A++V ++    ADP     L+S+L   G+ GTL  R    PA  RV AKTG     SA++G V  R    Y FA++ N S I    AR  QDR   +LA
Sbjct:  234 PLLHVLRFMNRESDNFTAEVLLKQLGTQLTDQGTTFAGSAVVRQILAEQEIPLGGVRIVDGSGLSRLNRLTPATLVAMLQKGYADPLLREVLLSALPVAGRTGTLRRRMRGSPAAGRVMAKTGTTREASALSGYVKRR----YVFAILQNGSPISAYSARRAQDRFAAVLA 400          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A538E7U2_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538E7U2_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 9.750e-22
Identity = 74/174 (42.53%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGG-QGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDIL--GARATQDRVVTLLAA 513
            SPPL  I+R M+  SDNF AE L K +GA     GT+AAG +    +LT+ GI     R+VDGSGLSR +R+ A ++  L+  A  DP     L+++L   G  GTL  R   GPA   V AKTG  N  SA++G V +R    +AFA++ N   +    AR  QDR   +LAA
Sbjct:  233 SPPLSSIVRFMDRESDNFTAEMLLKQLGAIELDHGTSAAGSSVVSRVLTEAGIPMTGVRIVDGSGLSRFDRLTAGALTTLLREAWTDPVIKPVLLAALPVAGVSGTLQDRMRRGPAHGNVAAKTGTTNDASALSGFVRNR----FAFAVVQNGHPLSYWWARIAQDRFAQVLAA 402          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A2T4UBU9_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=2 Tax=Conexibacter sp. Seoho-28 TaxID=2133960 RepID=A0A2T4UBU9_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 3.780e-21
Identity = 71/175 (40.57%), Postives = 92/175 (52.57%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPT-----WGAALISSLAQGGQGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLA 510
            SPP+  +    N  SDNF AE L K +GA     GTTAAG+A  R  L  RGI      +VDGSGLSRA++ +   +V L+ A D  P      W  +L      G  GTL  R     A  R  AKTG L GVSA++G   + GG    F+L+ N+ D L A+  +DR+V  +A
Sbjct:   23 SPPMAQLAATTNQPSDNFYAEMLVKGLGARFGTAGTTAAGIAVMRTTL--RGIGVRPTAMVDGSGLSRADKASPRQLVTLLQAMDRQPADVRTAWRTSLPVI---GRSGTLAGRMRGTAAEGRCSAKTGTLRGVSALSGFCTTTGGRSVYFSLLENAVDALAAKRIEDRMVPKIA 192          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A6N7YNW8_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Conexibacter sp. W3-3-2 TaxID=2675227 RepID=A0A6N7YNW8_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-20
Identity = 72/175 (41.14%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPT-----WGAALISSLAQGGQGTLIHRFLTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARATQDRVVTLLA 510
            SPP+  +    N  SDNF AE L K +GA     GTTAAG+A  R  L  RGI      +VDGSGLSRA++ +   +V L+ A D  PT     W  +L      G  GTL  R     A  R  AKTG L GVSA++G   + GG    F+L+ N+ D L A+  +DR+V  +A
Sbjct:  237 SPPMAQLAATTNQPSDNFYAEMLVKGLGARFGSAGTTAAGIAVMRTTL--RGIGVRPTAMVDGSGLSRADKASPRQLVTLLQAMDRQPTDVRTAWRTSLPVI---GRSGTLAGRMRGTAAEGRCSAKTGTLRGVSALSGFCTTTGGRSVYFSLLENAVDALAAKRIEDRMVPKIA 406          
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Match: A0A7W0ZF66_9ACTN (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0ZF66_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 1.320e-20
Identity = 73/173 (42.20%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 SPPLPVILRAMNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRLVDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQGTLIHRFLTGPATR-RVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDI--LGARATQDRVVTLLA 510
            S PL  I+R MN  SDNF++E L K++GA  +  G+TAAG       L   G+     R+VDGSGLSR +R+ A ++V ++    ADP    A ++SLA  G    + R L   +TR RV AKTG  +  SA+AG V  R    Y FA++ N S +    AR  QDR VT+LA
Sbjct:  233 SEPLADIVRGMNRESDNFVSEMLLKELGASVARRGSTAAGAQVVHDELAAAGVPVTGVRIVDGSGLSRLDRLTARALVAILRIGAADPAMRDAFVTSLAVAGVSGTLKRRLDRRSTRGRVIAKTGTTSVASALAGFVRRR----YVFAIVQNGSPVPYWTARRAQDRFVTVLA 401          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55196.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D6C4A1.800e-6771.35D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
UPI001C3E81598.540e-6669.41D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A1H6FM16_THEAL8.430e-2746.78D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-a... [more]
