mRNA_P-wetherbeei_contig5510.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5510.1.1
Unique NamemRNA_P-wetherbeei_contig5510.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5510.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5510contigP-wetherbeei_contig5510:2..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size679
Hectar predicted targeting categorychloroplast
Exons1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.838024-CDS-P-wetherbeei_contig5510:3..6781683186821.838024-CDS-P-wetherbeei_contig5510:3..678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5510 4..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5510.1.1prot_P-wetherbeei_contig5510.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5510 4..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5510.1.1

>prot_P-wetherbeei_contig5510.1.1 ID=prot_P-wetherbeei_contig5510.1.1|Name=mRNA_P-wetherbeei_contig5510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
GGGVSLCAFTAATAAAAGASAGGAGARPSPPSTASLSARGGGGDEADAVG
VAFPAAATERPSPGTSAVSVKIKEEPVVWLDGRPGGLSTSACHHEAAAAA
AARAAGATAPIEFRMVCQRPGAAPSAVALTWSGKADSDNVESNDAMLKDA
IQQLGTNWAANNGNVVADAADAAAAKYGAAYVGDDDGDDDMHPDMLAWDA
EAEADDGTASGYSSDASSDSWSSSA
back to top

mRNA from alignment at P-wetherbeei_contig5510:2..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5510.1.1 ID=mRNA_P-wetherbeei_contig5510.1.1|Name=mRNA_P-wetherbeei_contig5510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=677bp|location=Sequence derived from alignment at P-wetherbeei_contig5510:2..678- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGTGTCGCTCTGTGCTTTCACTGCGGCAACGGCTGCCGCGGC
GGGGGCGTCGGCCGGCGGCGCCGGCGCACGGCCGTCGCCGCCGTCGACGG
CGTCGCTGTCCGCAAGGGGCGGCGGAGGGGACGAAGCGGATGCGGTCGGA
GTGGCTTTCCCGGCCGCAGCGACAGAGCGCCCGAGTCCAGGCACCAGCGC
CGTCTCCGTCAAGATCAAGGAAGAACCGGTGGTATGGCTCGATGGCCGAC
CCGGCGGCTTGTCTACTTCCGCGTGTCATCATGAGGCCGCGGCGGCGGCG
GCTGCAAGGGCCGCCGGAGCGACGGCGCCGATAGAGTTCCGCATGGTCTG
CCAAAGGCCGGGCGCCGCGCCTTCCGCCGTCGCGCTGACCTGGAGCGGCA
AGGCGGACAGCGACAATGTCGAGAGCAACGACGCGATGCTTAAAGATGCC
ATACAGCAGCTGGGGACGAACTGGGCTGCCAACAATGGCAACGTTGTCGC
CGACGCCGCCGACGCCGCCGCGGCGAAATACGGCGCCGCCTACGTCGGCG
ATGATGACGGCGATGATGACATGCACCCGGACATGCTGGCATGGGACGCC
GAGGCCGAAGCCGACGACGGCACCGCCTCGGGCTACTCGAGCGACGCCAG
CAGCGATTCGTGGTCGTCATCGGCATC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5510:2..678-

>mRNA_P-wetherbeei_contig5510.1.1 ID=mRNA_P-wetherbeei_contig5510.1.1|Name=mRNA_P-wetherbeei_contig5510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig5510:2..678- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGTGTCGCTCTGTGCTTTCACTGCGGCAACGGCTGCCGCGGC
GGGGGCGTCGGCCGGCGGCGCCGGCGCACGGCCGTCGCCGCCGTCGACGG
CGTCGCTGTCCGCAAGGGGCGGCGGAGGGGACGAAGCGGATGCGGTCGGA
GTGGCTTTCCCGGCCGCAGCGACAGAGCGCCCGAGTCCAGGCACCAGCGC
CGTCTCCGTCAAGATCAAGGAAGAACCGGTGGTATGGCTCGATGGCCGAC
CCGGCGGCTTGTCTACTTCCGCGTGTCATCATGAGGCCGCGGCGGCGGCG
GCTGCAAGGGCCGCCGGAGCGACGGCGCCGATAGAGTTCCGCATGGTCTG
CCAAAGGCCGGGCGCCGCGCCTTCCGCCGTCGCGCTGACCTGGAGCGGCA
AGGCGGACAGCGACAATGTCGAGAGCAACGACGCGATGCTTAAAGATGCC
ATACAGCAGCTGGGGACGAACTGGGCTGCCAACAATGGCAACGTTGTCGC
CGACGCCGCCGACGCCGCCGCGGCGAAATACGGCGCCGCCTACGTCGGCG
ATGATGACGGCGATGATGACATGCACCCGGACATGCTGGCATGGGACGCC
GAGGCCGAAGCCGACGACGGCACCGCCTCGGGCTACTCGAGCGACGCCAG
CAGCGATTCGTGGTCGTCATCGGCA
back to top