A0A7V9EZG0_9ACTN9.220e-2342.69D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A537Z3R5_9ACTN3.070e-2241.95D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A7V9M8M2_9ACTN7.040e-2243.27D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A538E7U2_9ACTN9.750e-2242.53D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A2T4UBU9_9ACTN3.780e-2140.57D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A6N7YNW8_9ACTN1.000e-2041.14D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A7W0ZF66_9ACTN1.320e-2042.20D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55196contigP-wetherbeei_contig55196:14..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380390.JIAT01000011_gene2625
PFAMsPeptidase_S13
Model size513
Max annot lvl84995|Rubrobacteria
KEGG koko:K07259
KEGG Pathwayko00550,map00550
Hectar predicted targeting categoryother localisation
Exons1
Evalue8e-20
EggNOG OGsCOG2027@1|root,COG2027@2|Bacteria,2GJPH@201174|Actinobacteria,4CQ4E@84995|Rubrobacteria
EC3.4.16.4
DescriptionD-Ala-D-Ala carboxypeptidase 3 (S13) family
Cds size483
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.1257982-CDS-P-wetherbeei_contig55196:13..4961683186823.1257982-CDS-P-wetherbeei_contig55196:13..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55196 14..496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.137022-UTR-P-wetherbeei_contig55196:496..5261683186823.137022-UTR-P-wetherbeei_contig55196:496..526Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55196 497..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55196.1.1prot_P-wetherbeei_contig55196.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55196 14..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55196.1.1

>prot_P-wetherbeei_contig55196.1.1 ID=prot_P-wetherbeei_contig55196.1.1|Name=mRNA_P-wetherbeei_contig55196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MNLASDNFIAETLAKDVGAYGSGVGTTAAGVARTRALLTDRGIVQPSDRL
VDGSGLSRANRVAAASMVRLIAAADADPTWGAALISSLAQGGQGTLIHRF
LTGPATRRVRAKTGYLNGVSAMAGRVVSRGGHHYAFALIMNSSDILGARA
TQDRVVTLLAA
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mRNA from alignment at P-wetherbeei_contig55196:14..526-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55196.1.1 ID=mRNA_P-wetherbeei_contig55196.1.1|Name=mRNA_P-wetherbeei_contig55196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55196:14..526- (Phaeothamnion wetherbeei SAG_119_79)
TCGCCGCCGTTGCCCGTGATCCTGAGGGCCATGAACCTCGCCAGCGACAA CTTCATCGCCGAGACCCTCGCCAAGGACGTCGGCGCCTACGGATCCGGCG TCGGCACCACGGCGGCCGGCGTGGCGCGCACCCGCGCCCTGCTCACCGAT CGGGGCATCGTGCAGCCGAGCGACCGCCTCGTCGACGGGTCGGGCCTCTC GCGCGCCAACCGGGTGGCCGCGGCGTCGATGGTGCGCCTGATCGCCGCAG CCGACGCCGACCCCACCTGGGGCGCGGCGCTCATCTCATCGCTGGCCCAG GGCGGTCAGGGCACTCTGATCCACCGCTTCCTCACCGGGCCGGCCACGCG GCGCGTGCGTGCCAAGACGGGCTACCTGAACGGCGTCAGCGCCATGGCCG GCCGGGTCGTGAGCCGCGGCGGGCACCACTACGCCTTCGCGTTGATCATG AACTCGTCGGACATCCTCGGCGCGCGCGCCACCCAGGATCGGGTCGTCAC TCTGCTCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55196:14..526-

>mRNA_P-wetherbeei_contig55196.1.1 ID=mRNA_P-wetherbeei_contig55196.1.1|Name=mRNA_P-wetherbeei_contig55196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig55196:14..526- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCGCCAGCGACAACTTCATCGCCGAGACCCTCGCCAAGGACGT
CGGCGCCTACGGATCCGGCGTCGGCACCACGGCGGCCGGCGTGGCGCGCA
CCCGCGCCCTGCTCACCGATCGGGGCATCGTGCAGCCGAGCGACCGCCTC
GTCGACGGGTCGGGCCTCTCGCGCGCCAACCGGGTGGCCGCGGCGTCGAT
GGTGCGCCTGATCGCCGCAGCCGACGCCGACCCCACCTGGGGCGCGGCGC
TCATCTCATCGCTGGCCCAGGGCGGTCAGGGCACTCTGATCCACCGCTTC
CTCACCGGGCCGGCCACGCGGCGCGTGCGTGCCAAGACGGGCTACCTGAA
CGGCGTCAGCGCCATGGCCGGCCGGGTCGTGAGCCGCGGCGGGCACCACT
ACGCCTTCGCGTTGATCATGAACTCGTCGGACATCCTCGGCGCGCGCGCC
ACCCAGGATCGGGTCGTCACTCTGCTCGCCGCC
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